Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8130288.1

Orthogroup ID

OG0002405

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 566

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8130288.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 292 bp

atgttcacctccaagtgctcggcaactgctattatggccaagattgagcatgaggccaagggcttgagcttcatggtggggaacgtcaaggactttaaattaaggctacaaggcccaaatgaagggaggaaagggaggctttcggtgaccgcggaggtcttcgaggtggctccagaggttgcggtggtcgagttttccaagtctgctggggatactttggagtatgtcaagttttgtgaagaagatgttaggcctgcgttgaaagacattgtttggacatggcaaggtgacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030001 GO:0035556 GO:0036211 GO:0042538 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

97

Amino Acids

10.77

Weight (kDa)

5.44

Isoelectric Point (pI)

17.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002405)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g25640
malus_domestica	MD01G1163600.v1.1 MD02G1008400.v1.1
prunus_persica	Prupe.2G261600_v2.0.a1 Prupe.2G261600_v2.0.a1
pyrus_communis	pycom10g23210
rosa_chinensis	RchiOBHm_Chr1g0371771 RchiOBHm_Chr1g0371781 RchiOBHm_Chr1g0371791
rosa_laevigata	RLG00000011059 RLG00000016229 RLG00000018596 RLG00000026588 RLG00000026589 RLG00000026941 RLG00000026942
rosa_multiflora	Rmu_co8130288.1_g000001 Rmu_co8250369.1_g000001 Rmu_sc0001755.1_g000050 Rmu_sc0001755.1_g000051 Rmu_sc0002002.1_g000024 Rmu_sc0003033.1_g000017
rosa_roxburghii	Rroxscaffold_1G00037910 Rroxscaffold_1G00037920 Rroxscaffold_1G00037930 Rroxscaffold_1G00037940 Rroxscaffold_1G00037950 Rroxscaffold_1G00037960 Rroxscaffold_1G00037970 Rroxscaffold_4G00285430 Rroxscaffold_4G00301130 Rroxscaffold_4G00301140
rosa_rugosa	Rorug01G0366400 Rorug01G0366500 Rorug02G0441700
rosa_samantha	Rh1AG376300 Rh1AG376400 Rh1AG376500 Rh1BG339700 Rh1BG339800
rosa_wichuraiana	Rw1G033110 Rw1G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	152
AciI	CCGC	3 cut(s)	150, 152, 182
AcoI	YGGCCR	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw21I	GWGCWC	1 cut(s)	20
AoxI	GGCC	4 cut(s)	36, 54, 112, 251
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	157
BalI	TGGCCA	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	20
BciVI	GTATCC	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	85
BsaJI	CCNNGG	2 cut(s)	57, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	57, 150
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	4 cut(s)	38, 56, 114, 253
BsiHKAI	GWGCWC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	122
BsnI	GGCC	4 cut(s)	38, 56, 114, 253
Bsp1286I	GDGCHC	1 cut(s)	20
BspACI	CCGC	3 cut(s)	150, 152, 182
BspANI	GGCC	4 cut(s)	38, 56, 114, 253
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	57, 150
BssT1I	CCWWGG	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstPI	GGTNACC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	4 cut(s)	38, 56, 114, 253
BtgI	CCRYGG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	113
Cfr42I	CCGCGG	1 cut(s)	153
CviAII	CATG	3 cut(s)	50, 73, 279
CviJI	RGCY	9 cut(s)	38, 56, 63, 69, 106, 114, 139, 170, 253
CviKI_1	RGCY	9 cut(s)	38, 56, 63, 69, 106, 114, 139, 170, 253
DraI	TTTAAA	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	253
Eco91I	GGTNACC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	3 cut(s)	53, 76, 282
FaiI	YATR	5 cut(s)	35, 51, 74, 225, 280
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	3 cut(s)	49, 72, 278
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	4 cut(s)	38, 56, 114, 253
Hin1II	CATG	3 cut(s)	53, 76, 282
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	53, 76, 282
KspI	CCGCGG	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	3 cut(s)	186, 192, 267
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	145, 287
MboII	GAAGA	3 cut(s)	151, 251, 254
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	1 cut(s)	38
MnlI	CCTC	7 cut(s)	19, 46, 120, 129, 148, 157, 169
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	2 cut(s)	96, 101
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	35
NlaIII	CATG	3 cut(s)	53, 76, 282
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	145, 287
PceI	AGGCCT	1 cut(s)	253
PspEI	GGTNACC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	113
SacII	CCGCGG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	96, 101
Sau96I	GGNCC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	7 cut(s)	11, 71, 87, 159, 168, 180, 289
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	1 cut(s)	98
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	3 cut(s)	150, 152, 182
StuI	AGGCCT	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	2 cut(s)	162, 189
TasI	AATT	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	96, 101
Tru9I	TTAA	2 cut(s)	96, 101
TseFI	GTSAC	2 cut(s)	145, 287
Tsp45I	GTSAC	2 cut(s)	145, 287
TspDTI	ATGAA	2 cut(s)	61, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.