Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

21515523 .. 21519574

Gene Structure 4052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00301140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTACACGATCGGGGAGAAACTTCGAGGGCGTCCGACCGACAACCGGCCGAGATGGGTCTGCTTCCTACCCACTACTTCAAACTCTTCTGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCCGCGTGTCTCTACCGGGGTCGTCGCAAAGAATTGGAAGACCCTACAAGACTATCGGACCTTGACATTATCATATCTAGAGTTCCTGTTGGAAGTACCGATGATCAAGTACTATTGTCTCTTTCACATGATCAACCATGTAATAGCATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCATCATCAAGCGCAAGATGGTCGACCGCATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGGACCAAGATTTATATAATATTGGAGTTCATTACGGGTGGTGAATTGTTTGATAAAATCGCTCATCATGGACGTCTTAGCGAAAGTGAAGCCGGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTGATTCTCTTGGAAATTTAAGAATTTCAGATTTCGTCCGAGTGCATTGTCCGAACAAGGAGTCAGCCTCCTTCGCACAACTTATGGGACCCCTAACTATGTTGCACCCGAGGTCCTCGGTCACAAGGGTTATGATGGTGCCGTGGCAGATGTTTGGTCCTGTGTGGTCATCCTTTATGTTCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

260

Amino Acids

29.92

Weight (kDa)

