Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

6423034 .. 6424929

Gene Structure 1896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTCTTTGCTTCTTCGCTCCAGAGAGCTCAGAGTTTCACAACTGCTGTGTTACCTGCATCCGAGGACTCTTGGCAACATCAACTCCTCCAGTGCAAGTGATTTGTGGGGATTTACAATTGTCATATTGGTTTTGTCATCAAGGAGGAGAAGGAAGGCGATTTTTGGATTTGTGTTGAGGAAAGCAGGAGAACTGCAGAAGCATCAGAGCTTCCGACTCGCGCTATTAAGATCATCGACAAAGAGAAGATCCTCAAGGGCGGTTGGATCACCCACATCAAATGCGAGATCTCCATCTTCCGCCGCGTCCGTCACCTCAATATCGTCCAGCTCTTCGATCGCCACCAAGGCCAAGATCTACTTTGTCATGAAGTACATCCGCGGCGGCGAGCTCTTCAACAAGGTCGCCAAGGGCCGCCTCAAAGAAGAGGTTGCTAGAAAGTACTTCCAGCAATTAATCTCGACCATCGGATTCTGCCATGGCCGAGGAGTCTACCACCGCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

169

Amino Acids

18.82

Weight (kDa)

11.57

Isoelectric Point (pI)

74.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	110 - 168	3.3e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	4 cut(s)	221, 305, 381, 501
AciI	CCGC	8 cut(s)	260, 300, 303, 379, 381, 384, 415, 499
AclWI	GGATC	2 cut(s)	243, 274
AcoI	YGGCCR	1 cut(s)	481
AfaI	GTAC	2 cut(s)	374, 443
AgsI	TTSAA	1 cut(s)	397
AluBI	AGCT	4 cut(s)	28, 210, 330, 391
AluI	AGCT	4 cut(s)	28, 210, 330, 391
Alw21I	GWGCWC	2 cut(s)	30, 393
AlwI	GGATC	2 cut(s)	243, 274
AoxI	GGCC	3 cut(s)	348, 412, 481
AseI	ATTAAT	1 cut(s)	455
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	2 cut(s)	261, 304
BanII	GRGCYC	2 cut(s)	30, 393
Bbv12I	GWGCWC	2 cut(s)	30, 393
BccI	CCATC	2 cut(s)	301, 473
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	63
BglI	GCCNNNNNGGC	1 cut(s)	347
BglII	AGATCT	2 cut(s)	287, 354
BisI	GCNGC	4 cut(s)	303, 382, 385, 415
BlsI	GCNGC	4 cut(s)	304, 383, 386, 416
BmcAI	AGTACT	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	412
BmsI	GCATC	2 cut(s)	67, 211
BpmI	CTGGAG	2 cut(s)	4, 73
BpuEI	CTTGAG	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	292
BsaJI	CCNNGG	6 cut(s)	62, 345, 379, 408, 478, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bse1I	ACTGG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	292
BseDI	CCNNGG	6 cut(s)	62, 345, 379, 408, 478, 484
BseGI	GGATG	2 cut(s)	58, 375
BseJI	GATNNNNATC	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	90
BseRI	GAGGAG	3 cut(s)	76, 160, 501
Bsh1236I	CGCG	4 cut(s)	221, 305, 381, 501
Bsh1285I	CGRYCG	1 cut(s)	339
BshFI	GGCC	3 cut(s)	350, 414, 483
BsiEI	CGRYCG	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	30, 393
BsnI	GGCC	3 cut(s)	350, 414, 483
Bsp1286I	GDGCHC	2 cut(s)	30, 393
Bsp143I	GATC	6 cut(s)	230, 248, 266, 287, 336, 354
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	8 cut(s)	260, 300, 303, 379, 381, 384, 415, 499
BspANI	GGCC	3 cut(s)	350, 414, 483
