Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

61270061 .. 61271377

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGACAAGAAGTCGTCGGTGTTGATGCAGAAGTTCAAAGTTGAGAAACTTTTAGGGCAAGGTAACTTTGCAAAGGTCTATAGCGCAACGAACCTTGAAACCAATCAGAGTGTAGCCATTAAGGTAATCAGCAAAGACATGGTTGTCAAAACTGGACTGATTGATCAGACCAAAAGAGAGATTACTGCTATGAGATTGCTTAAACACCCAAACATAGTGCAGCTATATGAAGTCATGGCCTCCAAAGCCAAGATCTACCTTGTCATGGAATACGCAAAAGGCGGTGAGCTTTTTCAAAAGATAAAGAGAGGAAGGCTCAAGGAGGAAGTTGCATGGAATTACTTCCAACAGCTCATCACTGCTGTTGATTTCTGCCACAAAAGAGGTGTTTACCACCGCGATTTGAAGCCCGAGAACTTGCTGCTAGATGAAAATGGAGTGTTGAAGGTATCAGATTTTGGTTTGAGTGCACTTGCTGAGTCGAAGAGGGAAGATGGTTTACTACATACAAATTGTGGCACTCCTTCTTATGTAGCTCCTGAAGTAATCCTCTGTAGAGCCTATGATGGAGCTAAAGCTGATATATGGTCTTGTGGGGTGATCTTGTTTGCACTATTGGCTGGTTATCTTCCCTTCCATGATTCAAATCTAATACATATGTATAAAAAAGTATGTGCATCAGAGTATCAATGTCCCAGGTGGTTTTCGCGTCACGTGAGAAAGCTCTTGCATGGAATCCTCAACCCTAATCCGGATCAAAGGTTTCTTGCTTCGGAGATTATGGAAAGTAGCTGGTTTCAGAAAGGGTTCAACTCCAATTCCATAACAGAAGTGGAAGAGCCAGGTTCGTTGAATGCTGATGGGGGGTGTGATGACTGTGACAGCGAGAACCAAGAGATTATTACACTCACCACTTTGACTGCTTTCGATTTCATATCTCTTGCAAGTGAACTTGATTTATCTGGCTTGATGATGCAAACGGATTCAAAGAAAGCAATGCTCTTCACATCAGCGCAATCTGCCACATCCATCATGTCGAAGCTGAGGGAGATTACTCGGAAACTGAAGCTGAAAGTGAAGAAAGAAGGAGCATCACTGAATTCCGAAATTTTTGAGTTCACTCCATCCTTTCATCTTGTGGAGATGAAGAAATCTAACGGAGATACATTCGAGTTTAGGAAGATGGTAGAAGAGGATATAAGGCCGGCTCTCAAAGACGTCATATGGGCATGGCAGGGTGAGCGCAGTAATAACAACAGCAGCATCTGCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

424

Amino Acids

47.95

Weight (kDa)

