Cation H( ) antiporter
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 314 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1564 |
| AccI | GTMKAC | 2 cut(s) | 2117, 2124 |
| AciI | CCGC | 3 cut(s) | 517, 1402, 2244 |
| AclI | AACGTT | 1 cut(s) | 559 |
| AclWI | GGATC | 5 cut(s) | 1311, 1352, 1450, 1463, 1923 |
| AcoI | YGGCCR | 3 cut(s) | 1576, 1587, 2065 |
| AcsI | RAATTY | 5 cut(s) | 13, 25, 320, 630, 2286 |
| AcyI | GRCGYC | 1 cut(s) | 1554 |
| AfaI | GTAC | 3 cut(s) | 483, 513, 1707 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 492, 1564, 1585, 1639, 1768 |
| AflII | CTTAAG | 1 cut(s) | 2225 |
| AflIII | ACRYGT | 2 cut(s) | 387, 2524 |
| AhlI | ACTAGT | 1 cut(s) | 1561 |
| AjnI | CCWGG | 2 cut(s) | 821, 887 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1838, 1870 |
| AleI | CACNNNNGTG | 1 cut(s) | 1721 |
| Alw21I | GWGCWC | 5 cut(s) | 839, 867, 1898, 2419, 2488 |
| Alw26I | GTCTC | 4 cut(s) | 223, 350, 1705, 2128 |
| Alw44I | GTGCAC | 1 cut(s) | 835 |
| AlwI | GGATC | 5 cut(s) | 1311, 1352, 1450, 1463, 1923 |
| Ama87I | CYCGRG | 1 cut(s) | 1284 |
| AoxI | GGCC | 4 cut(s) | 1576, 1587, 2065, 2344 |
| ApaLI | GTGCAC | 1 cut(s) | 835 |
| ApeKI | GCWGC | 3 cut(s) | 686, 1187, 1928 |
| ApoI | RAATTY | 5 cut(s) | 13, 25, 320, 630, 2286 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 567, 599, 2384, 2416 |
| AseI | ATTAAT | 2 cut(s) | 204, 750 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1449, 2286 |
| AspA2I | CCTAGG | 1 cut(s) | 971 |
| AspLEI | GCGC | 2 cut(s) | 240, 1982 |
| AspS9I | GGNCC | 4 cut(s) | 284, 495, 575, 1361 |
| AsuC2I | CCSGG | 1 cut(s) | 436 |
| AvaI | CYCGRG | 1 cut(s) | 1284 |
| AvaII | GGWCC | 4 cut(s) | 284, 495, 575, 1361 |
| AvrII | CCTAGG | 1 cut(s) | 971 |
| BaeGI | GKGCMC | 1 cut(s) | 839 |
| BalI | TGGCCA | 1 cut(s) | 2067 |
| BamHI | GGATCC | 1 cut(s) | 1455 |
| BanII | GRGCYC | 1 cut(s) | 867 |
| BauI | CACGAG | 3 cut(s) | 215, 1634, 1745 |
| BbsI | GAAGAC | 1 cut(s) | 1996 |
| Bbv12I | GWGCWC | 5 cut(s) | 839, 867, 1898, 2419, 2488 |
| BbvCI | CCTCAGC | 1 cut(s) | 1767 |
| BbvI | GCAGC | 3 cut(s) | 698, 1199, 1915 |
| BccI | CCATC | 4 cut(s) | 64, 1820, 1961, 2053 |
| BceAI | ACGGC | 2 cut(s) | 674, 1876 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1165, 1199 |
| BciT130I | CCWGG | 2 cut(s) | 823, 889 |
| BciVI | GTATCC | 1 cut(s) | 561 |
| BcnI | CCSGG | 1 cut(s) | 436 |
| BcoDI | GTCTC | 4 cut(s) | 223, 350, 1705, 2128 |
| BcuI | ACTAGT | 1 cut(s) | 1561 |
| BfmI | CTRYAG | 4 cut(s) | 65, 360, 684, 936 |
