MD02G1284400.v1.1

Cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0001291
Physical Location & Seq
Reverse (-)
34091176 .. 34091523
348 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1284400.v1.1.491

Sequence Viewer

Length: 348 bp
ATGGCCCAATCTTTTGGGGCATTGCCCTTGCCACCACCAACTTCCCTCGCGGACCTCAAACTCCTCCGTTCCGAGGTTGGAAGACTCGCTTTGTCATCTGCCGTCATCTCCGACTTGTGTTCCTGGTTTCTTTTTCTGCTCGGAATGGCAGCAGTCAATATGACCAATATGGTAGCGGTTGGGTCCACTTTGGCCTTTATAGCAGTGTGCACATTCCTAATACGTCCGGCTCTCCCGCGGATATTAACCAGCGAGAGAGAGAAAGAAGATACCGACTACAGTCATCATATGTGCTTTGTTCTCGCTGGGGTGATGCTTTGTGGGTTCATAATATTAACTACATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

116

Amino Acids

12.43

Weight (kDa)

6.02

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 16 - 110 1.3e-06 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 50, 238
AciI CCGC 4 cut(s) 50, 176, 236, 238
AfiI CCNNNNNNNGG 1 cut(s) 73
AjnI CCWGG 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 208
AoxI GGCC 2 cut(s) 3, 192
ApaLI GTGCAC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 149
AspS9I GGNCC 3 cut(s) 4, 52, 183
AsuHPI GGTGA 1 cut(s) 322
AvaII GGWCC 2 cut(s) 52, 183
BaeGI GKGCMC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 1 cut(s) 161
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 124
Bme18I GGWCC 2 cut(s) 52, 183
BmgT120I GGNCC 3 cut(s) 4, 52, 183
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 303
BoxI GACNNNNGTC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 88
BsaJI CCNNGG 2 cut(s) 72, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 2 cut(s) 72, 236
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 20
BseRI GAGGAG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 50, 238
BshFI GGCC 2 cut(s) 5, 194
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 73
BsnI GGCC 2 cut(s) 5, 194
Bsp1286I GDGCHC 1 cut(s) 212
BspACI CCGC 4 cut(s) 50, 176, 236, 238
BspANI GGCC 2 cut(s) 5, 194
BspFNI CGCG 2 cut(s) 50, 238
BspLI GGNNCC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 72, 236
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 236
BstFNI CGCG 2 cut(s) 50, 238
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 124
BstPAI GACNNNNGTC 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 2 cut(s) 50, 238
BstV1I GCAGC 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 14
BsuRI GGCC 2 cut(s) 5, 194
BtgI CCRYGG 1 cut(s) 236
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
Cfr13I GGNCC 3 cut(s) 4, 52, 183
Cfr42I CCGCGG 1 cut(s) 239
CviJI RGCY 3 cut(s) 5, 194, 230
CviKI_1 RGCY 3 cut(s) 5, 194, 230
Eco47I GGWCC 2 cut(s) 52, 183
EcoRII CCWGG 1 cut(s) 122
FaiI YATR 6 cut(s) 161, 170, 200, 288, 290, 329
FalI AAGNNNNNCTT 2 cut(s) 73, 105
FauI CCCGC 1 cut(s) 243
FauNDI CATATG 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 150
GsaI CCCAGC 1 cut(s) 309
HaeIII GGCC 2 cut(s) 5, 194
HapII CCGG 1 cut(s) 227
HinfI GANTC 1 cut(s) 84
HpaII CCGG 1 cut(s) 227
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 2 cut(s) 186, 210
Hpy188I TCNGA 3 cut(s) 73, 112, 143
Hpy8I GTNNAC 2 cut(s) 186, 210
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 223
KspI CCGCGG 1 cut(s) 239
LpnPI CCDG 5 cut(s) 109, 136, 240, 262, 291
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 303
MaeII ACGT 1 cut(s) 223
MboII GAAGA 2 cut(s) 93, 278
MhlI GDGCHC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 78
MmeI TCCRAC 2 cut(s) 58, 135
MnlI CCTC 4 cut(s) 56, 65, 67, 74
MseI TTAA 2 cut(s) 245, 335
MspA1I CMGCKG 1 cut(s) 238
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 124
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 2 cut(s) 50, 238
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeI CATATG 1 cut(s) 288
NlaIV GGNNCC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
PshAI GACNNNNGTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 3 cut(s) 4, 52, 183
SacII CCGCGG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 245, 335
SatI GCNGC 1 cut(s) 150
Sau96I GGNCC 3 cut(s) 4, 52, 183
SchI GAGTC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 124
SduI GDGCHC 1 cut(s) 212
SetI ASST 3 cut(s) 57, 78, 226
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 277
Sfr303I CCGCGG 1 cut(s) 239
SgrBI CCGCGG 1 cut(s) 239
SinI GGWCC 2 cut(s) 52, 183
SsiI CCGC 4 cut(s) 50, 176, 236, 238
SspI AATATT 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 281
TaiI ACGT 1 cut(s) 226
Tru1I TTAA 2 cut(s) 245, 335
Tru9I TTAA 2 cut(s) 245, 335
TscAI CASTG 1 cut(s) 210
TseI GCWGC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 56
TspRI CASTG 1 cut(s) 210
VneI GTGCAC 1 cut(s) 208
VpaK11BI GGWCC 2 cut(s) 52, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.