7.96

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 266	1.1e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	13 - 262	3e-40	Protein tyrosine and serine/threonine kinase
NAF	PF03822	304 - 361	8.8e-15	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	1221
AccII	CGCG	2 cut(s)	399, 709
AccIII	TCCGGA	1 cut(s)	751
AciI	CCGC	2 cut(s)	282, 397
AclWI	GGATC	1 cut(s)	762
AcsI	RAATTY	2 cut(s)	1099, 1107
AcuI	CTGAAG	2 cut(s)	561, 1085
AcvI	CACGTG	1 cut(s)	715
AcyI	GRCGYC	1 cut(s)	1218
AfiI	CCNNNNNNNGG	2 cut(s)	265, 751
AgsI	TTSAA	9 cut(s)	37, 98, 296, 406, 445, 645, 811, 853, 987
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	695, 841
Alw21I	GWGCWC	1 cut(s)	472
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	762
AlwNI	CAGNNNCTG	1 cut(s)	1266
Ama87I	CYCGRG	1 cut(s)	410
Aor13HI	TCCGGA	1 cut(s)	751
AoxI	GGCC	2 cut(s)	237, 1202
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	220, 421, 1260
ApoI	RAATTY	2 cut(s)	1099, 1107
Asp700I	GAANNNNTTC	2 cut(s)	341, 806
AspLEI	GCGC	3 cut(s)	86, 1015, 1245
AsuHPI	GGTGA	4 cut(s)	296, 610, 901, 1250
AvaI	CYCGRG	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	472
BarI	GAAGNNNNNNTAC	2 cut(s)	483, 515
BbrPI	CACGTG	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	472
BbvCI	CCTCAGC	1 cut(s)	1043
BbvI	GCAGC	2 cut(s)	232, 408
BccI	CCATC	6 cut(s)	488, 560, 854, 1037, 1132, 1177
BciT130I	CCWGG	2 cut(s)	697, 843
BclI	TGATCA	1 cut(s)	163
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	2 cut(s)	79, 553
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	3 cut(s)	221, 422, 1261
BlsI	GCNGC	3 cut(s)	222, 423, 1262
Bme1390I	CCNGG	2 cut(s)	697, 843
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	410
BmrFI	CCNGG	2 cut(s)	697, 843
BmsI	GCATC	4 cut(s)	15, 686, 963, 1100
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
Bpu10I	CCTNAGC	1 cut(s)	1043
BpuEI	CTTGAG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	715
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	1218
BsaJI	CCNNGG	1 cut(s)	695
BsaWI	WCCGGW	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	2 cut(s)	265, 751
Bse118I	RCCGGY	1 cut(s)	1204
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	1002
Bse8I	GATNNNNATC	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	751
BseBI	CCWGG	2 cut(s)	697, 843
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	2 cut(s)	1025, 1124
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	2 cut(s)	265, 751
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	2 cut(s)	468, 1034
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	2 cut(s)	232, 408
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	2 cut(s)	399, 709
BshFI	GGCC	2 cut(s)	239, 1204
BsiHKAI	GWGCWC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	752, 1205
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	2 cut(s)	265, 751
BsmFI	GGGAC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	859
BsnI	GGCC	2 cut(s)	239, 1204
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp13I	TCCGGA	1 cut(s)	751
Bsp143I	GATC	4 cut(s)	163, 252, 600, 754
BspACI	CCGC	2 cut(s)	282, 397
BspANI	GGCC	2 cut(s)	239, 1204
BspCNI	CTCAG	2 cut(s)	469, 1035
BspEI	TCCGGA	1 cut(s)	751