| BfrI | CTTAAG | 1 cut(s) | 2225 |
| BfuI | GTATCC | 1 cut(s) | 561 |
| BglII | AGATCT | 1 cut(s) | 1288 |
| BisI | GCNGC | 3 cut(s) | 687, 1188, 1929 |
| BlnI | CCTAGG | 1 cut(s) | 971 |
| BlsI | GCNGC | 3 cut(s) | 688, 1189, 1930 |
| Bme1390I | CCNGG | 3 cut(s) | 436, 823, 889 |
| Bme18I | GGWCC | 4 cut(s) | 284, 495, 575, 1361 |
| BmeT110I | CYCGRG | 1 cut(s) | 1284 |
| BmgT120I | GGNCC | 4 cut(s) | 284, 495, 575, 1361 |
| BmiI | GGNNCC | 4 cut(s) | 285, 1363, 1438, 1457 |
| BmrFI | CCNGG | 3 cut(s) | 436, 823, 889 |
| BmrI | ACTGGG | 1 cut(s) | 290 |
| BmsI | GCATC | 3 cut(s) | 907, 1026, 1872 |
| BmuI | ACTGGG | 1 cut(s) | 290 |
| BpiI | GAAGAC | 1 cut(s) | 1996 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1064, 1767 |
| BpuEI | CTTGAG | 1 cut(s) | 629 |
| BpuMI | CCSGG | 1 cut(s) | 436 |
| BsaAI | YACGTR | 1 cut(s) | 248 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1845 |
| BsaHI | GRCGYC | 1 cut(s) | 1554 |
| BsaI | GGTCTC | 1 cut(s) | 223 |
| BsaJI | CCNNGG | 5 cut(s) | 774, 971, 1584, 2014, 2347 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 936, 966, 1643, 1673 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 492, 1564, 1585, 1639, 1768 |
| Bse118I | RCCGGY | 1 cut(s) | 1574 |
| Bse1I | ACTGG | 3 cut(s) | 285, 422, 832 |
| Bse3DI | GCAATG | 2 cut(s) | 453, 738 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1845 |
| BseBI | CCWGG | 2 cut(s) | 823, 889 |
| BseDI | CCNNGG | 5 cut(s) | 774, 971, 1584, 2014, 2347 |
| BseGI | GGATG | 3 cut(s) | 304, 1794, 2064 |
| BseJI | GATNNNNATC | 1 cut(s) | 1845 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 492, 1564, 1585, 1639, 1768 |
| BseMI | GCAATG | 2 cut(s) | 453, 738 |
| BseMII | CTCAG | 3 cut(s) | 218, 723, 1758 |
| BseNI | ACTGG | 3 cut(s) | 285, 422, 832 |
| BseRI | GAGGAG | 2 cut(s) | 641, 1652 |
| BseSI | GKGCMC | 1 cut(s) | 839 |
| BseXI | GCAGC | 3 cut(s) | 698, 1199, 1915 |
| BseYI | CCCAGC | 1 cut(s) | 811 |
| BshFI | GGCC | 4 cut(s) | 1578, 1589, 2067, 2346 |
| BsiHKAI | GWGCWC | 5 cut(s) | 839, 867, 1898, 2419, 2488 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1284 |
| BsiSI | CCGG | 2 cut(s) | 435, 1575 |
| BslFI | GGGAC | 3 cut(s) | 1843, 2035, 2535 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 492, 1564, 1585, 1639, 1768 |
| BsmAI | GTCTC | 4 cut(s) | 223, 350, 1705, 2128 |
| BsmFI | GGGAC | 3 cut(s) | 1843, 2035, 2535 |
| BsmI | GAATGC | 1 cut(s) | 931 |
| BsnI | GGCC | 4 cut(s) | 1578, 1589, 2067, 2346 |
| Bso31I | GGTCTC | 1 cut(s) | 223 |
| BsoBI | CYCGRG | 1 cut(s) | 1284 |
