Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

60905478 .. 60905951

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG376500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAGAATGCTTAAACACCCAAACATAGTGCAGCTACATGATGTCCTAGCCTCCAGAGACAAGATCTACCTTGTCATGGAATACGCGGAAGGCGGTGAGCTTTTTCACAAAATATTAAAAGGAAAGCTGGAGGAGGAAGTAGCCAGGAACGACTTCCAACAGTTGATCACCACAGTTGACTTCTGCCACAGGAGAGGTGTTTACCACCACGATTTGAAGCCCGAAAACTTGCTGCTAGATGAAAATGGAGTGTTGAAGGTATCGGATTTTGGGTTAAGTGCGCTTGCTGAATCGAAGAGGGAAGATGGTTTACTACATACAAGTTGTGGCACACCTTCTTATGTAGCTCCTGAAGTGTTGGGCAGGAAAGCCTATGATGGAGCCAAAGCCGATATATGGTCTTGTGGGGTGATCTTGTTTGCACTATTGGCCGGTCATGTTCCGTTCCGTGATCCAAATATTACACTCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

157

Amino Acids

17.61

Weight (kDa)

6.04

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 151	1.9e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 150	2e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AciI	CCGC	2 cut(s)	86, 93
AclWI	GGATC	1 cut(s)	446
AcoI	YGGCCR	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	76, 396
AgsI	TTSAA	2 cut(s)	217, 256
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	4 cut(s)	34, 100, 127, 347
AluI	AGCT	4 cut(s)	34, 100, 127, 347
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	2 cut(s)	31, 232
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	107, 160, 421
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BauI	CACGAG	1 cut(s)	467
BbvI	GCAGC	2 cut(s)	43, 219
BccI	CCATC	2 cut(s)	299, 371
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	47, 236
BglII	AGATCT	1 cut(s)	63
BisI	GCNGC	2 cut(s)	32, 233
BlsI	GCNGC	2 cut(s)	33, 234
Bme1390I	CCNGG	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	145
BpmI	CTGGAG	2 cut(s)	37, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 396
Bse118I	RCCGGY	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	76, 396
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	43, 219
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	76, 396
BsmAI	GTCTC	1 cut(s)	51
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	431
Bsp143I	GATC	4 cut(s)	63, 165, 411, 451
BspACI	CCGC	2 cut(s)	86, 93
BspANI	GGCC	1 cut(s)	431
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	431
BssAI	RCCGGY	1 cut(s)	431
BssMI	GATC	4 cut(s)	63, 165, 411, 451
BssSI	CACGAG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	467
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	162, 175
Bst6I	CTCTTC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	4 cut(s)	66, 168, 414, 454
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	4 cut(s)	63, 165, 411, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	43, 219
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	431
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	431
CviAII	CATG	3 cut(s)	38, 76, 437
DpnI	GATC	4 cut(s)	65, 167, 413, 453
DpnII	GATC	4 cut(s)	63, 165, 411, 451
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	143
FaeI	CATG	3 cut(s)	41, 79, 440
FaiI	YATR	9 cut(s)	26, 39, 77, 318, 342, 375, 395, 397, 438
FatI	CATG	3 cut(s)	37, 75, 436
FbaI	TGATCA	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	32, 233
Fsp4HI	GCNGC	2 cut(s)	32, 233
FspBI	CTAG	2 cut(s)	47, 236
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	32, 233
GsuI	CTGGAG	2 cut(s)	37, 149
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	1 cut(s)	432
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	41, 79, 440
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	432
HphI	GGTGA	3 cut(s)	107, 160, 421
Hpy166II	GTNNAC	3 cut(s)	178, 202, 311
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	2 cut(s)	54, 350
Hpy8I	GTNNAC	3 cut(s)	178, 202, 311
HpyAV	CCTTC	3 cut(s)	83, 250, 345
HpyCH4III	ACNGT	2 cut(s)	162, 175
HpyCH4V	TGCA	2 cut(s)	31, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	41, 79, 440
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	63, 165, 411, 451
LmnI	GCTCC	2 cut(s)	352, 380
LpnPI	CCDG	8 cut(s)	67, 113, 130, 157, 175, 349, 363, 445
Lsp1109I	GCAGC	2 cut(s)	43, 219
MaeI	CTAG	2 cut(s)	47, 236
MalI	GATC	4 cut(s)	65, 167, 413, 453
MboI	GATC	4 cut(s)	63, 165, 411, 451
MboII	GAAGA	2 cut(s)	307, 314
MflI	RGATCY	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	61, 124, 127, 188, 291
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	3 cut(s)	12, 116, 275
MspI	CCGG	1 cut(s)	432
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	428
NdeII	GATC	4 cut(s)	63, 165, 411, 451
NlaIII	CATG	3 cut(s)	41, 79, 440
NlaIV	GGNNCC	1 cut(s)	382
PctI	GAATGC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	33, 234
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	12, 116, 275
SatI	GCNGC	2 cut(s)	32, 233
Sau3AI	GATC	4 cut(s)	63, 165, 411, 451
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	8 cut(s)	36, 72, 102, 129, 199, 261, 337, 349
SsiI	CCGC	2 cut(s)	86, 93
SspI	AATATT	2 cut(s)	114, 460
SspMI	CTAG	2 cut(s)	47, 236
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	162, 175
TaqI	TCGA	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	12, 116, 275
Tru9I	TTAA	3 cut(s)	12, 116, 275
TseI	GCWGC	2 cut(s)	31, 232
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	2 cut(s)	432, 437
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	2 cut(s)	47, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.