Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

6727509 .. 6730740

Gene Structure 3232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAATCCTCAACCCTAATCCGGATCAAAGGTATCTTGCTTCGGCAATTATGCGAGAACCAAGAGATTATTACACCCACCACTTTGACTGCTTTCGATTTCATATCTCTTGCAAGTGGACTTGATTTATCTGGCTTGATGATGCAAAAGGATTCAAAGAAAGCAGTGCTCTTCACATCAGCGCAATCTGCCACATCCATCATGTCGAAGCTGAGGGAGATTACTCGGAAACTGAAGCTGAAAGTGAAGAAAGAAGGAGCATCACTGAAGTCGGTGAAATCCATGGATGGAAGGACATTATCCATAGAAGCTGAAATTTTTGAGTTCACTCCATCCTTTCATCTAGTGGAGATGAAGAAATCTAACGGAGATACATTCGAGTTTAGGAAGATGGTAGAAGAGGATATAAGGCCGGCTCTCAAAGACGTCGTATGGGCATGGCAGGGTCAAGGAACCTTTGCAAAGGTTTATAGAGCAAGGAACCTAGAAACTACTAAGAGTGTGGCTATTAAAGTAATCGCCAGAGACAAGGTTGTAAAAGATGGATTGGTTAATCAAACCAAAAGAGATATAACTATCATGAGAATGCTTAAACACCCAAACAAAGTGCATCTATATGATGTCATAGCCTCCAGAGACAAGATCTACCTTGTCATGGAATACGCGGAAGGCGGTGAGATTTTTCACAAAATAGTAAAAGGAAAGCTGGAGGAGGAAGTAGCCAGGAACTACTTCCAACAGTTGATCACGACAGTATCGGATTTTGGGTTAAGTGCGCTTGCTGAATCGAAGAGGGAAGATGGTTTACTACATACAAGTTGTGGCACACCTTCTTATGTAGCTCCTGAAGTAAAAATATGCGCAGCAGATTATAAATGCCCGAGGTGGTTTCCAGATGAAGTGACGAGCCTCCTGTCTGGGATCCTCAACCCTGATCCAGATAAAAGGATTCTTATTTCAGAGATAATGGAAACTTGCTGGTTTAGAAAAGGCTCCAAATCCGTTACGACCATACCAGAAGTGGAAGACCCGGGTTGGTTGGGTGCTGATGCAGGGTTTGATGATCGTGACAACAGTGAGAAACAACAGCTTGCTAGACCAACGCTCTTTGAACGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04068 ko04113 ko04138 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04113 map04138 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

373

Amino Acids

42.16

Weight (kDa)