| Bsp1286I | GDGCHC | 5 cut(s) | 839, 867, 1898, 2419, 2488 |
| Bsp1407I | TGTACA | 1 cut(s) | 1705 |
| Bsp19I | CCATGG | 1 cut(s) | 2347 |
| BspACI | CCGC | 3 cut(s) | 517, 1402, 2244 |
| BspANI | GGCC | 4 cut(s) | 1578, 1589, 2067, 2346 |
| BspCNI | CTCAG | 3 cut(s) | 219, 722, 1759 |
| BspHI | TCATGA | 1 cut(s) | 1239 |
| BspLI | GGNNCC | 4 cut(s) | 285, 1363, 1438, 1457 |
| BspMAI | CTGCAG | 2 cut(s) | 69, 688 |
| BspPI | GGATC | 5 cut(s) | 1311, 1352, 1450, 1463, 1923 |
| BspQI | GCTCTTC | 1 cut(s) | 2256 |
| BspTI | CTTAAG | 1 cut(s) | 2225 |
| BspTNI | GGTCTC | 1 cut(s) | 223 |
| BsrDI | GCAATG | 2 cut(s) | 453, 738 |
| BsrFI | RCCGGY | 1 cut(s) | 1574 |
| BsrGI | TGTACA | 1 cut(s) | 1705 |
| BsrI | ACTGG | 3 cut(s) | 285, 422, 832 |
| BssAI | RCCGGY | 1 cut(s) | 1574 |
| BssECI | CCNNGG | 5 cut(s) | 774, 971, 1584, 2014, 2347 |
| BssNI | GRCGYC | 1 cut(s) | 1554 |
| BssSI | CACGAG | 3 cut(s) | 215, 1634, 1745 |
| BssT1I | CCWWGG | 3 cut(s) | 971, 2014, 2347 |
| Bst2BI | CACGAG | 3 cut(s) | 215, 1634, 1745 |
| Bst2UI | CCWGG | 2 cut(s) | 823, 889 |
| Bst4CI | ACNGT | 8 cut(s) | 94, 361, 1351, 1720, 2089, 2122, 2538, 2585 |
| Bst6I | CTCTTC | 3 cut(s) | 168, 1049, 2256 |
| BstACI | GRCGYC | 1 cut(s) | 1554 |
| BstAFI | CTTAAG | 1 cut(s) | 2225 |
| BstAUI | TGTACA | 1 cut(s) | 1705 |
| BstBAI | YACGTR | 1 cut(s) | 248 |
| BstDEI | CTNAG | 7 cut(s) | 227, 352, 449, 709, 1064, 1274, 1767 |
| BstDSI | CCRYGG | 1 cut(s) | 2347 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1766 |
| BstF5I | GGATG | 3 cut(s) | 304, 1794, 2064 |
| BstHHI | GCGC | 2 cut(s) | 240, 1982 |
| BstMAI | GTCTC | 4 cut(s) | 223, 350, 1705, 2128 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 623, 683, 785, 1160, 1600, 1620, 1629, 1977, 2104 |
| BstNI | CCWGG | 2 cut(s) | 823, 889 |
| BstNSI | RCATGY | 5 cut(s) | 391, 924, 1467, 1935, 2528 |
| BstSCI | CCNGG | 3 cut(s) | 434, 821, 887 |
| BstSFI | CTRYAG | 4 cut(s) | 65, 360, 684, 936 |
| BstSLI | GKGCMC | 1 cut(s) | 839 |
| BstV1I | GCAGC | 3 cut(s) | 698, 1199, 1915 |
| BstV2I | GAAGAC | 1 cut(s) | 1996 |
| BstX2I | RGATCY | 2 cut(s) | 1288, 1455 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1550 |
| BstYI | RGATCY | 2 cut(s) | 1288, 1455 |
| BsuI | GTATCC | 1 cut(s) | 561 |
| BsuRI | GGCC | 4 cut(s) | 1578, 1589, 2067, 2346 |
| BtgI | CCRYGG | 1 cut(s) | 2347 |
| BtgZI | GCGATG | 1 cut(s) | 1613 |
| BtsCI | GGATG | 3 cut(s) | 304, 1794, 2064 |
| BtsIMutI | CAGTG | 2 cut(s) | 839, 2590 |
| CciI | TCATGA | 1 cut(s) | 1239 |
| CfoI | GCGC | 2 cut(s) | 240, 1982 |
