Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003033.1

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

76328 .. 77343

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003033.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgccaggacgcaatgcagctgccgcagacgaaaacccagaagcatcagaacttccgacctgcgccattaagatcatcgacaaagagaagatcctcaagtgcggtttgatcgcccacatcaaacgcgagatctccatcttccgccgcatcctccaccccaatatcatccaactcttcgaagtaatcgccaccaatgccaagatctacttcatcatggagtatgtccgcggcggcgagctcttcaacaaggtcaccaagggccagctcaaagagaaggctgctagaaagtacttccagcaattaatcttagccgtcggattctgccatccccgaggagtctaccaccgcgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

117

Amino Acids

13.35

Weight (kDa)

9.51

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	339
AccII	CGCG	3 cut(s)	126, 228, 348
AciI	CCGC	8 cut(s)	24, 102, 142, 145, 226, 228, 231, 346
AclWI	GGATC	1 cut(s)	85
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	4
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	3 cut(s)	20, 238, 265
AluI	AGCT	3 cut(s)	20, 238, 265
Alw21I	GWGCWC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	3 cut(s)	17, 20, 278
AseI	ATTAAT	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	7, 29, 265
BccI	CCATC	2 cut(s)	143, 333
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	68
BglII	AGATCT	2 cut(s)	129, 201
BisI	GCNGC	7 cut(s)	18, 21, 24, 145, 229, 232, 279
BlsI	GCNGC	7 cut(s)	19, 22, 25, 146, 230, 233, 280
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	6
BmsI	GCATC	2 cut(s)	53, 156
Bpu14I	TTCGAA	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	226, 255, 331
Bse3DI	GCAATG	1 cut(s)	19
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	6
BseDI	CCNNGG	3 cut(s)	226, 255, 331
BseGI	GGATG	3 cut(s)	147, 165, 325
BseJI	GATNNNNATC	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	7, 29, 265
Bsh1236I	CGCG	3 cut(s)	126, 228, 348
BshFI	GGCC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	330
BsnI	GGCC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	330
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	5 cut(s)	72, 90, 108, 129, 201
BspACI	CCGC	8 cut(s)	24, 102, 142, 145, 226, 228, 231, 346
BspANI	GGCC	1 cut(s)	261
BspFNI	CGCG	3 cut(s)	126, 228, 348
BspMI	ACCTGC	1 cut(s)	68
BspPI	GGATC	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	245
BspT104I	TTCGAA	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	226, 255, 331
BssMI	GATC	5 cut(s)	72, 90, 108, 129, 201
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	6
Bst6I	CTCTTC	2 cut(s)	179, 245
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	236, 263
BstDEI	CTNAG	1 cut(s)	307
BstDSI	CCRYGG	1 cut(s)	226
BstEII	GGTNACC	1 cut(s)	250
BstF5I	GGATG	3 cut(s)	147, 165, 325
BstFNI	CGCG	3 cut(s)	126, 228, 348
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	5 cut(s)	75, 93, 111, 132, 204
BstMBI	GATC	5 cut(s)	72, 90, 108, 129, 201
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 194
BstNI	CCWGG	1 cut(s)	6
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	4
BstUI	CGCG	3 cut(s)	126, 228, 348
BstV1I	GCAGC	3 cut(s)	7, 29, 265
BstX2I	RGATCY	3 cut(s)	90, 129, 201
BstYI	RGATCY	3 cut(s)	90, 129, 201
BsuRI	GGCC	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	147, 165, 325
BveI	ACCTGC	1 cut(s)	68
Cac8I	GCNNGC	2 cut(s)	236, 263
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	259
Cfr42I	CCGCGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	6 cut(s)	20, 238, 261, 265, 278, 311
CviKI_1	RGCY	6 cut(s)	20, 238, 261, 265, 278, 311
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	307
DpnI	GATC	5 cut(s)	74, 92, 110, 131, 203
DpnII	GATC	5 cut(s)	72, 90, 108, 129, 201
Eam1104I	CTCTTC	2 cut(s)	179, 245
EarI	CTCTTC	2 cut(s)	179, 245
EciI	GGCGGA	1 cut(s)	131
Ecl136II	GAGCTC	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	238
EcoO65I	GGTNACC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	1 cut(s)	217
FaiI	YATR	2 cut(s)	215, 222
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FatI	CATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	7 cut(s)	18, 21, 24, 145, 229, 232, 279
FokI	GGATG	3 cut(s)	134, 152, 312
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	7 cut(s)	18, 21, 24, 145, 229, 232, 279
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	7 cut(s)	18, 21, 24, 145, 229, 232, 279
HaeIII	GGCC	1 cut(s)	261
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	1 cut(s)	217
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HinfI	GANTC	2 cut(s)	318, 336
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	3 cut(s)	49, 57, 317
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 194
HpyF3I	CTNAG	1 cut(s)	307
Hsp92II	CATG	1 cut(s)	217
HspAI	GCGC	1 cut(s)	63
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	72, 90, 108, 129, 201
LguI	GCTCTTC	1 cut(s)	245
LpnPI	CCDG	5 cut(s)	18, 51, 73, 275, 308
Lsp1109I	GCAGC	3 cut(s)	7, 29, 265
LweI	GCATC	2 cut(s)	53, 156
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	5 cut(s)	74, 92, 110, 131, 203
MboI	GATC	5 cut(s)	72, 90, 108, 129, 201
MboII	GAAGA	4 cut(s)	100, 130, 166, 232
MflI	RGATCY	3 cut(s)	90, 129, 201
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	3 cut(s)	80, 193, 295
MnlI	CCTC	3 cut(s)	104, 161, 326
MseI	TTAA	2 cut(s)	69, 302
MspA1I	CMGCKG	2 cut(s)	20, 228
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
MvnI	CGCG	3 cut(s)	126, 228, 348
MwoI	GCNNNNNNNGC	2 cut(s)	23, 194
NdeII	GATC	5 cut(s)	72, 90, 108, 129, 201
NlaIII	CATG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	7 cut(s)	19, 22, 25, 146, 230, 233, 280
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
PshBI	ATTAAT	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	4
PspEI	GGTNACC	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	4
PspPI	GGNCC	1 cut(s)	259
PsuI	RGATCY	3 cut(s)	90, 129, 201
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	240
SacII	CCGCGG	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	2 cut(s)	69, 302
SatI	GCNGC	7 cut(s)	18, 21, 24, 145, 229, 232, 279
Sau3AI	GATC	5 cut(s)	72, 90, 108, 129, 201
Sau96I	GGNCC	1 cut(s)	259
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	5 cut(s)	22, 62, 240, 252, 267
SfaNI	GCATC	2 cut(s)	53, 156
Sfr303I	CCGCGG	1 cut(s)	229
SfuI	TTCGAA	1 cut(s)	177
SgrBI	CCGCGG	1 cut(s)	229
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	299
SsiI	CCGC	8 cut(s)	24, 102, 142, 145, 226, 228, 231, 346
SspMI	CTAG	1 cut(s)	282
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	255
TaqI	TCGA	2 cut(s)	78, 177
TasI	AATT	1 cut(s)	299
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	4 cut(s)	26, 147, 231, 234
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	69, 302
Tru9I	TTAA	2 cut(s)	69, 302
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	17, 20, 278
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	199
VspI	ATTAAT	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.