Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

55258554 .. 55265263

Gene Structure 6710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTTTACAATTGCTTTAAAAGGGTCCGCTTCCTACCCACTACTTCAAACTCTTCTGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCTGCTGTGTCTCCACCGGGGTCGTCGCAGCAATTGGAAGACCCTACAAGACTATCGGACCTTGACATTATCATATCTAGAGTTCTGTTGGAAGTACGATGATCAAGTACTATTGTCTCTTTCACATGATCAACCATGTAATAGCATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCATCATCAAGCGCAAGATGGTCGACCGGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGGACCAAGATTTATATAATATTGGAGTTCATTACGAGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGACGTCTTAGCGAAAGTGAAGCCGGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTATGCCGGTCAAGGAAACAAAAGTCACCAGGCCACCAACAAAGAGAATCCCTTTTTCTTCCACTATCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.58

Weight (kDa)

6.03

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	2 cut(s)	185, 198
AfiI	CCNNNNNNNGG	1 cut(s)	516
AgsI	TTSAA	2 cut(s)	47, 79
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	3 cut(s)	241, 326, 486
AluI	AGCT	3 cut(s)	241, 326, 486
Alw26I	GTCTC	2 cut(s)	104, 210
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	1 cut(s)	117
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	3 cut(s)	24, 147, 376
AsuC2I	CCSGG	2 cut(s)	107, 468
AsuHPI	GGTGA	2 cut(s)	427, 539
AvaII	GGWCC	3 cut(s)	24, 147, 376
BauI	CACGAG	1 cut(s)	357
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	3 cut(s)	279, 281, 487
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	1 cut(s)	551
BclI	TGATCA	2 cut(s)	190, 217
BcnI	CCSGG	2 cut(s)	107, 468
BcoDI	GTCTC	2 cut(s)	104, 210
BfaI	CTAG	2 cut(s)	167, 366
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
BmcAI	AGTACT	1 cut(s)	198
Bme1390I	CCNGG	3 cut(s)	107, 468, 551
Bme18I	GGWCC	3 cut(s)	24, 147, 376
BmgT120I	GGNCC	3 cut(s)	24, 147, 376
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	3 cut(s)	107, 468, 551
BmsI	GCATC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	134
BpuMI	CCSGG	2 cut(s)	107, 468
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse118I	RCCGGY	1 cut(s)	527
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	296
BsiSI	CCGG	4 cut(s)	106, 296, 467, 528
BslI	CCNNNNNNNGG	1 cut(s)	516
BsmAI	GTCTC	2 cut(s)	104, 210
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	554
Bsp143I	GATC	3 cut(s)	190, 217, 298
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	554
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	3 cut(s)	190, 217, 298
BssNI	GRCGYC	1 cut(s)	447
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	551
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	193, 220, 301
BstMAI	GTCTC	2 cut(s)	104, 210
BstMBI	GATC	3 cut(s)	190, 217, 298
BstMCI	CGRYCG	1 cut(s)	296
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	3 cut(s)	105, 466, 549
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	335
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	3 cut(s)	24, 147, 376
Csp6I	GTAC	2 cut(s)	184, 197
CviAII	CATG	3 cut(s)	215, 225, 442
CviJI	RGCY	5 cut(s)	241, 326, 466, 486, 554
CviKI_1	RGCY	5 cut(s)	241, 326, 466, 486, 554
CviQI	GTAC	2 cut(s)	184, 197
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	3 cut(s)	192, 219, 300
DpnII	GATC	3 cut(s)	190, 217, 298
DraI	TTTAAA	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	313
Eco47I	GGWCC	3 cut(s)	24, 147, 376
EcoRII	CCWGG	1 cut(s)	549
EcoRV	GATATC	1 cut(s)	313
FaeI	CATG	3 cut(s)	218, 228, 445
FaiI	YATR	9 cut(s)	68, 163, 216, 226, 343, 388, 390, 443, 525
FatI	CATG	3 cut(s)	214, 224, 441
FbaI	TGATCA	2 cut(s)	190, 217
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	1 cut(s)	322
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	2 cut(s)	167, 366
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	4 cut(s)	106, 296, 467, 528
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	3 cut(s)	218, 228, 445
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	3 cut(s)	371, 473, 568
HpaII	CCGG	4 cut(s)	106, 296, 467, 528
HphI	GGTGA	2 cut(s)	427, 539
Hpy166II	GTNNAC	2 cut(s)	6, 293
Hpy188I	TCNGA	2 cut(s)	147, 376
Hpy188III	TCNNGA	3 cut(s)	167, 302, 590
Hpy8I	GTNNAC	2 cut(s)	6, 293
Hpy99I	CGWCG	1 cut(s)	117
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	1 cut(s)	356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	451
HpySE526I	ACGT	1 cut(s)	447
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	3 cut(s)	218, 228, 445
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	2 cut(s)	190, 217
Kzo9I	GATC	3 cut(s)	190, 217, 298
LpnPI	CCDG	6 cut(s)	119, 309, 480, 536, 541, 563
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	344
MaeI	CTAG	2 cut(s)	167, 366
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	3 cut(s)	192, 219, 300
MboI	GATC	3 cut(s)	190, 217, 298
MboII	GAAGA	4 cut(s)	44, 139, 468, 571
MfeI	CAATTG	3 cut(s)	9, 121, 263
MluCI	AATT	4 cut(s)	9, 121, 263, 418
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	3 cut(s)	158, 354, 504
MnlI	CCTC	5 cut(s)	81, 298, 325, 353, 403
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	1 cut(s)	340
MspI	CCGG	4 cut(s)	106, 296, 467, 528
MspR9I	CCNGG	3 cut(s)	107, 468, 551
MunI	CAATTG	3 cut(s)	9, 121, 263
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	332
NciI	CCSGG	2 cut(s)	107, 468
NdeII	GATC	3 cut(s)	190, 217, 298
NlaIII	CATG	3 cut(s)	218, 228, 445
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	545
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	473, 568
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	3 cut(s)	24, 147, 376
RsaI	GTAC	2 cut(s)	185, 198
RsaNI	GTAC	2 cut(s)	184, 197
RseI	CAYNNNNRTG	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	3 cut(s)	190, 217, 298
Sau96I	GGNCC	3 cut(s)	24, 147, 376
ScaI	AGTACT	1 cut(s)	198
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	107, 468, 551
SetI	ASST	8 cut(s)	73, 152, 243, 328, 364, 414, 450, 488
SfaNI	GCATC	1 cut(s)	344
SinI	GGWCC	3 cut(s)	24, 147, 376
SmiMI	CAYNNNNRTG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	4 cut(s)	9, 121, 263, 418
SsiI	CCGC	1 cut(s)	27
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	2 cut(s)	167, 366
StyD4I	CCNGG	3 cut(s)	105, 466, 549
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	1 cut(s)	292
TasI	AATT	4 cut(s)	9, 121, 263, 418
TatI	WGTACW	1 cut(s)	196
TfiI	GAWTC	2 cut(s)	473, 568
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	1 cut(s)	117
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	4 cut(s)	248, 336, 392, 427
VpaK11BI	GGWCC	3 cut(s)	24, 147, 376
XbaI	TCTAGA	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	292
XspI	CTAG	2 cut(s)	167, 366
ZraI	GACGTC	1 cut(s)	448
ZrmI	AGTACT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.