Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

55279347 .. 55286050

Gene Structure 6704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTTACAATTGCTTTAAAAGGGTCCGCTTCCTGCCCACTACTTCAAACTCTTCTGCCTTTTTCCATACCTCCTTTCAAAGTTGCTCATCTGCGTGTCTCCACCGGGGTCGTCGCAGCAATTGGAAGACCCTACAAGACTATCGACCTTGACATTATCATATCTAGAGTTCTGTTGGAACATTCAGCTCACACATCTCCTTGTTCATCAATTGTTCCATCATCAAGCGCAAGATGGTCGACCGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGACCAAGATTTATATAATATTGGAGTTCATTACAGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGACGTCTTAGCGAAAGTGAAGCCGGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTCATTCTCTTGGAAATTTAAGAATTTCAGATTTCGGTCTAAGTGCATTGCACGAACAAGGAGTCAGCCTCCTTCGCACAACTTATGGGACCCCTAACTATGTTGCACCCGAGGTCCTCGATCACAAGGGTTATGATGATGCCGGTCAAGGAAACAAAAGTCACCAGGCCACCAACAAAGAGAATCCCTTTTTCTTCCACTATCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

237

Amino Acids

26.08

Weight (kDa)

6.04

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 214	1.7e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	106 - 213	2.6e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	394
AccI	GTMKAC	2 cut(s)	239, 320
AciI	CCGC	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	517, 525
AcyI	GRCGYC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	2 cut(s)	47, 79
AjnI	CCWGG	1 cut(s)	666
AluBI	AGCT	3 cut(s)	188, 272, 430
AluI	AGCT	3 cut(s)	188, 272, 430
Alw26I	GTCTC	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	517, 525
ArsI	GACNNNNNNTTYG	2 cut(s)	549, 581
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	3 cut(s)	24, 591, 616
AsuC2I	CCSGG	2 cut(s)	106, 412
AsuHPI	GGTGA	2 cut(s)	371, 656
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	3 cut(s)	24, 591, 616
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	3 cut(s)	226, 228, 431
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BciT130I	CCWGG	1 cut(s)	668
BcnI	CCSGG	2 cut(s)	106, 412
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	2 cut(s)	165, 312
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	106, 412, 668
Bme18I	GGWCC	3 cut(s)	24, 591, 616
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	3 cut(s)	24, 591, 616
BmiI	GGNNCC	3 cut(s)	25, 592, 593
BmrFI	CCNGG	3 cut(s)	106, 412, 668
BmsI	GCATC	2 cut(s)	290, 631
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	555, 587
BpuMI	CCSGG	2 cut(s)	106, 412
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	105, 612
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	548
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	2 cut(s)	105, 612
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	1 cut(s)	548
BseXI	GCAGC	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	671
BsiEI	CGRYCG	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	4 cut(s)	105, 411, 488, 645
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	604
BsnI	GGCC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	611
Bsp143I	GATC	2 cut(s)	244, 622
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	671
BspLI	GGNNCC	3 cut(s)	25, 592, 593
BsrDI	GCAATG	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	644
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	105, 612
BssMI	GATC	2 cut(s)	244, 622
BssNI	GRCGYC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	668
Bst6I	CTCTTC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	391
BstDEI	CTNAG	2 cut(s)	395, 542
BstF5I	GGATG	1 cut(s)	281
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	247, 625
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	244, 622
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 576
BstNI	CCWGG	1 cut(s)	668
BstSCI	CCNGG	3 cut(s)	104, 410, 666
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	671
BtsCI	GGATG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	3 cut(s)	24, 591, 616
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	7 cut(s)	188, 272, 410, 430, 487, 570, 671
