Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

7124399 .. 7125333

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026941

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGAGGAAGGGAAAAGTGTTGATTCAGAAGTACGAAGTTGATAAATTTTTAGGTCAAGGAACCTTTGCAAAGGTTTATAGAGCAAGGAACCTAGAAACTAATAAGAGTGTGTCTATTAAAGTAATCGCCAGAGACAAGGTTGTAAAAGATGGATTGGTTAATCAAACCAAAAGAGAGATAACTATCATGAGAAAGCTTAAACACCCAAACATAGTGCAGCTATATGATGTCATAGCCTCCAGAGACAAGATCTACCTTGTCATGGAATACGCGGAAGGCGGTGAGCTTTTTCACAAAATAGTAAAAGGAAAGCTGGAGGAGGAAGTAGCCAGGAACTACTTCCAACAGTTGATCACCACAGTTGACTTCTGCCACAGGAGAGGTGTTTACCACCACGATTTGAAGCCCGAAAACTTGCTGCTAGATGAAAATGGAGTGTTGAAGGTATGGGATTTTGGGTTAAGTGCGCTTGCTGAATCGAAGAGGGAAGATGGTTTACTACATACAAGTTGTGGCACACCTTCTTATGTAACTCCTGAAGTGTTAGGCAGGAAAGCTTATGATGGAGCCAAAGCCGATATATGGTCTTGTGGGATGATCTTGTTTGCACTATTGGCCGATGAAGTGAGAAGCCTCCTGTCTGGGATCCTCAACCCTGATCCAGATAAAAGGATTCTTATTTCAGAGATGATGGAAACTTGCTGGTTTAGAAAAGGCTCCAAATCCGTTACGACCATACCAGAAGTGGAAGACCCGGGTTTGTTGGGCGCTGATGCAGGGTTTGATGATCGTGACAACAGTGAGAAACAACAGCTTGCTAGACCAACCCTCTCTCAACGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

283

Amino Acids

32.02

Weight (kDa)