BspFNI	CGCG	2 cut(s)	399, 709
BspPI	GGATC	1 cut(s)	762
BspQI	GCTCTTC	2 cut(s)	831, 1007
BsrDI	GCAATG	1 cut(s)	1002
BsrFI	RCCGGY	1 cut(s)	1204
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	1204
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	4 cut(s)	163, 252, 600, 754
BssNI	GRCGYC	1 cut(s)	1218
Bst2UI	CCWGG	2 cut(s)	697, 843
Bst4CI	ACNGT	1 cut(s)	878
Bst6I	CTCTTC	4 cut(s)	479, 831, 1007, 1185
BstACI	GRCGYC	1 cut(s)	1218
BstAPI	GCANNNNNTGC	1 cut(s)	1266
BstBAI	YACGTR	1 cut(s)	715
BstC8I	GCNNGC	1 cut(s)	1206
BstDEI	CTNAG	2 cut(s)	477, 1043
BstF5I	GGATG	2 cut(s)	1025, 1124
BstFNI	CGCG	2 cut(s)	399, 709
BstHHI	GCGC	3 cut(s)	86, 1015, 1245
BstKTI	GATC	4 cut(s)	166, 255, 603, 757
BstMBI	GATC	4 cut(s)	163, 252, 600, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	245, 617, 1019, 1240, 1266
BstNI	CCWGG	2 cut(s)	697, 843
BstSCI	CCNGG	2 cut(s)	695, 841
BstSFI	CTRYAG	2 cut(s)	79, 553
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	2 cut(s)	399, 709
BstV1I	GCAGC	2 cut(s)	232, 408
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	2 cut(s)	239, 1204
BtsCI	GGATG	2 cut(s)	1025, 1124
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	357, 1094
Cac8I	GCNNGC	1 cut(s)	1206
CaiI	CAGNNNCTG	1 cut(s)	1266
CfoI	GCGC	3 cut(s)	86, 1015, 1245
Cfr10I	RCCGGY	1 cut(s)	1204
CseI	GACGC	1 cut(s)	698
CviAII	CATG	8 cut(s)	139, 235, 265, 333, 638, 731, 1033, 1230
DdeI	CTNAG	2 cut(s)	477, 1043
DpnI	GATC	4 cut(s)	165, 254, 602, 756
DpnII	GATC	4 cut(s)	163, 252, 600, 754
DrdI	GACNNNNNNGTC	1 cut(s)	143
DriI	GACNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	4 cut(s)	479, 831, 1007, 1185
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	4 cut(s)	479, 831, 1007, 1185
Eco57I	CTGAAG	2 cut(s)	561, 1085
Eco72I	CACGTG	1 cut(s)	715
Eco88I	CYCGRG	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	1099
EcoRII	CCWGG	2 cut(s)	695, 841
FaeI	CATG	8 cut(s)	142, 238, 268, 336, 641, 734, 1036, 1233
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	8 cut(s)	138, 234, 264, 332, 637, 730, 1032, 1229
FauNDI	CATATG	2 cut(s)	657, 1223
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	221, 422, 1261
FokI	GGATG	2 cut(s)	1012, 1111
Fsp4HI	GCNGC	3 cut(s)	221, 422, 1261
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	3 cut(s)	85, 1014, 1244
GluI	GCNGC	3 cut(s)	221, 422, 1261
HaeIII	GGCC	2 cut(s)	239, 1204
HapII	CCGG	2 cut(s)	752, 1205
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	3 cut(s)	86, 1015, 1245
Hin1I	GRCGYC	1 cut(s)	1218
Hin1II	CATG	8 cut(s)	142, 238, 268, 336, 641, 734, 1036, 1233
Hin6I	GCGC	3 cut(s)	84, 1013, 1243
HinP1I	GCGC	3 cut(s)	84, 1013, 1243
HinfI	GANTC	4 cut(s)	479, 641, 735, 983
HpaII	CCGG	2 cut(s)	752, 1205
HphI	GGTGA	4 cut(s)	296, 610, 901, 1250
Hpy166II	GTNNAC	5 cut(s)	391, 470, 500, 950, 1119
Hpy188I	TCNGA	8 cut(s)	108, 168, 454, 682, 775, 801, 1059, 1105
Hpy188III	TCNNGA	2 cut(s)	539, 752
Hpy8I	GTNNAC	5 cut(s)	391, 470, 500, 950, 1119
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	5 cut(s)	306, 439, 534, 643, 1079
HpyCH4III	ACNGT	1 cut(s)	878
HpyCH4IV	ACGT	2 cut(s)	714, 1218
HpyF10VI	GCNNNNNNNGC	5 cut(s)	245, 617, 1019, 1240, 1266