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	4 cut(s)	221, 305, 381, 501
BspHI	TCATGA	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	2 cut(s)	243, 274
BspQI	GCTCTTC	2 cut(s)	337, 398
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	6 cut(s)	62, 345, 379, 408, 478, 484
BssMI	GATC	6 cut(s)	230, 248, 266, 287, 336, 354
BssT1I	CCWWGG	3 cut(s)	345, 408, 478
Bst6I	CTCTTC	3 cut(s)	337, 398, 420
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	1 cut(s)	29
BstDSI	CCRYGG	2 cut(s)	379, 478
BstF5I	GGATG	2 cut(s)	58, 375
BstFNI	CGCG	4 cut(s)	221, 305, 381, 501
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	6 cut(s)	233, 251, 269, 290, 339, 357
BstMBI	GATC	6 cut(s)	230, 248, 266, 287, 336, 354
BstMCI	CGRYCG	1 cut(s)	339
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	194
BstUI	CGCG	4 cut(s)	221, 305, 381, 501
BstX2I	RGATCY	3 cut(s)	248, 287, 354
BstYI	RGATCY	3 cut(s)	248, 287, 354
BsuRI	GGCC	3 cut(s)	350, 414, 483
BtgI	CCRYGG	2 cut(s)	379, 478
BtsCI	GGATG	2 cut(s)	58, 375
BtsIMutI	CAGTG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	412
Cfr42I	CCGCGG	1 cut(s)	382
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	373, 442
CviAII	CATG	2 cut(s)	367, 479
CviJI	RGCY	7 cut(s)	28, 210, 330, 350, 391, 414, 483
CviKI_1	RGCY	7 cut(s)	28, 210, 330, 350, 391, 414, 483
CviQI	GTAC	2 cut(s)	373, 442
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	6 cut(s)	232, 250, 268, 289, 338, 356
DpnII	GATC	6 cut(s)	230, 248, 266, 287, 336, 354
EaeI	YGGCCR	1 cut(s)	481
Eam1104I	CTCTTC	3 cut(s)	337, 398, 420
EarI	CTCTTC	3 cut(s)	337, 398, 420
EciI	GGCGGA	1 cut(s)	289
Ecl136II	GAGCTC	2 cut(s)	28, 391
Eco130I	CCWWGG	3 cut(s)	345, 408, 478
Eco24I	GRGCYC	2 cut(s)	30, 393
Eco53kI	GAGCTC	2 cut(s)	28, 391
EcoICRI	GAGCTC	2 cut(s)	28, 391
EcoT14I	CCWWGG	3 cut(s)	345, 408, 478
EcoT38I	GRGCYC	2 cut(s)	30, 393
ErhI	CCWWGG	3 cut(s)	345, 408, 478
FaeI	CATG	2 cut(s)	370, 482
FaiI	YATR	3 cut(s)	125, 368, 480
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	2 cut(s)	366, 478
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	4 cut(s)	303, 382, 385, 415
FokI	GGATG	2 cut(s)	45, 362
FriOI	GRGCYC	2 cut(s)	30, 393
Fsp4HI	GCNGC	4 cut(s)	303, 382, 385, 415
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	4 cut(s)	303, 382, 385, 415
GsuI	CTGGAG	2 cut(s)	4, 73
HaeIII	GGCC	3 cut(s)	350, 414, 483
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	370, 482
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	4 cut(s)	67, 216, 471, 489
HphI	GGTGA	2 cut(s)	261, 304
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	5 cut(s)	32, 63, 207, 215, 470
Hpy188III	TCNNGA	3 cut(s)	21, 367, 460
