Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Forward (+)

541341 .. 543200

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1008400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGAGGAGCTTCGCTGCCCAAGCCTGAGCTTTCAGTACGTGCTAAACGCTGCATCGGCGGCAGGAATTGTCACCGGAAACACGTAGAGGACGGCGACTCGATGGTGAGGCTGCAGGGGCAGGAGAGCGGGAGGAAGGGGAAGCTGGCGATAGCGGCGGAGATATTCGCCGTGACGCCGTCGTTTTTGGTGGTGGAGGTGAAGAAGGACAATGGTGATACGTTGGAGTACAACCAGTTCTGCAGCAAGGAGCTGCGGCCGGCGCTCAAGGACATCGTATGGACATCCCCCGTCGAGAATTCGACGGCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010540 GO:0010817 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0035556 GO:0036211 GO:0042221 GO:0042538 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

105

Amino Acids

11.44

Weight (kDa)

9.15

Isoelectric Point (pI)

33.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	129
AciI	CCGC	6 cut(s)	60, 129, 155, 158, 256, 308
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	39, 230
AflIII	ACRYGT	1 cut(s)	82
AluBI	AGCT	4 cut(s)	11, 31, 145, 253
AluI	AGCT	4 cut(s)	11, 31, 145, 253
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	5 cut(s)	16, 51, 112, 243, 253
ApoI	RAATTY	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	4 cut(s)	65, 118, 211, 227
BbvI	GCAGC	5 cut(s)	3, 38, 99, 240, 255
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	3 cut(s)	109, 155, 163
BfmI	CTRYAG	2 cut(s)	113, 241
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	9 cut(s)	17, 52, 61, 113, 156, 244, 254, 257, 309
BlsI	GCNGC	9 cut(s)	18, 53, 62, 114, 157, 245, 255, 258, 310
BmsI	GCATC	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	251
BsaAI	YACGTR	2 cut(s)	41, 85
BsaHI	GRCGYC	1 cut(s)	176
BsaWI	WCCGGW	1 cut(s)	75
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	284
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	21
BseX3I	CGGCCG	1 cut(s)	257
BseXI	GCAGC	5 cut(s)	3, 38, 99, 240, 255
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	259
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	76, 260
BsnI	GGCC	1 cut(s)	259
BspACI	CCGC	6 cut(s)	60, 129, 155, 158, 256, 308
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	19
BspMAI	CTGCAG	2 cut(s)	117, 245
BsrBI	CCGCTC	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	176
BstBAI	YACGTR	2 cut(s)	41, 85
BstC8I	GCNNGC	2 cut(s)	147, 261
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	265
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 57, 60, 118, 155, 262
BstSFI	CTRYAG	2 cut(s)	113, 241
BstV1I	GCAGC	5 cut(s)	3, 38, 99, 240, 255
BstZI	CGGCCG	1 cut(s)	257
BsuRI	GGCC	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	147, 261
CfoI	GCGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	259
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	38, 229
CviJI	RGCY	8 cut(s)	11, 25, 31, 112, 145, 253, 259, 311
CviKI_1	RGCY	8 cut(s)	11, 25, 31, 112, 145, 253, 259, 311
CviQI	GTAC	2 cut(s)	38, 229
DdeI	CTNAG	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	257
EagI	CGGCCG	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	257
Eco52I	CGGCCG	1 cut(s)	257
EcoRI	GAATTC	1 cut(s)	298
FaiI	YATR	1 cut(s)	280
FauI	CCCGC	1 cut(s)	122
Fnu4HI	GCNGC	9 cut(s)	17, 52, 61, 113, 156, 244, 254, 257, 309
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	9 cut(s)	17, 52, 61, 113, 156, 244, 254, 257, 309
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	9 cut(s)	17, 52, 61, 113, 156, 244, 254, 257, 309
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	2 cut(s)	76, 260
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	265
Hin1I	GRCGYC	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	2 cut(s)	76, 260
HphI	GGTGA	4 cut(s)	65, 118, 211, 227
Hpy188III	TCNNGA	1 cut(s)	295
Hpy99I	CGWCG	3 cut(s)	184, 296, 307
HpyAV	CCTTC	2 cut(s)	130, 199
HpyCH4IV	ACGT	3 cut(s)	40, 84, 221
HpyCH4V	TGCA	3 cut(s)	54, 115, 243
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 57, 60, 118, 155, 262
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	3 cut(s)	40, 84, 221
Hsp92I	GRCGYC	1 cut(s)	176
HspAI	GCGC	1 cut(s)	263
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	8, 250
LpnPI	CCDG	8 cut(s)	39, 49, 89, 101, 107, 131, 248, 273
Lsp1109I	GCAGC	5 cut(s)	3, 38, 99, 240, 255
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	3 cut(s)	40, 84, 221
MaeIII	GTNAC	2 cut(s)	71, 172
MbiI	CCGCTC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	214
MluCI	AATT	2 cut(s)	67, 298
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	82, 102, 126, 190
MroNI	GCCGGC	1 cut(s)	259
MspI	CCGG	2 cut(s)	76, 260
MwoI	GCNNNNNNNGC	6 cut(s)	22, 57, 60, 118, 155, 262
NaeI	GCCGGC	1 cut(s)	261
NgoMIV	GCCGGC	1 cut(s)	259
NmuCI	GTSAC	2 cut(s)	71, 172
PdiI	GCCGGC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	178
PkrI	GCNGC	9 cut(s)	18, 53, 62, 114, 157, 245, 255, 258, 310
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Ppu21I	YACGTR	2 cut(s)	41, 85
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PstI	CTGCAG	2 cut(s)	117, 245
PsyI	GACNNNGTC	1 cut(s)	178
RsaI	GTAC	2 cut(s)	39, 230
RsaNI	GTAC	2 cut(s)	38, 229
SatI	GCNGC	9 cut(s)	17, 52, 61, 113, 156, 244, 254, 257, 309
SchI	GAGTC	1 cut(s)	92
SetI	ASST	8 cut(s)	13, 33, 43, 87, 147, 201, 224, 255
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	2 cut(s)	113, 241
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	67, 298
SsiI	CCGC	6 cut(s)	60, 129, 155, 158, 256, 308
TaiI	ACGT	3 cut(s)	43, 87, 224
TaqI	TCGA	3 cut(s)	101, 294, 302
TasI	AATT	2 cut(s)	67, 298
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	4 cut(s)	63, 158, 259, 311
TseFI	GTSAC	2 cut(s)	71, 172
TseI	GCWGC	5 cut(s)	16, 51, 112, 243, 253
Tsp45I	GTSAC	2 cut(s)	71, 172
Tth111I	GACNNNGTC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.