9.72

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	106 - 210	8.3e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	109 - 210	1.5e-17	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	733
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	130
AciI	CCGC	2 cut(s)	128, 334
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	610, 618
AcyI	GRCGYC	2 cut(s)	33, 484
AfaI	GTAC	2 cut(s)	222, 236
AfiI	CCNNNNNNNGG	2 cut(s)	47, 553
AgsI	TTSAA	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	279, 364, 523
AluI	AGCT	3 cut(s)	279, 364, 523
Alw26I	GTCTC	2 cut(s)	139, 248
Ama87I	CYCGRG	1 cut(s)	703
AoxI	GGCC	1 cut(s)	49
ApoI	RAATTY	2 cut(s)	610, 618
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	5 cut(s)	183, 414, 683, 708, 752
AsuC2I	CCSGG	2 cut(s)	142, 505
AsuHPI	GGTGA	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	703
AvaII	GGWCC	5 cut(s)	183, 414, 683, 708, 752
BanI	GGYRCC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	170
BccI	CCATC	5 cut(s)	50, 317, 319, 524, 724
BceAI	ACGGC	1 cut(s)	721
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BclI	TGATCA	2 cut(s)	228, 255
BcnI	CCSGG	2 cut(s)	142, 505
BcoDI	GTCTC	2 cut(s)	139, 248
BfaI	CTAG	2 cut(s)	203, 404
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	142, 505
Bme18I	GGWCC	5 cut(s)	183, 414, 683, 708, 752
BmeT110I	CYCGRG	1 cut(s)	703
BmgT120I	GGNCC	5 cut(s)	183, 414, 683, 708, 752
BmiI	GGNNCC	3 cut(s)	684, 685, 735
BmrFI	CCNGG	2 cut(s)	142, 505
BmsI	GCATC	2 cut(s)	345, 382
BpiI	GAAGAC	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpuMI	CCSGG	2 cut(s)	142, 505
BsaHI	GRCGYC	2 cut(s)	33, 484
BsaJI	CCNNGG	4 cut(s)	141, 704, 711, 737
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 553
Bse118I	RCCGGY	1 cut(s)	47
BseDI	CCNNGG	4 cut(s)	141, 704, 711, 737
BseGI	GGATG	3 cut(s)	124, 373, 764
BseLI	CCNNNNNNNGG	2 cut(s)	47, 553
BseX3I	CGGCCG	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	130
Bsh1285I	CGRYCG	4 cut(s)	14, 41, 52, 334
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	733
BsiEI	CGRYCG	4 cut(s)	14, 41, 52, 334
BsiHKCI	CYCGRG	1 cut(s)	703
BsiSI	CCGG	4 cut(s)	48, 141, 504, 581
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	2 cut(s)	47, 553
BsmAI	GTCTC	2 cut(s)	139, 248
BsmFI	GGGAC	1 cut(s)	696
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	703
Bsp143I	GATC	3 cut(s)	11, 228, 255
BspACI	CCGC	2 cut(s)	128, 334
BspANI	GGCC	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	130
BspHI	TCATGA	1 cut(s)	779
BspLI	GGNNCC	3 cut(s)	684, 685, 735
BspT107I	GGYRCC	1 cut(s)	733
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	4 cut(s)	141, 704, 711, 737
BssMI	GATC	3 cut(s)	11, 228, 255
BssNI	GRCGYC	2 cut(s)	33, 484
BssSI	CACGAG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	395
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	2 cut(s)	33, 484
BstDEI	CTNAG	1 cut(s)	488
BstDSI	CCRYGG	1 cut(s)	737
BstF5I	GGATG	3 cut(s)	124, 373, 764
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	3 cut(s)	14, 231, 258
BstMAI	GTCTC	2 cut(s)	139, 248
BstMBI	GATC	3 cut(s)	11, 228, 255
BstMCI	CGRYCG	4 cut(s)	14, 41, 52, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 668
BstSCI	CCNGG	2 cut(s)	140, 503
BstUI	CGCG	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	170
BstZI	CGGCCG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	737
BtsCI	GGATG	3 cut(s)	124, 373, 764
CciI	TCATGA	1 cut(s)	779
CfoI	GCGC	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	5 cut(s)	183, 414, 683, 708, 752
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	221, 235
CviAII	CATG	4 cut(s)	253, 263, 479, 780
CviJI	RGCY	8 cut(s)	5, 51, 279, 364, 503, 523, 580, 662
CviKI_1	RGCY	8 cut(s)	5, 51, 279, 364, 503, 523, 580, 662
CviQI	GTAC	2 cut(s)	221, 235
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	3 cut(s)	13, 230, 257
DpnII	GATC	3 cut(s)	11, 228, 255
DraI	TTTAAA	1 cut(s)	576
EaeI	YGGCCR	1 cut(s)	49