8.6

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAF	PF03822	26 - 84	2.2e-16	NAF domain
Pkinase	PF00069	149 - 252	3.4e-21	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	149 - 233	6.9e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AatII	GACGTC	1 cut(s)	429
Acc16I	TGCGCA	1 cut(s)	862
AccII	CGCG	1 cut(s)	665
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	2 cut(s)	665, 672
AclWI	GGATC	4 cut(s)	32, 916, 929, 929
AcsI	RAATTY	1 cut(s)	315
AcuI	CTGAAG	3 cut(s)	254, 287, 867
AcyI	GRCGYC	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	21, 655
AgsI	TTSAA	2 cut(s)	156, 1112
AjnI	CCWGG	1 cut(s)	722
AluBI	AGCT	6 cut(s)	211, 238, 311, 706, 842, 1090
AluI	AGCT	6 cut(s)	211, 238, 311, 706, 842, 1090
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	2 cut(s)	519, 630
AlwI	GGATC	4 cut(s)	32, 916, 929, 929
Ama87I	CYCGRG	2 cut(s)	880, 1030
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	863
ApoI	RAATTY	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	3 cut(s)	184, 778, 863
AsuC2I	CCSGG	2 cut(s)	1031, 1032
AsuHPI	GGTGA	2 cut(s)	286, 686
AvaI	CYCGRG	2 cut(s)	880, 1030
BaeI	ACNNNNGTAYC	2 cut(s)	738, 771
BamHI	GGATCC	1 cut(s)	921
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	1 cut(s)	1032
Bbv12I	GWGCWC	1 cut(s)	171
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	875
BccI	CCATC	6 cut(s)	206, 281, 340, 385, 536, 794
BciT130I	CCWGG	1 cut(s)	724
BclI	TGATCA	1 cut(s)	744
BcnI	CCSGG	2 cut(s)	1031, 1032
BcoDI	GTCTC	2 cut(s)	519, 630
BfaI	CTAG	3 cut(s)	344, 485, 1095
BglII	AGATCT	1 cut(s)	642
BisI	GCNGC	1 cut(s)	864
BlsI	GCNGC	1 cut(s)	865
Bme1390I	CCNGG	3 cut(s)	724, 1031, 1032
BmeT110I	CYCGRG	2 cut(s)	880, 1030
BmiI	GGNNCC	4 cut(s)	454, 482, 923, 994
BmrFI	CCNGG	3 cut(s)	724, 1031, 1032
BmsI	GCATC	4 cut(s)	132, 269, 619, 1039
BpiI	GAAGAC	1 cut(s)	1032
BpmI	CTGGAG	2 cut(s)	616, 728
Bpu10I	CCTNAGC	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	1031, 1032
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	282, 881, 1030
BsaWI	WCCGGW	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 655
Bse118I	RCCGGY	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	724
BseDI	CCNNGG	3 cut(s)	282, 881, 1030
BseGI	GGATG	3 cut(s)	194, 292, 332
BseLI	CCNNNNNNNGG	2 cut(s)	21, 655
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	725
BseXI	GCAGC	1 cut(s)	875
Bsh1236I	CGCG	1 cut(s)	665
BshFI	GGCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	171
BsiHKCI	CYCGRG	2 cut(s)	880, 1030
BsiSI	CCGG	3 cut(s)	22, 413, 1031
BslI	CCNNNNNNNGG	2 cut(s)	21, 655
BsmAI	GTCTC	2 cut(s)	519, 630
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	2 cut(s)	880, 1030
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	6 cut(s)	24, 642, 744, 921, 934, 1063
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	2 cut(s)	665, 672
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	665
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	4 cut(s)	454, 482, 923, 994
BspPI	GGATC	4 cut(s)	32, 916, 929, 929
BspQI	GCTCTTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	3 cut(s)	282, 881, 1030
BssMI	GATC	6 cut(s)	24, 642, 744, 921, 934, 1063
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	3 cut(s)	741, 754, 1076
Bst6I	CTCTTC	3 cut(s)	176, 393, 785
BstACI	GRCGYC	1 cut(s)	426
BstC8I	GCNNGC	3 cut(s)	414, 780, 1092
BstDEI	CTNAG	2 cut(s)	212, 495
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	3 cut(s)	194, 292, 332
BstFNI	CGCG	1 cut(s)	665
BstHHI	GCGC	3 cut(s)	184, 778, 863
BstKTI	GATC	6 cut(s)	27, 645, 747, 924, 937, 1066
BstMAI	GTCTC	2 cut(s)	519, 630
BstMBI	GATC	6 cut(s)	24, 642, 744, 921, 934, 1063
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	724
BstSCI	CCNGG	3 cut(s)	722, 1029, 1030
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	1 cut(s)	875
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	2 cut(s)	642, 921
BstYI	RGATCY	2 cut(s)	642, 921
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	194, 292, 332
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	3 cut(s)	171, 263, 1081
Cac8I	GCNNGC	3 cut(s)	414, 780, 1092
CciI	TCATGA	1 cut(s)	579
CfoI	GCGC	3 cut(s)	184, 778, 863
Cfr10I	RCCGGY	1 cut(s)	412
Cfr9I	CCCGGG	1 cut(s)	1030
CviAII	CATG	5 cut(s)	202, 283, 438, 580, 655
DdeI	CTNAG	2 cut(s)	212, 495
DpnI	GATC	6 cut(s)	26, 644, 746, 923, 936, 1065
DpnII	GATC	6 cut(s)	24, 642, 744, 921, 934, 1063
Eam1104I	CTCTTC	3 cut(s)	176, 393, 785
EarI	CTCTTC	3 cut(s)	176, 393, 785
Eco130I	CCWWGG	1 cut(s)	282