8.21

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 208	8.1e-64	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	14 - 206	8.5e-32	Protein tyrosine and serine/threonine kinase
ABC1	PF03109	83 - 166	9.2e-06	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	275
AciI	CCGC	2 cut(s)	275, 282
AclWI	GGATC	3 cut(s)	643, 656, 656
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	265, 585
AgsI	TTSAA	2 cut(s)	406, 445
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	6 cut(s)	199, 223, 289, 316, 560, 817
AluI	AGCT	6 cut(s)	199, 223, 289, 316, 560, 817
Alw26I	GTCTC	2 cut(s)	129, 240
AlwI	GGATC	3 cut(s)	643, 656, 656
Ama87I	CYCGRG	1 cut(s)	757
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	2 cut(s)	220, 421
ApoI	RAATTY	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	2 cut(s)	472, 773
AsuC2I	CCSGG	2 cut(s)	758, 759
AsuHPI	GGTGA	2 cut(s)	296, 349
AvaI	CYCGRG	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	648
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BbsI	GAAGAC	1 cut(s)	759
BbvI	GCAGC	2 cut(s)	232, 408
BccI	CCATC	4 cut(s)	146, 488, 560, 688
BciT130I	CCWGG	1 cut(s)	334
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	758, 759
BcoDI	GTCTC	2 cut(s)	129, 240
BfaI	CTAG	3 cut(s)	95, 425, 822
BfoI	RGCGCY	1 cut(s)	774
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	2 cut(s)	221, 422
BlsI	GCNGC	2 cut(s)	222, 423
Bme1390I	CCNGG	3 cut(s)	334, 758, 759
BmeT110I	CYCGRG	1 cut(s)	757
BmiI	GGNNCC	5 cut(s)	64, 92, 571, 650, 721
BmrFI	CCNGG	3 cut(s)	334, 758, 759
BmsI	GCATC	1 cut(s)	766
BpiI	GAAGAC	1 cut(s)	759
BpmI	CTGGAG	2 cut(s)	226, 338
BpuMI	CCSGG	2 cut(s)	758, 759
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 585
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	757
BseGI	GGATG	1 cut(s)	603
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	265, 585
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	232, 408
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	620
BsiHKCI	CYCGRG	1 cut(s)	757
BsiSI	CCGG	1 cut(s)	758
BslI	CCNNNNNNNGG	2 cut(s)	265, 585
BsmAI	GTCTC	2 cut(s)	129, 240
BsnI	GGCC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	757
Bsp143I	GATC	6 cut(s)	252, 354, 600, 648, 661, 790
BspACI	CCGC	2 cut(s)	275, 282
BspANI	GGCC	1 cut(s)	620
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	5 cut(s)	64, 92, 571, 650, 721
BspPI	GGATC	3 cut(s)	643, 656, 656
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	6 cut(s)	252, 354, 600, 648, 661, 790
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	351, 364, 803
Bst6I	CTCTTC	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	474, 819
BstF5I	GGATG	1 cut(s)	603
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	2 cut(s)	472, 773
BstKTI	GATC	6 cut(s)	255, 357, 603, 651, 664, 793
BstMAI	GTCTC	2 cut(s)	129, 240
BstMBI	GATC	6 cut(s)	252, 354, 600, 648, 661, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstNI	CCWGG	1 cut(s)	334
BstSCI	CCNGG	3 cut(s)	332, 756, 757
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	232, 408
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	2 cut(s)	252, 648
BstYI	RGATCY	2 cut(s)	252, 648
BsuRI	GGCC	1 cut(s)	620
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	808
Cac8I	GCNNGC	2 cut(s)	474, 819
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	472, 773
Cfr9I	CCCGGG	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	190, 265
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	6 cut(s)	254, 356, 602, 650, 663, 792
DpnII	GATC	6 cut(s)	252, 354, 600, 648, 661, 790
EaeI	YGGCCR	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	757
EcoRII	CCWGG	1 cut(s)	332
FaeI	CATG	2 cut(s)	193, 268
FatI	CATG	2 cut(s)	189, 264
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	221, 422
FokI	GGATG	1 cut(s)	610
Fsp4HI	GCNGC	2 cut(s)	221, 422
FspBI	CTAG	3 cut(s)	95, 425, 822
GlaI	GCGC	2 cut(s)	471, 772
GluI	GCNGC	2 cut(s)	221, 422
GsuI	CTGGAG	2 cut(s)	226, 338
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	1 cut(s)	758
HhaI	GCGC	2 cut(s)	472, 773
Hin1II	CATG	2 cut(s)	193, 268
Hin6I	GCGC	2 cut(s)	470, 771
HinP1I	GCGC	2 cut(s)	470, 771
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HindIII	AAGCTT	2 cut(s)	197, 558
HinfI	GANTC	3 cut(s)	25, 479, 676
HpaII	CCGG	1 cut(s)	758
HphI	GGTGA	2 cut(s)	296, 349
Hpy166II	GTNNAC	3 cut(s)	367, 391, 500
Hpy188I	TCNGA	2 cut(s)	30, 688
Hpy188III	TCNNGA	5 cut(s)	190, 243, 539, 665, 794
Hpy8I	GTNNAC	3 cut(s)	367, 391, 500
HpyAV	CCTTC	4 cut(s)	4, 272, 439, 534
HpyCH4III	ACNGT	3 cut(s)	351, 364, 803
HpyCH4V	TGCA	4 cut(s)	71, 220, 611, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
Hsp92II	CATG	2 cut(s)	193, 268
HspAI	GCGC	2 cut(s)	470, 771
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	6 cut(s)	252, 354, 600, 648, 661, 790
LmnI	GCTCC	2 cut(s)	569, 725
Lsp1109I	GCAGC	2 cut(s)	232, 408
LweI	GCATC	1 cut(s)	766
MaeI	CTAG	3 cut(s)	95, 425, 822
MaeIII	GTNAC	3 cut(s)	532, 730, 794
MalI	GATC	6 cut(s)	254, 356, 602, 650, 663, 792
MboI	GATC	6 cut(s)	252, 354, 600, 648, 661, 790
MboII	GAAGA	3 cut(s)	496, 503, 764
MflI	RGATCY	2 cut(s)	252, 648
MluCI	AATT	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	8 cut(s)	250, 313, 316, 377, 480, 647, 662, 842
MroXI	GAANNNNTTC	1 cut(s)	341
MseI	TTAA	4 cut(s)	120, 162, 201, 464
MspI	CCGG	1 cut(s)	758
MspR9I	CCNGG	3 cut(s)	334, 758, 759
MvaI	CCWGG	1 cut(s)	334
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	617
NciI	CCSGG	2 cut(s)	758, 759
NdeII	GATC	6 cut(s)	252, 354, 600, 648, 661, 790
NlaIII	CATG	2 cut(s)	193, 268
NlaIV	GGNNCC	5 cut(s)	64, 92, 571, 650, 721
NmuCI	GTSAC	1 cut(s)	794
PagI	TCATGA	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	3 cut(s)	25, 479, 676
PkrI	GCNGC	2 cut(s)	222, 423
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	5 cut(s)	64, 92, 571, 650, 721
PsuI	RGATCY	2 cut(s)	252, 648
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	4 cut(s)	120, 162, 201, 464
SatI	GCNGC	2 cut(s)	221, 422
Sau3AI	GATC	6 cut(s)	252, 354, 600, 648, 661, 790
ScrFI	CCNGG	3 cut(s)	334, 758, 759
SfaNI	GCATC	1 cut(s)	766
SmaI	CCCGGG	1 cut(s)	759
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	275, 282
SspMI	CTAG	3 cut(s)	95, 425, 822
StyD4I	CCNGG	3 cut(s)	332, 756, 757
TaaI	ACNGT	3 cut(s)	351, 364, 803
TaqI	TCGA	1 cut(s)	482
TasI	AATT	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	25, 479, 676
Tru1I	TTAA	4 cut(s)	120, 162, 201, 464
Tru9I	TTAA	4 cut(s)	120, 162, 201, 464
TscAI	CASTG	1 cut(s)	808
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	2 cut(s)	220, 421
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	2 cut(s)	444, 639
TspGWI	ACGGA	1 cut(s)	718
TspMI	CCCGGG	1 cut(s)	757
TspRI	CASTG	1 cut(s)	808
XapI	RAATTY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	745
XmaI	CCCGGG	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	95, 425, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.