EagI	CGGCCG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EclXI	CGGCCG	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	351
Eco47I	GGWCC	5 cut(s)	183, 414, 683, 708, 752
Eco52I	CGGCCG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	703
EcoO109I	RGGNCCY	2 cut(s)	683, 708
EcoRV	GATATC	1 cut(s)	351
FaeI	CATG	4 cut(s)	256, 266, 482, 783
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	4 cut(s)	252, 262, 478, 779
FbaI	TGATCA	2 cut(s)	228, 255
FblI	GTMKAC	1 cut(s)	330
FokI	GGATG	3 cut(s)	111, 360, 751
FspBI	CTAG	2 cut(s)	203, 404
GlaI	GCGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	4 cut(s)	48, 141, 504, 581
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	321
Hin1I	GRCGYC	2 cut(s)	33, 484
Hin1II	CATG	4 cut(s)	256, 266, 482, 783
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	409, 510, 599, 656
HpaII	CCGG	4 cut(s)	48, 141, 504, 581
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	6 cut(s)	38, 183, 414, 625, 635, 648
Hpy188III	TCNNGA	3 cut(s)	203, 340, 780
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	676
HpyCH4IV	ACGT	1 cut(s)	484
HpyCH4V	TGCA	3 cut(s)	394, 640, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 668
HpyF3I	CTNAG	1 cut(s)	488
HpySE526I	ACGT	1 cut(s)	484
Hsp92I	GRCGYC	2 cut(s)	33, 484
Hsp92II	CATG	4 cut(s)	256, 266, 482, 783
HspAI	GCGC	1 cut(s)	319
KflI	GGGWCCC	1 cut(s)	683
Ksp22I	TGATCA	2 cut(s)	228, 255
Kzo9I	GATC	3 cut(s)	11, 228, 255
LpnPI	CCDG	6 cut(s)	61, 154, 224, 517, 594, 768
LweI	GCATC	2 cut(s)	345, 382
MaeI	CTAG	2 cut(s)	203, 404
MaeII	ACGT	1 cut(s)	484
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	3 cut(s)	13, 230, 257
MboI	GATC	3 cut(s)	11, 228, 255
MboII	GAAGA	3 cut(s)	80, 175, 505
MfeI	CAATTG	1 cut(s)	301
MluCI	AATT	5 cut(s)	157, 301, 455, 610, 618
MlyI	GAGTC	2 cut(s)	418, 665
MmeI	TCCRAC	4 cut(s)	61, 195, 392, 541
MnlI	CCTC	8 cut(s)	22, 117, 336, 363, 391, 673, 699, 721
MseI	TTAA	2 cut(s)	575, 614
MslI	CAYNNNNRTG	2 cut(s)	129, 378
MspI	CCGG	4 cut(s)	48, 141, 504, 581
MspR9I	CCNGG	2 cut(s)	142, 505
MunI	CAATTG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	272
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	370, 668
NciI	CCSGG	2 cut(s)	142, 505
NdeII	GATC	3 cut(s)	11, 228, 255
NlaIII	CATG	4 cut(s)	256, 266, 482, 783
NlaIV	GGNNCC	3 cut(s)	684, 685, 735
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	715
PagI	TCATGA	1 cut(s)	779
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	510, 599
Ple19I	CGATCG	1 cut(s)	14
PleI	GAGTC	2 cut(s)	417, 664
PpsI	GAGTC	2 cut(s)	417, 664
PpuMI	RGGWCCY	2 cut(s)	683, 708
Psp5II	RGGWCCY	2 cut(s)	683, 708
PspN4I	GGNNCC	3 cut(s)	684, 685, 735
PspPI	GGNCC	5 cut(s)	183, 414, 683, 708, 752
PspPPI	RGGWCCY	2 cut(s)	683, 708
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	222, 236
RsaNI	GTAC	2 cut(s)	221, 235
RseI	CAYNNNNRTG	2 cut(s)	129, 378
SalI	GTCGAC	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	575, 614
Sau3AI	GATC	3 cut(s)	11, 228, 255
Sau96I	GGNCC	5 cut(s)	183, 414, 683, 708, 752
ScaI	AGTACT	1 cut(s)	236
SchI	GAGTC	2 cut(s)	418, 665
ScrFI	CCNGG	2 cut(s)	142, 505
SetI	ASST	8 cut(s)	109, 188, 281, 366, 402, 487, 525, 710
SfaNI	GCATC	2 cut(s)	345, 382
SinI	GGWCC	5 cut(s)	183, 414, 683, 708, 752
SmiMI	CAYNNNNRTG	2 cut(s)	129, 378
Sse9I	AATT	5 cut(s)	157, 301, 455, 610, 618
SsiI	CCGC	2 cut(s)	128, 334
SspI	AATATT	1 cut(s)	432
SspMI	CTAG	2 cut(s)	203, 404
StyD4I	CCNGG	2 cut(s)	140, 503
TaiI	ACGT	1 cut(s)	487
TaqI	TCGA	2 cut(s)	27, 330
TaqII	GACCGA	2 cut(s)	55, 703
TasI	AATT	5 cut(s)	157, 301, 455, 610, 618
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	510, 599
Tru1I	TTAA	2 cut(s)	575, 614
Tru9I	TTAA	2 cut(s)	575, 614
TseFI	GTSAC	1 cut(s)	715
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	3 cut(s)	286, 374, 430
VpaK11BI	GGWCC	5 cut(s)	183, 414, 683, 708, 752
XapI	RAATTY	2 cut(s)	610, 618
XbaI	TCTAGA	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	2 cut(s)	203, 404
ZraI	GACGTC	1 cut(s)	485
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.