Eco57I	CTGAAG	3 cut(s)	254, 287, 867
Eco88I	CYCGRG	2 cut(s)	880, 1030
EcoRII	CCWGG	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	5 cut(s)	205, 286, 441, 583, 658
FatI	CATG	5 cut(s)	201, 282, 437, 579, 654
FbaI	TGATCA	1 cut(s)	744
Fnu4HI	GCNGC	1 cut(s)	864
FokI	GGATG	3 cut(s)	181, 299, 319
Fsp4HI	GCNGC	1 cut(s)	864
FspBI	CTAG	3 cut(s)	344, 485, 1095
FspI	TGCGCA	1 cut(s)	862
GlaI	GCGC	3 cut(s)	183, 777, 862
GluI	GCNGC	1 cut(s)	864
GsuI	CTGGAG	2 cut(s)	616, 728
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	3 cut(s)	22, 413, 1031
HhaI	GCGC	3 cut(s)	184, 778, 863
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	5 cut(s)	205, 286, 441, 583, 658
Hin6I	GCGC	3 cut(s)	182, 776, 861
HinP1I	GCGC	3 cut(s)	182, 776, 861
HinfI	GANTC	4 cut(s)	5, 152, 785, 949
HpaII	CCGG	3 cut(s)	22, 413, 1031
HphI	GGTGA	2 cut(s)	286, 686
Hpy166II	GTNNAC	3 cut(s)	119, 327, 806
Hpy188I	TCNGA	3 cut(s)	228, 760, 961
Hpy188III	TCNNGA	8 cut(s)	22, 580, 633, 748, 845, 893, 938, 1067
Hpy8I	GTNNAC	3 cut(s)	119, 327, 806
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	4 cut(s)	248, 285, 662, 840
HpyCH4III	ACNGT	3 cut(s)	741, 754, 1076
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	5 cut(s)	113, 145, 461, 610, 1052
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	2 cut(s)	212, 495
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	5 cut(s)	205, 286, 441, 583, 658
HspAI	GCGC	3 cut(s)	182, 776, 861
Kpn2I	TCCGGA	1 cut(s)	21
KroI	GCCGGC	1 cut(s)	412
KroNI	GCCGGC	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	6 cut(s)	24, 642, 744, 921, 934, 1063
LguI	GCTCTTC	1 cut(s)	176
LmnI	GCTCC	3 cut(s)	257, 847, 998
Lsp1109I	GCAGC	1 cut(s)	875
LweI	GCATC	4 cut(s)	132, 269, 619, 1039
MaeI	CTAG	3 cut(s)	344, 485, 1095
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	3 cut(s)	901, 1003, 1067
MalI	GATC	6 cut(s)	26, 644, 746, 923, 936, 1065
MboI	GATC	6 cut(s)	24, 642, 744, 921, 934, 1063
MboII	GAAGA	8 cut(s)	163, 259, 367, 400, 410, 802, 809, 1037
MflI	RGATCY	2 cut(s)	642, 921
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	47, 315
MmeI	TCCRAC	1 cut(s)	760
MroI	TCCGGA	1 cut(s)	21
MroNI	GCCGGC	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	731
MseI	TTAA	4 cut(s)	510, 552, 591, 770
MslI	CAYNNNNRTG	2 cut(s)	584, 615
MspI	CCGG	3 cut(s)	22, 413, 1031
MspR9I	CCNGG	3 cut(s)	724, 1031, 1032
Mva1269I	GAATGC	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	724
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	1 cut(s)	188
NaeI	GCCGGC	1 cut(s)	414
NciI	CCSGG	2 cut(s)	1031, 1032
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	6 cut(s)	24, 642, 744, 921, 934, 1063
NgoMIV	GCCGGC	1 cut(s)	412
NlaIII	CATG	5 cut(s)	205, 286, 441, 583, 658
NlaIV	GGNNCC	4 cut(s)	454, 482, 923, 994
NmuCI	GTSAC	2 cut(s)	901, 1067
NsbI	TGCGCA	1 cut(s)	862
PagI	TCATGA	1 cut(s)	579
PciSI	GCTCTTC	1 cut(s)	176
PctI	GAATGC	1 cut(s)	591
PdiI	GCCGGC	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	4 cut(s)	5, 152, 785, 949
PkrI	GCNGC	1 cut(s)	865
PsiI	TTATAA	1 cut(s)	873
Psp6I	CCWGG	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	722
PspN4I	GGNNCC	4 cut(s)	454, 482, 923, 994
PsuI	RGATCY	2 cut(s)	642, 921
RseI	CAYNNNNRTG	2 cut(s)	584, 615
SapI	GCTCTTC	1 cut(s)	176
SaqAI	TTAA	4 cut(s)	510, 552, 591, 770
SatI	GCNGC	1 cut(s)	864
Sau3AI	GATC	6 cut(s)	24, 642, 744, 921, 934, 1063
ScrFI	CCNGG	3 cut(s)	724, 1031, 1032
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	4 cut(s)	132, 269, 619, 1039
SmaI	CCCGGG	1 cut(s)	1032
SmiMI	CAYNNNNRTG	2 cut(s)	584, 615
Sse9I	AATT	2 cut(s)	47, 315
SsiI	CCGC	2 cut(s)	665, 672
SspMI	CTAG	3 cut(s)	344, 485, 1095
StyD4I	CCNGG	3 cut(s)	722, 1029, 1030
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	741, 754, 1076
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	4 cut(s)	96, 206, 378, 788
TasI	AATT	2 cut(s)	47, 315
TfiI	GAWTC	4 cut(s)	5, 152, 785, 949
Tru1I	TTAA	4 cut(s)	510, 552, 591, 770
Tru9I	TTAA	4 cut(s)	510, 552, 591, 770
TscAI	CASTG	3 cut(s)	171, 270, 1081
TseFI	GTSAC	2 cut(s)	901, 1067
TseI	GCWGC	1 cut(s)	863
Tsp45I	GTSAC	2 cut(s)	901, 1067
TspDTI	ATGAA	4 cut(s)	91, 329, 368, 912
TspGWI	ACGGA	2 cut(s)	381, 991
TspMI	CCCGGG	1 cut(s)	1030
TspRI	CASTG	3 cut(s)	171, 270, 1081
XapI	RAATTY	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1018
XmaI	CCCGGG	1 cut(s)	1030
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	3 cut(s)	344, 485, 1095
ZraI	GACGTC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.