Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001755.1

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

240580 .. 243167

Gene Structure 2588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001755.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggaaaggacattatccatagaagctgaaatttttgagttcactccatcctttcatcttgtggagatgaagaaatctaacggagatacattcgagtttaggaagatggtagaagaggatataaggccggctctcaaagacgtcatatgggcatggcagggtgggaaaagaatgagcacgctggaaaggactaatgccccagacacctctgctttgtgcaagtggtattggtcttcccagttggaaagctggaggaggacagttgacttctgccacaggagaggtgtttaccaccacgatttgaagcccgaaaacttgctgctagatgaaaatggagtgttgaaggtatcggattttgggttaagtgcgcttgctgaatcgaagagggaagatggtttactacatacaagttgtggcacaccttcttatgtagctcctgaagtgttgggcaggaaagcctatgatggagccaaagccgatatatggtcttgtggggtgatcttgtttgcactattggccgtgaggagcctcctgtctgggatcctcaaccctgatccagataaaaggattcttatttcagagataatggaaacttgctggtttagaaaaggctccaaatccgttacgaccataccagaagtggaagacccgggtttgttgggcgctgatgcagggtttgatgatcgtgacaacagtgagaaacaacagcttgctagaccaaccctctttgaacgcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

246

Amino Acids

27.92

Weight (kDa)

5.38

Isoelectric Point (pI)