| Cfr10I | RCCGGY | 1 cut(s) | 1574 |
| Cfr13I | GGNCC | 4 cut(s) | 284, 495, 575, 1361 |
| CseI | GACGC | 2 cut(s) | 1543, 1616 |
| Csp6I | GTAC | 3 cut(s) | 482, 512, 1706 |
| CviQI | GTAC | 3 cut(s) | 482, 512, 1706 |
| DdeI | CTNAG | 7 cut(s) | 227, 352, 449, 709, 1064, 1274, 1767 |
| DraI | TTTAAA | 2 cut(s) | 106, 1479 |
| EaeI | YGGCCR | 3 cut(s) | 1576, 1587, 2065 |
| Eam1104I | CTCTTC | 3 cut(s) | 168, 1049, 2256 |
| EarI | CTCTTC | 3 cut(s) | 168, 1049, 2256 |
| Ecl136II | GAGCTC | 1 cut(s) | 865 |
| Eco130I | CCWWGG | 3 cut(s) | 971, 2014, 2347 |
| Eco24I | GRGCYC | 1 cut(s) | 867 |
| Eco31I | GGTCTC | 1 cut(s) | 223 |
| Eco47I | GGWCC | 4 cut(s) | 284, 495, 575, 1361 |
| Eco53kI | GAGCTC | 1 cut(s) | 865 |
| Eco88I | CYCGRG | 1 cut(s) | 1284 |
| EcoICRI | GAGCTC | 1 cut(s) | 865 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1766 |
| EcoO109I | RGGNCCY | 1 cut(s) | 575 |
| EcoRI | GAATTC | 3 cut(s) | 13, 25, 630 |
| EcoRII | CCWGG | 2 cut(s) | 821, 887 |
| EcoT14I | CCWWGG | 3 cut(s) | 971, 2014, 2347 |
| EcoT22I | ATGCAT | 3 cut(s) | 922, 2053, 2210 |
| EcoT38I | GRGCYC | 1 cut(s) | 867 |
| ErhI | CCWWGG | 3 cut(s) | 971, 2014, 2347 |
| FaqI | GGGAC | 3 cut(s) | 1843, 2035, 2535 |
| FauI | CCCGC | 1 cut(s) | 1409 |
| FauNDI | CATATG | 2 cut(s) | 1754, 2047 |
| FblI | GTMKAC | 2 cut(s) | 2117, 2124 |
| Fnu4HI | GCNGC | 3 cut(s) | 687, 1188, 1929 |
| FokI | GGATG | 3 cut(s) | 291, 1781, 2071 |
| FriOI | GRGCYC | 1 cut(s) | 867 |
| Fsp4HI | GCNGC | 3 cut(s) | 687, 1188, 1929 |
| GlaI | GCGC | 2 cut(s) | 239, 1981 |
| GluI | GCNGC | 3 cut(s) | 687, 1188, 1929 |
| GsaI | CCCAGC | 1 cut(s) | 815 |
| HaeIII | GGCC | 4 cut(s) | 1578, 1589, 2067, 2346 |
| HapII | CCGG | 2 cut(s) | 435, 1575 |
| HgaI | GACGC | 2 cut(s) | 1543, 1616 |
| HhaI | GCGC | 2 cut(s) | 240, 1982 |
| Hin1I | GRCGYC | 1 cut(s) | 1554 |
| Hin6I | GCGC | 2 cut(s) | 238, 1980 |
| HinP1I | GCGC | 2 cut(s) | 238, 1980 |
| HincII | GTYRAC | 4 cut(s) | 348, 771, 1783, 2118 |
| HindII | GTYRAC | 4 cut(s) | 348, 771, 1783, 2118 |
| HindIII | AAGCTT | 1 cut(s) | 991 |
| HinfI | GANTC | 6 cut(s) | 158, 520, 906, 1233, 1841, 2077 |
| HpaI | GTTAAC | 1 cut(s) | 1783 |
| HpaII | CCGG | 2 cut(s) | 435, 1575 |
| Hpy166II | GTNNAC | 7 cut(s) | 348, 382, 771, 837, 1783, 2118, 2125 |
| Hpy188I | TCNGA | 6 cut(s) | 40, 419, 661, 700, 1083, 1455 |
| Hpy188III | TCNNGA | 6 cut(s) | 226, 1214, 1240, 1286, 2033, 2442 |
| Hpy8I | GTNNAC | 7 cut(s) | 348, 382, 771, 837, 1783, 2118, 2125 |
| Hpy99I | CGWCG | 6 cut(s) | 491, 2119, 2134, 2393, 2396, 2399 |
