Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8250369.1

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 772

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8250369.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgtttatgatgcagatcaagagggagatatccataatgaagcttgtgaggcatccctatgtagttcgtttgcacgaggttctagcgagtcggaccaagatttatataatattggagttcattacgggtggtgaattgtttgataaaatcgttcatcacggacgtcttagcgaagctgaagccaggagattcttccaacagcttattgatggagtggattattgccacagcaagggagtgtatcatagagatttaaagccggaaaatcttttgcttgattctcttggaaatttaagaatttcagatttcggtctgagtgcattgcctgaacaaggagtcagcctccttcgcacaacttgtgggacccctaactatgttgcacctgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

129

Amino Acids

14.81

Weight (kDa)

7.85

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	289, 297
AcuI	CTGAAG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	232, 332
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	3 cut(s)	43, 176, 202
AluI	AGCT	3 cut(s)	43, 176, 202
ApoI	RAATTY	2 cut(s)	289, 297
AspS9I	GGNCC	2 cut(s)	93, 363
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	93, 363
BauI	CACGAG	1 cut(s)	74
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	184
BfaI	CTAG	1 cut(s)	83
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	93, 363
BmgT120I	GGNCC	2 cut(s)	93, 363
BmiI	GGNNCC	2 cut(s)	364, 365
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
BsaBI	GATNNNNATC	1 cut(s)	14
BsaHI	GRCGYC	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 332
Bse3DI	GCAATG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	52
BseJI	GATNNNNATC	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	232, 332
BseMI	GCAATG	1 cut(s)	320
BseMII	CTCAG	2 cut(s)	305, 375
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	232, 332
BsmFI	GGGAC	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	15
BspCNI	CTCAG	2 cut(s)	306, 376
BspLI	GGNNCC	2 cut(s)	364, 365
BsrDI	GCAATG	1 cut(s)	320
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	184
BstACI	GRCGYC	1 cut(s)	163
BstDEI	CTNAG	3 cut(s)	167, 314, 384
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 348
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	93, 363
CviJI	RGCY	6 cut(s)	43, 176, 182, 202, 259, 342
CviKI_1	RGCY	6 cut(s)	43, 176, 182, 202, 259, 342
DdeI	CTNAG	3 cut(s)	167, 314, 384
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
DraI	TTTAAA	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	93, 363
Eco57I	CTGAAG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	182
EcoRV	GATATC	1 cut(s)	30
FaiI	YATR	7 cut(s)	8, 35, 60, 105, 107, 246, 375
FaqI	GGGAC	1 cut(s)	376
FokI	GGATG	1 cut(s)	39
FspBI	CTAG	1 cut(s)	83
HapII	CCGG	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	4 cut(s)	88, 189, 278, 336
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	3 cut(s)	93, 304, 315
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	4 cut(s)	13, 73, 320, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 348
HpyF3I	CTNAG	3 cut(s)	167, 314, 384
HpySE526I	ACGT	1 cut(s)	163
Hsp92I	GRCGYC	1 cut(s)	163
KflI	GGGWCCC	1 cut(s)	363
Kzo9I	GATC	1 cut(s)	15
LpnPI	CCDG	4 cut(s)	169, 196, 273, 339
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	1 cut(s)	163
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	184
MluCI	AATT	3 cut(s)	134, 289, 297
MlyI	GAGTC	2 cut(s)	97, 345
MmeI	TCCRAC	2 cut(s)	71, 220
MnlI	CCTC	4 cut(s)	15, 42, 70, 353
MseI	TTAA	2 cut(s)	254, 293
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	184
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	49, 348
NdeII	GATC	1 cut(s)	15
NlaIV	GGNNCC	2 cut(s)	364, 365
PfeI	GAWTC	2 cut(s)	189, 278
PleI	GAGTC	2 cut(s)	96, 344
PpsI	GAGTC	2 cut(s)	96, 344
PpuMI	RGGWCCY	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	364, 365
PspPI	GGNCC	2 cut(s)	93, 363
PspPPI	RGGWCCY	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	254, 293
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	93, 363
SchI	GAGTC	2 cut(s)	97, 345
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	6 cut(s)	45, 81, 166, 178, 204, 385
SfaNI	GCATC	1 cut(s)	61
SinI	GGWCC	2 cut(s)	93, 363
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	134, 289, 297
SspI	AATATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	182
TaiI	ACGT	1 cut(s)	166
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	3 cut(s)	134, 289, 297
TfiI	GAWTC	2 cut(s)	189, 278
Tru1I	TTAA	2 cut(s)	254, 293
Tru9I	TTAA	2 cut(s)	254, 293
TspDTI	ATGAA	3 cut(s)	53, 109, 143
TspGWI	ACGGA	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	93, 363
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	2 cut(s)	289, 297
XspI	CTAG	1 cut(s)	83
ZraI	GACGTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.