41.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
AclWI	GGATC	3 cut(s)	535, 548, 548
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	483
AgsI	TTSAA	3 cut(s)	304, 343, 731
AluBI	AGCT	4 cut(s)	26, 249, 434, 709
AluI	AGCT	4 cut(s)	26, 249, 434, 709
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	3 cut(s)	535, 548, 548
Ama87I	CYCGRG	1 cut(s)	649
AoxI	GGCC	2 cut(s)	125, 516
ApeKI	GCWGC	1 cut(s)	319
ApoI	RAATTY	1 cut(s)	30
AspLEI	GCGC	2 cut(s)	370, 665
AsuC2I	CCSGG	2 cut(s)	650, 651
AsuHPI	GGTGA	1 cut(s)	508
AvaI	CYCGRG	1 cut(s)	649
BamHI	GGATCC	1 cut(s)	540
BarI	GAAGNNNNNNTAC	2 cut(s)	381, 413
BbsI	GAAGAC	2 cut(s)	225, 651
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	4 cut(s)	55, 100, 386, 458
BceAI	ACGGC	1 cut(s)	503
BcnI	CCSGG	2 cut(s)	650, 651
BfaI	CTAG	2 cut(s)	323, 714
BfoI	RGCGCY	1 cut(s)	666
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	2 cut(s)	650, 651
BmeT110I	CYCGRG	1 cut(s)	649
BmiI	GGNNCC	4 cut(s)	469, 527, 542, 613
BmrFI	CCNGG	2 cut(s)	650, 651
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	658
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	2 cut(s)	225, 651
BpmI	CTGGAG	1 cut(s)	271
BpuMI	CCSGG	2 cut(s)	650, 651
BsaHI	GRCGYC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	649
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	649
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	2 cut(s)	268, 538
BseXI	GCAGC	1 cut(s)	306
BshFI	GGCC	2 cut(s)	127, 518
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	649
BsiSI	CCGG	2 cut(s)	128, 650
BslI	CCNNNNNNNGG	1 cut(s)	483
BsnI	GGCC	2 cut(s)	127, 518
BsoBI	CYCGRG	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	4 cut(s)	498, 540, 553, 682
BspANI	GGCC	2 cut(s)	127, 518
BspLI	GGNNCC	4 cut(s)	469, 527, 542, 613
BspPI	GGATC	3 cut(s)	535, 548, 548
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	649
BssMI	GATC	4 cut(s)	498, 540, 553, 682
BssNI	GRCGYC	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	262, 695
Bst6I	CTCTTC	2 cut(s)	108, 377
BstACI	GRCGYC	1 cut(s)	141
BstC8I	GCNNGC	4 cut(s)	129, 179, 372, 711
BstF5I	GGATG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	666
BstHHI	GCGC	2 cut(s)	370, 665
BstKTI	GATC	4 cut(s)	501, 543, 556, 685
BstMBI	GATC	4 cut(s)	498, 540, 553, 682
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstSCI	CCNGG	2 cut(s)	648, 649
BstV1I	GCAGC	1 cut(s)	306
BstV2I	GAAGAC	2 cut(s)	225, 651
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	127, 518
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	700
Cac8I	GCNNGC	4 cut(s)	129, 179, 372, 711
CfoI	GCGC	2 cut(s)	370, 665
Cfr10I	RCCGGY	1 cut(s)	127
Cfr9I	CCCGGG	1 cut(s)	649
CviAII	CATG	1 cut(s)	153
DpnI	GATC	4 cut(s)	500, 542, 555, 684
DpnII	GATC	4 cut(s)	498, 540, 553, 682
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	2 cut(s)	108, 377
EarI	CTCTTC	2 cut(s)	108, 377
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	649
FaeI	CATG	1 cut(s)	156
FatI	CATG	1 cut(s)	152
FauNDI	CATATG	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	2 cut(s)	323, 714
GlaI	GCGC	2 cut(s)	369, 664
GluI	GCNGC	1 cut(s)	320
GsuI	CTGGAG	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	666
HaeIII	GGCC	2 cut(s)	127, 518
HapII	CCGG	2 cut(s)	128, 650
HhaI	GCGC	2 cut(s)	370, 665
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	156
Hin6I	GCGC	2 cut(s)	368, 663
HinP1I	GCGC	2 cut(s)	368, 663
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	2 cut(s)	377, 568
HpaII	CCGG	2 cut(s)	128, 650
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	4 cut(s)	42, 265, 289, 398
Hpy188I	TCNGA	2 cut(s)	352, 580
Hpy188III	TCNNGA	3 cut(s)	437, 557, 686
Hpy8I	GTNNAC	4 cut(s)	42, 265, 289, 398
HpyAV	CCTTC	2 cut(s)	337, 432
HpyCH4III	ACNGT	2 cut(s)	262, 695
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	3 cut(s)	219, 509, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpySE526I	ACGT	1 cut(s)	141
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	156
HspAI	GCGC	2 cut(s)	368, 663
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	498, 540, 553, 682
LmnI	GCTCC	4 cut(s)	439, 467, 525, 617
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	1 cut(s)	658
MaeI	CTAG	2 cut(s)	323, 714
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	622, 686
MalI	GATC	4 cut(s)	500, 542, 555, 684
MboI	GATC	4 cut(s)	498, 540, 553, 682
MboII	GAAGA	7 cut(s)	82, 115, 125, 225, 394, 401, 656
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	222
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	1 cut(s)	362
MspI	CCGG	2 cut(s)	128, 650
MspR9I	CCNGG	2 cut(s)	650, 651
MwoI	GCNNNNNNNGC	1 cut(s)	515
NaeI	GCCGGC	1 cut(s)	129
NciI	CCSGG	2 cut(s)	650, 651
NdeI	CATATG	1 cut(s)	146
NdeII	GATC	4 cut(s)	498, 540, 553, 682
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	4 cut(s)	469, 527, 542, 613
NmuCI	GTSAC	1 cut(s)	686
PdiI	GCCGGC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	377, 568
PkrI	GCNGC	1 cut(s)	321
PspN4I	GGNNCC	4 cut(s)	469, 527, 542, 613
PsuI	RGATCY	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	4 cut(s)	498, 540, 553, 682
ScrFI	CCNGG	2 cut(s)	650, 651
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	9 cut(s)	28, 144, 209, 251, 286, 348, 424, 436, 711
SfaNI	GCATC	1 cut(s)	658
SmaI	CCCGGG	1 cut(s)	651
Sse9I	AATT	1 cut(s)	30
SspMI	CTAG	2 cut(s)	323, 714
StyD4I	CCNGG	2 cut(s)	648, 649
TaaI	ACNGT	2 cut(s)	262, 695
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	2 cut(s)	93, 380
TasI	AATT	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	377, 568
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	700
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	3 cut(s)	44, 83, 342
TspGWI	ACGGA	2 cut(s)	96, 610
TspMI	CCCGGG	1 cut(s)	649
TspRI	CASTG	1 cut(s)	700
XapI	RAATTY	1 cut(s)	30
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XmaI	CCCGGG	1 cut(s)	649
XspI	CTAG	2 cut(s)	323, 714
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.