Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

25435015 .. 25435248

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGCCACGAAAGCGAAGATCTACTTCGTCATGGAGTACGTCCGCGGCGGCGAGCTCTTTAACAAGGTCGCCAAGGGCCGGCTGAAGGAGGAAGTTGCGAGAAAATATTTCCAGCAGCTAATCTCCGCCGTCGGATTCTGCCACGCCCGCGGCGTCTACCACCGCGATTTGAAGCCGGAGAACCTATTGCTCGACGAGAACGGATCGATCTCAAGGTTTCGGATTTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

78

Amino Acids

8.88

Weight (kDa)

9.77

Isoelectric Point (pI)

22.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 70	5.5e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	4 - 70	3.7e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	3 cut(s)	45, 150, 165
AciI	CCGC	7 cut(s)	43, 45, 48, 126, 148, 150, 163
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	78, 85
AgsI	TTSAA	1 cut(s)	172
AluBI	AGCT	2 cut(s)	55, 118
AluI	AGCT	2 cut(s)	55, 118
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	2 cut(s)	3, 76
ApeKI	GCWGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	18
BisI	GCNGC	4 cut(s)	46, 49, 116, 151
BlsI	GCNGC	4 cut(s)	47, 50, 117, 152
BmgT120I	GGNCC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	43, 72, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 85
Bse118I	RCCGGY	1 cut(s)	78
BseCI	ATCGAT	1 cut(s)	206
BseDI	CCNNGG	3 cut(s)	43, 72, 148
BseLI	CCNNNNNNNGG	2 cut(s)	78, 85
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	3 cut(s)	45, 150, 165
BshFI	GGCC	2 cut(s)	5, 78
BshVI	ATCGAT	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	79, 176
BslI	CCNNNNNNNGG	2 cut(s)	78, 85
BsnI	GGCC	2 cut(s)	5, 78
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	18, 203, 207
BspACI	CCGC	7 cut(s)	43, 45, 48, 126, 148, 150, 163
BspANI	GGCC	2 cut(s)	5, 78
BspDI	ATCGAT	1 cut(s)	206
BspFNI	CGCG	3 cut(s)	45, 150, 165
BspPI	GGATC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	43, 72, 148
BssMI	GATC	3 cut(s)	18, 203, 207
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	3 cut(s)	53, 80, 148
BstDSI	CCRYGG	2 cut(s)	43, 148
BstFNI	CGCG	3 cut(s)	45, 150, 165
BstKTI	GATC	3 cut(s)	21, 206, 210
BstMBI	GATC	3 cut(s)	18, 203, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 147
BstUI	CGCG	3 cut(s)	45, 150, 165
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
Bsu15I	ATCGAT	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	5, 78
BsuTUI	ATCGAT	1 cut(s)	206
BtgI	CCRYGG	2 cut(s)	43, 148
Cac8I	GCNNGC	3 cut(s)	53, 80, 148
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	1 cut(s)	76
Cfr42I	CCGCGG	2 cut(s)	46, 151
ClaI	ATCGAT	1 cut(s)	206
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	6 cut(s)	5, 55, 78, 82, 118, 175
CviKI_1	RGCY	6 cut(s)	5, 55, 78, 82, 118, 175
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	3 cut(s)	20, 205, 209
DpnII	GATC	3 cut(s)	18, 203, 207
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	34
FaiI	YATR	1 cut(s)	32
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	46, 49, 116, 151
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	4 cut(s)	46, 49, 116, 151
GluI	GCNGC	4 cut(s)	46, 49, 116, 151
HaeIII	GGCC	2 cut(s)	5, 78
HapII	CCGG	2 cut(s)	79, 176
HgaI	GACGC	1 cut(s)	142
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	2 cut(s)	79, 176
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	134, 222
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	2 cut(s)	134, 197
HpyAV	CCTTC	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 147
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	78
KroNI	GCCGGC	1 cut(s)	80
KspI	CCGCGG	2 cut(s)	46, 151
Kzo9I	GATC	3 cut(s)	18, 203, 207
LpnPI	CCDG	3 cut(s)	92, 125, 189
Lsp1109I	GCAGC	1 cut(s)	127
MaeII	ACGT	1 cut(s)	39
MalI	GATC	3 cut(s)	20, 205, 209
MboI	GATC	3 cut(s)	18, 203, 207
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	1 cut(s)	82
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	45, 150
MspI	CCGG	2 cut(s)	79, 176
MvnI	CGCG	3 cut(s)	45, 150, 165
MwoI	GCNNNNNNNGC	2 cut(s)	11, 147
NaeI	GCCGGC	1 cut(s)	80
NdeII	GATC	3 cut(s)	18, 203, 207
NgoMIV	GCCGGC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	135
PkrI	GCNGC	4 cut(s)	47, 50, 117, 152
Psp124BI	GAGCTC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacI	GAGCTC	1 cut(s)	57
SacII	CCGCGG	2 cut(s)	46, 151
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	4 cut(s)	46, 49, 116, 151
Sau3AI	GATC	3 cut(s)	18, 203, 207
Sau96I	GGNCC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	6 cut(s)	42, 57, 69, 120, 186, 218
Sfr303I	CCGCGG	2 cut(s)	46, 151
SgrBI	CCGCGG	2 cut(s)	46, 151
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SsiI	CCGC	7 cut(s)	43, 45, 48, 126, 148, 150, 163
SspI	AATATT	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	192, 206
TauI	GCSGC	3 cut(s)	48, 51, 153
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseI	GCWGC	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.