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	144, 148
HpyCH4V	TGCA	3 cut(s)	58, 95, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	370, 482
HspAI	GCGC	1 cut(s)	221
KspI	CCGCGG	1 cut(s)	382
Kzo9I	GATC	6 cut(s)	230, 248, 266, 287, 336, 354
LguI	GCTCTTC	2 cut(s)	337, 398
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	34, 68, 103, 171, 340, 461
LweI	GCATC	2 cut(s)	67, 211
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	50, 310
MalI	GATC	6 cut(s)	232, 250, 268, 289, 338, 356
MboI	GATC	6 cut(s)	230, 248, 266, 287, 336, 354
MboII	GAAGA	6 cut(s)	5, 258, 288, 324, 385, 437
MfeI	CAATTG	1 cut(s)	117
MflI	RGATCY	3 cut(s)	248, 287, 354
MhlI	GDGCHC	2 cut(s)	30, 393
MluCI	AATT	2 cut(s)	117, 452
MlyI	GAGTC	3 cut(s)	61, 210, 498
MmeI	TCCRAC	2 cut(s)	238, 244
MnlI	CCTC	9 cut(s)	57, 97, 138, 171, 262, 325, 421, 428, 479
MseI	TTAA	2 cut(s)	227, 455
MspA1I	CMGCKG	1 cut(s)	381
MunI	CAATTG	1 cut(s)	117
MvnI	CGCG	4 cut(s)	221, 305, 381, 501
MwoI	GCNNNNNNNGC	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	6 cut(s)	230, 248, 266, 287, 336, 354
NlaIII	CATG	2 cut(s)	370, 482
NmuCI	GTSAC	1 cut(s)	310
PagI	TCATGA	1 cut(s)	366
PciSI	GCTCTTC	2 cut(s)	337, 398
PfeI	GAWTC	1 cut(s)	471
PkrI	GCNGC	4 cut(s)	304, 383, 386, 416
Ple19I	CGATCG	1 cut(s)	339
PleI	GAGTC	3 cut(s)	61, 210, 497
PpsI	GAGTC	3 cut(s)	61, 210, 497
PshBI	ATTAAT	1 cut(s)	455
Psp124BI	GAGCTC	2 cut(s)	30, 393
PspPI	GGNCC	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	198
PsuI	RGATCY	3 cut(s)	248, 287, 354
PvuI	CGATCG	1 cut(s)	339
RsaI	GTAC	2 cut(s)	374, 443
RsaNI	GTAC	2 cut(s)	373, 442
SacI	GAGCTC	2 cut(s)	30, 393
SacII	CCGCGG	1 cut(s)	382
SapI	GCTCTTC	2 cut(s)	337, 398
SaqAI	TTAA	2 cut(s)	227, 455
SatI	GCNGC	4 cut(s)	303, 382, 385, 415
Sau3AI	GATC	6 cut(s)	230, 248, 266, 287, 336, 354
Sau96I	GGNCC	1 cut(s)	412
ScaI	AGTACT	1 cut(s)	443
SchI	GAGTC	3 cut(s)	61, 210, 498
SduI	GDGCHC	2 cut(s)	30, 393
SetI	ASST	8 cut(s)	30, 57, 212, 317, 332, 393, 405, 432
SfaNI	GCATC	2 cut(s)	67, 211
SfcI	CTRYAG	1 cut(s)	194
Sfr303I	CCGCGG	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	2 cut(s)	117, 452
SsiI	CCGC	8 cut(s)	260, 300, 303, 379, 381, 384, 415, 499
SspMI	CTAG	1 cut(s)	435
SstI	GAGCTC	2 cut(s)	30, 393
StyI	CCWWGG	3 cut(s)	345, 408, 478
TaqI	TCGA	3 cut(s)	236, 335, 461
TasI	AATT	2 cut(s)	117, 452
TatI	WGTACW	2 cut(s)	372, 441
TauI	GCSGC	4 cut(s)	305, 384, 387, 417
TfiI	GAWTC	1 cut(s)	471
Tru1I	TTAA	2 cut(s)	227, 455
Tru9I	TTAA	2 cut(s)	227, 455
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	1 cut(s)	383
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	492
XspI	CTAG	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.