HpyF3I	CTNAG	2 cut(s)	477, 1043
HpySE526I	ACGT	2 cut(s)	714, 1218
Hsp92I	GRCGYC	1 cut(s)	1218
Hsp92II	CATG	8 cut(s)	142, 238, 268, 336, 641, 734, 1036, 1233
HspAI	GCGC	3 cut(s)	84, 1013, 1243
Kpn2I	TCCGGA	1 cut(s)	751
KroI	GCCGGC	1 cut(s)	1204
KroNI	GCCGGC	1 cut(s)	1206
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	163, 252, 600, 754
LguI	GCTCTTC	2 cut(s)	831, 1007
LmnI	GCTCC	3 cut(s)	541, 569, 1088
Lsp1109I	GCAGC	2 cut(s)	232, 408
LweI	GCATC	4 cut(s)	15, 686, 963, 1100
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	2 cut(s)	714, 1218
MaeIII	GTNAC	3 cut(s)	62, 710, 878
MalI	GATC	4 cut(s)	165, 254, 602, 756
MboI	GATC	4 cut(s)	163, 252, 600, 754
MboII	GAAGA	9 cut(s)	496, 503, 620, 848, 994, 1090, 1159, 1192, 1202
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	5 cut(s)	337, 511, 817, 1099, 1107
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	9 cut(s)	250, 302, 316, 377, 480, 560, 749, 1038, 1186
MroI	TCCGGA	1 cut(s)	751
MroNI	GCCGGC	1 cut(s)	1204
MroXI	GAANNNNTTC	2 cut(s)	341, 806
MseI	TTAA	2 cut(s)	120, 201
MspI	CCGG	2 cut(s)	752, 1205
MspR9I	CCNGG	2 cut(s)	697, 843
Mva1269I	GAATGC	1 cut(s)	859
MvaI	CCWGG	2 cut(s)	697, 843
MvnI	CGCG	2 cut(s)	399, 709
MwoI	GCNNNNNNNGC	5 cut(s)	245, 617, 1019, 1240, 1266
NaeI	GCCGGC	1 cut(s)	1206
NdeI	CATATG	2 cut(s)	657, 1223
NdeII	GATC	4 cut(s)	163, 252, 600, 754
NgoMIV	GCCGGC	1 cut(s)	1204
NlaIII	CATG	8 cut(s)	142, 238, 268, 336, 641, 734, 1036, 1233
NmuCI	GTSAC	2 cut(s)	710, 878
PciSI	GCTCTTC	2 cut(s)	831, 1007
PctI	GAATGC	1 cut(s)	859
PdiI	GCCGGC	1 cut(s)	1206
PdmI	GAANNNNTTC	2 cut(s)	341, 806
PfeI	GAWTC	3 cut(s)	641, 735, 983
PkrI	GCNGC	3 cut(s)	222, 423, 1262
PleI	GAGTC	1 cut(s)	487
PmaCI	CACGTG	1 cut(s)	715
PmlI	CACGTG	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	487
Ppu21I	YACGTR	1 cut(s)	715
Psp6I	CCWGG	2 cut(s)	695, 841
PspCI	CACGTG	1 cut(s)	715
PspGI	CCWGG	2 cut(s)	695, 841
PstNI	CAGNNNCTG	1 cut(s)	1266
PsuI	RGATCY	1 cut(s)	252
SapI	GCTCTTC	2 cut(s)	831, 1007
SaqAI	TTAA	2 cut(s)	120, 201
SatI	GCNGC	3 cut(s)	221, 422, 1261
Sau3AI	GATC	4 cut(s)	163, 252, 600, 754
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	697, 843
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	4 cut(s)	15, 686, 963, 1100
SfcI	CTRYAG	2 cut(s)	79, 553
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	5 cut(s)	337, 511, 817, 1099, 1107
SsiI	CCGC	2 cut(s)	282, 397
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	2 cut(s)	695, 841
TaaI	ACNGT	1 cut(s)	878
TaiI	ACGT	2 cut(s)	717, 1221
TaqI	TCGA	4 cut(s)	482, 927, 1037, 1170
TasI	AATT	5 cut(s)	337, 511, 817, 1099, 1107
TfiI	GAWTC	3 cut(s)	641, 735, 983
Tru1I	TTAA	2 cut(s)	120, 201
Tru9I	TTAA	2 cut(s)	120, 201
TscAI	CASTG	2 cut(s)	364, 1101
TseFI	GTSAC	2 cut(s)	710, 878
TseI	GCWGC	3 cut(s)	220, 421, 1260
Tsp45I	GTSAC	2 cut(s)	710, 878
TspDTI	ATGAA	5 cut(s)	243, 444, 922, 1121, 1160
TspGWI	ACGGA	2 cut(s)	995, 1173
TspRI	CASTG	2 cut(s)	364, 1101
VneI	GTGCAC	1 cut(s)	468
XapI	RAATTY	2 cut(s)	1099, 1107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	829
XmnI	GAANNNNTTC	2 cut(s)	341, 806
XspI	CTAG	1 cut(s)	425
ZraI	GACGTC	1 cut(s)	1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.