Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

21498107 .. 21499168

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTTACAAATGCTTTAAAAAGGGTCCGCTTCCTACCCACTACTTCAAACTCTTCTCGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCCGCCGTGTCTCCACCGGGGTCGTCGCAGCAATTGGAAGACCCTACAAGACTATCGACCTTGACATTATCATATCTAGAGTTCCCGTTGGAAGTACCGATGATCAAGTACTATTGTCTCTTTCACATGATCAACCATGTAATAGCATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCATCATCAAGCGCAAGATGGTCGACCAGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGGACCAAGATTTATATAATATTGGAGTTCATTACGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

139

Amino Acids

15.5

Weight (kDa)

6.27

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	295
AciI	CCGC	2 cut(s)	28, 94
AfaI	GTAC	2 cut(s)	187, 201
AgsI	TTSAA	2 cut(s)	48, 81
AluBI	AGCT	2 cut(s)	244, 329
AluI	AGCT	2 cut(s)	244, 329
Alw26I	GTCTC	2 cut(s)	106, 213
ApeKI	GCWGC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	25, 379
AsuC2I	CCSGG	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	25, 379
BauI	CACGAG	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	2 cut(s)	282, 284
BceAI	ACGGC	1 cut(s)	81
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BclI	TGATCA	2 cut(s)	193, 220
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	106, 213
BfaI	CTAG	2 cut(s)	168, 369
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	2 cut(s)	25, 379
BmgT120I	GGNCC	2 cut(s)	25, 379
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	90, 338
BseXI	GCAGC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	106, 213
BsmI	GAATGC	1 cut(s)	237
Bsp143I	GATC	3 cut(s)	193, 220, 301
BspACI	CCGC	2 cut(s)	28, 94
BspLI	GGNNCC	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	193, 220, 301
BssSI	CACGAG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	90, 338
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	196, 223, 304
BstMAI	GTCTC	2 cut(s)	106, 213
BstMBI	GATC	3 cut(s)	193, 220, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	90, 338
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	25, 379
Csp6I	GTAC	2 cut(s)	186, 200
CviAII	CATG	2 cut(s)	218, 228
CviJI	RGCY	2 cut(s)	244, 329
CviKI_1	RGCY	2 cut(s)	244, 329
CviQI	GTAC	2 cut(s)	186, 200
DpnI	GATC	3 cut(s)	195, 222, 303
DpnII	GATC	3 cut(s)	193, 220, 301
DraI	TTTAAA	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	25, 379
EcoRV	GATATC	1 cut(s)	316
FaeI	CATG	2 cut(s)	221, 231
FaiI	YATR	7 cut(s)	70, 164, 219, 229, 346, 391, 393
FatI	CATG	2 cut(s)	217, 227
FbaI	TGATCA	2 cut(s)	193, 220
FblI	GTMKAC	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	77, 325
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	168, 369
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	1 cut(s)	120
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	2 cut(s)	221, 231
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	6, 296
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	2 cut(s)	168, 305
Hpy8I	GTNNAC	2 cut(s)	6, 296
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
Hsp92II	CATG	2 cut(s)	221, 231
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	2 cut(s)	193, 220
Kzo9I	GATC	3 cut(s)	193, 220, 301
LpnPI	CCDG	2 cut(s)	121, 312
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	2 cut(s)	168, 369
MalI	GATC	3 cut(s)	195, 222, 303
MboI	GATC	3 cut(s)	193, 220, 301
MboII	GAAGA	2 cut(s)	45, 141
MfeI	CAATTG	2 cut(s)	123, 266
MluCI	AATT	2 cut(s)	123, 266
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	160, 357
MnlI	CCTC	4 cut(s)	83, 301, 328, 356
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	343
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	109
MunI	CAATTG	2 cut(s)	123, 266
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	3 cut(s)	193, 220, 301
NlaIII	CATG	2 cut(s)	221, 231
NlaIV	GGNNCC	1 cut(s)	26
PctI	GAATGC	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	2 cut(s)	25, 379
RsaI	GTAC	2 cut(s)	187, 201
RsaNI	GTAC	2 cut(s)	186, 200
RseI	CAYNNNNRTG	1 cut(s)	343
SalI	GTCGAC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	193, 220, 301
Sau96I	GGNCC	2 cut(s)	25, 379
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	109
SetI	ASST	5 cut(s)	75, 153, 246, 331, 367
SfaNI	GCATC	1 cut(s)	347
SinI	GGWCC	2 cut(s)	25, 379
SmiMI	CAYNNNNRTG	1 cut(s)	343
Sse9I	AATT	2 cut(s)	123, 266
SsiI	CCGC	2 cut(s)	28, 94
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	168, 369
StyD4I	CCNGG	1 cut(s)	107
TaqI	TCGA	2 cut(s)	147, 295
TasI	AATT	2 cut(s)	123, 266
TatI	WGTACW	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	251, 339, 395
VpaK11BI	GGWCC	2 cut(s)	25, 379
XbaI	TCTAGA	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	295
XspI	CTAG	2 cut(s)	168, 369
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.