CviKI_1	RGCY	7 cut(s)	188, 272, 410, 430, 487, 570, 671
DdeI	CTNAG	2 cut(s)	395, 542
DpnI	GATC	2 cut(s)	246, 624
DpnII	GATC	2 cut(s)	244, 622
DraI	TTTAAA	2 cut(s)	18, 483
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	259
Eco47I	GGWCC	3 cut(s)	24, 591, 616
Eco88I	CYCGRG	1 cut(s)	611
EcoO109I	RGGNCCY	2 cut(s)	591, 616
EcoRII	CCWGG	1 cut(s)	666
EcoRV	GATATC	1 cut(s)	259
FaeI	CATG	1 cut(s)	389
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	1 cut(s)	385
FblI	GTMKAC	2 cut(s)	239, 320
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	165, 312
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	4 cut(s)	105, 411, 488, 645
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HincII	GTYRAC	2 cut(s)	240, 321
HindII	GTYRAC	2 cut(s)	240, 321
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	4 cut(s)	317, 417, 564, 685
HpaII	CCGG	4 cut(s)	105, 411, 488, 645
HphI	GGTGA	2 cut(s)	371, 656
Hpy166II	GTNNAC	3 cut(s)	6, 240, 321
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	3 cut(s)	165, 248, 707
Hpy8I	GTNNAC	3 cut(s)	6, 240, 321
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	584
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	4 cut(s)	302, 548, 553, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 576
HpyF3I	CTNAG	2 cut(s)	395, 542
HpySE526I	ACGT	1 cut(s)	391
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	1 cut(s)	228
KflI	GGGWCCC	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	244, 622
LpnPI	CCDG	8 cut(s)	46, 118, 339, 424, 501, 653, 658, 680
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	2 cut(s)	290, 631
MaeI	CTAG	2 cut(s)	165, 312
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	2 cut(s)	246, 624
MboI	GATC	2 cut(s)	244, 622
MboII	GAAGA	4 cut(s)	44, 138, 412, 688
MfeI	CAATTG	3 cut(s)	9, 120, 210
MluCI	AATT	6 cut(s)	9, 120, 210, 362, 517, 525
MlyI	GAGTC	2 cut(s)	326, 573
MmeI	TCCRAC	2 cut(s)	156, 448
MnlI	CCTC	7 cut(s)	81, 244, 271, 299, 581, 607, 629
MseI	TTAA	3 cut(s)	17, 482, 521
MslI	CAYNNNNRTG	2 cut(s)	93, 286
MspI	CCGG	4 cut(s)	105, 411, 488, 645
MspR9I	CCNGG	3 cut(s)	106, 412, 668
MunI	CAATTG	3 cut(s)	9, 120, 210
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	2 cut(s)	278, 576
NciI	CCSGG	2 cut(s)	106, 412
NdeII	GATC	2 cut(s)	244, 622
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	3 cut(s)	25, 592, 593
NmuCI	GTSAC	1 cut(s)	662
PfeI	GAWTC	2 cut(s)	417, 685
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	325, 572
PpsI	GAGTC	2 cut(s)	325, 572
PpuMI	RGGWCCY	2 cut(s)	591, 616
Psp5II	RGGWCCY	2 cut(s)	591, 616
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	3 cut(s)	25, 592, 593
PspPI	GGNCC	3 cut(s)	24, 591, 616
PspPPI	RGGWCCY	2 cut(s)	591, 616
RseI	CAYNNNNRTG	2 cut(s)	93, 286
SalI	GTCGAC	2 cut(s)	238, 319
SaqAI	TTAA	3 cut(s)	17, 482, 521
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	244, 622
Sau96I	GGNCC	3 cut(s)	24, 591, 616
SchI	GAGTC	2 cut(s)	326, 573
ScrFI	CCNGG	3 cut(s)	106, 412, 668
SetI	ASST	9 cut(s)	73, 150, 190, 274, 310, 358, 394, 432, 618
SfaNI	GCATC	2 cut(s)	290, 631
SinI	GGWCC	3 cut(s)	24, 591, 616
SmiMI	CAYNNNNRTG	2 cut(s)	93, 286
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	6 cut(s)	9, 120, 210, 362, 517, 525
SsiI	CCGC	1 cut(s)	27
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	2 cut(s)	165, 312
StyD4I	CCNGG	3 cut(s)	104, 410, 666
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	4 cut(s)	144, 239, 320, 621
TaqII	GACCGA	2 cut(s)	257, 527
TasI	AATT	6 cut(s)	9, 120, 210, 362, 517, 525
TfiI	GAWTC	2 cut(s)	417, 685
Tru1I	TTAA	3 cut(s)	17, 482, 521
Tru9I	TTAA	3 cut(s)	17, 482, 521
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	5 cut(s)	195, 282, 337, 371, 494
VpaK11BI	GGWCC	3 cut(s)	24, 591, 616
XapI	RAATTY	2 cut(s)	517, 525
XbaI	TCTAGA	1 cut(s)	164
XmiI	GTMKAC	2 cut(s)	239, 320
XspI	CTAG	2 cut(s)	165, 312
ZraI	GACGTC	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.