| HpyAV | CCTTC | 8 cut(s) | 436, 535, 1375, 1384, 1860, 2155, 2306, 2374 |
| HpyCH4III | ACNGT | 8 cut(s) | 94, 361, 1351, 1720, 2089, 2122, 2538, 2585 |
| HpyCH4IV | ACGT | 4 cut(s) | 247, 559, 1832, 2114 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 623, 683, 785, 1160, 1600, 1620, 1629, 1977, 2104 |
| HpyF3I | CTNAG | 7 cut(s) | 227, 352, 449, 709, 1064, 1274, 1767 |
| HpySE526I | ACGT | 4 cut(s) | 247, 559, 1832, 2114 |
| Hsp92I | GRCGYC | 1 cut(s) | 1554 |
| HspAI | GCGC | 2 cut(s) | 238, 1980 |
| KspAI | GTTAAC | 1 cut(s) | 1783 |
| LguI | GCTCTTC | 1 cut(s) | 2256 |
| LmnI | GCTCC | 7 cut(s) | 654, 870, 944, 959, 2304, 2414, 2491 |
| Lsp1109I | GCAGC | 3 cut(s) | 698, 1199, 1915 |
| LweI | GCATC | 3 cut(s) | 907, 1026, 1872 |
| MaeII | ACGT | 4 cut(s) | 247, 559, 1832, 2114 |
| MaeIII | GTNAC | 3 cut(s) | 88, 98, 1946 |
| MflI | RGATCY | 2 cut(s) | 1288, 1455 |
| MhlI | GDGCHC | 5 cut(s) | 839, 867, 1898, 2419, 2488 |
| MlsI | TGGCCA | 1 cut(s) | 2067 |
| MluNI | TGGCCA | 1 cut(s) | 2067 |
| MlyI | GAGTC | 1 cut(s) | 1242 |
| MmeI | TCCRAC | 5 cut(s) | 311, 723, 1339, 1414, 1582 |
| Mox20I | TGGCCA | 1 cut(s) | 2067 |
| Mph1103I | ATGCAT | 3 cut(s) | 922, 2053, 2210 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1449, 2286 |
| MscI | TGGCCA | 1 cut(s) | 2067 |
| MseI | TTAA | 8 cut(s) | 105, 204, 750, 1193, 1478, 1782, 2042, 2226 |
| MslI | CAYNNNNRTG | 4 cut(s) | 507, 1034, 1721, 2050 |
| Msp20I | TGGCCA | 1 cut(s) | 2067 |
| MspA1I | CMGCKG | 1 cut(s) | 184 |
| MspCI | CTTAAG | 1 cut(s) | 2225 |
| MspI | CCGG | 2 cut(s) | 435, 1575 |
| MspR9I | CCNGG | 3 cut(s) | 436, 823, 889 |
| Mva1269I | GAATGC | 1 cut(s) | 931 |
| MvaI | CCWGG | 2 cut(s) | 823, 889 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 623, 683, 785, 1160, 1600, 1620, 1629, 1977, 2104 |
| NciI | CCSGG | 1 cut(s) | 436 |
| NcoI | CCATGG | 1 cut(s) | 2347 |
| NdeI | CATATG | 2 cut(s) | 1754, 2047 |
| NlaIV | GGNNCC | 4 cut(s) | 285, 1363, 1438, 1457 |
| NmeAIII | GCCGAG | 2 cut(s) | 755, 1565 |
| NmuCI | GTSAC | 1 cut(s) | 88 |
| NsiI | ATGCAT | 3 cut(s) | 922, 2053, 2210 |
| NspI | RCATGY | 5 cut(s) | 391, 924, 1467, 1935, 2528 |
| OliI | CACNNNNGTG | 1 cut(s) | 1721 |
| PaeI | GCATGC | 1 cut(s) | 1467 |
| PaeR7I | CTCGAG | 1 cut(s) | 1284 |
| PagI | TCATGA | 1 cut(s) | 1239 |
| PciI | ACATGT | 2 cut(s) | 387, 2524 |
| PciSI | GCTCTTC | 1 cut(s) | 2256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2394 |
| PctI | GAATGC | 1 cut(s) | 931 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1449, 2286 |
| PfeI | GAWTC | 5 cut(s) | 158, 520, 906, 1841, 2077 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1564 |
| PfoI | TCCNGGA | 1 cut(s) | 821 |
| PkrI | GCNGC | 3 cut(s) | 688, 1189, 1930 |
| PleI | GAGTC | 1 cut(s) | 1241 |
| PpsI | GAGTC | 1 cut(s) | 1241 |
| Ppu21I | YACGTR | 1 cut(s) | 248 |
| PpuMI | RGGWCCY | 1 cut(s) | 575 |
| PscI | ACATGT | 2 cut(s) | 387, 2524 |
| PshBI | ATTAAT | 2 cut(s) | 204, 750 |
| PsiI | TTATAA | 1 cut(s) | 314 |
| Psp124BI | GAGCTC | 1 cut(s) | 867 |
| Psp1406I | AACGTT | 1 cut(s) | 559 |
| Psp5II | RGGWCCY | 1 cut(s) | 575 |
| Psp6I | CCWGG | 2 cut(s) | 821, 887 |
| PspFI | CCCAGC | 1 cut(s) | 811 |
| PspGI | CCWGG | 2 cut(s) | 821, 887 |
| PspN4I | GGNNCC | 4 cut(s) | 285, 1363, 1438, 1457 |
| PspPI | GGNCC | 4 cut(s) | 284, 495, 575, 1361 |
| PspPPI | RGGWCCY | 1 cut(s) | 575 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 789, 821 |
| PstI | CTGCAG | 2 cut(s) | 69, 688 |
| PsuI | RGATCY | 2 cut(s) | 1288, 1455 |
| PvuII | CAGCTG | 1 cut(s) | 184 |
| RsaI | GTAC | 3 cut(s) | 483, 513, 1707 |
| RsaNI | GTAC | 3 cut(s) | 482, 512, 1706 |
| RseI | CAYNNNNRTG | 4 cut(s) | 507, 1034, 1721, 2050 |
| SacI | GAGCTC | 1 cut(s) | 867 |
| SalI | GTCGAC | 1 cut(s) | 2116 |
| SapI | GCTCTTC | 1 cut(s) | 2256 |
| SaqAI | TTAA | 8 cut(s) | 105, 204, 750, 1193, 1478, 1782, 2042, 2226 |
| SatI | GCNGC | 3 cut(s) | 687, 1188, 1929 |
| Sau96I | GGNCC | 4 cut(s) | 284, 495, 575, 1361 |
| SchI | GAGTC | 1 cut(s) | 1242 |
| ScrFI | CCNGG | 3 cut(s) | 436, 823, 889 |
| SduI | GDGCHC | 5 cut(s) | 839, 867, 1898, 2419, 2488 |
| SfaNI | GCATC | 3 cut(s) | 907, 1026, 1872 |
| SfcI | CTRYAG | 4 cut(s) | 65, 360, 684, 936 |
| Sfr274I | CTCGAG | 1 cut(s) | 1284 |
| SinI | GGWCC | 4 cut(s) | 284, 495, 575, 1361 |
| SlaI | CTCGAG | 1 cut(s) | 1284 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 507, 1034, 1721, 2050 |
| SmlI | CTYRAG | 3 cut(s) | 644, 1284, 2225 |
| SmoI | CTYRAG | 3 cut(s) | 644, 1284, 2225 |
| SpeI | ACTAGT | 1 cut(s) | 1561 |
| SphI | GCATGC | 1 cut(s) | 1467 |
| SsiI | CCGC | 3 cut(s) | 517, 1402, 2244 |
| SspI | AATATT | 1 cut(s) | 1941 |
| SstI | GAGCTC | 1 cut(s) | 867 |
| StyD4I | CCNGG | 3 cut(s) | 434, 821, 887 |
| StyI | CCWWGG | 3 cut(s) | 971, 2014, 2347 |
| TaaI | ACNGT | 8 cut(s) | 94, 361, 1351, 1720, 2089, 2122, 2538, 2585 |
| TaiI | ACGT | 4 cut(s) | 250, 562, 1835, 2117 |
| TaqII | GACCGA | 1 cut(s) | 2531 |
| TatI | WGTACW | 2 cut(s) | 511, 1705 |
| TfiI | GAWTC | 5 cut(s) | 158, 520, 906, 1841, 2077 |
| Tru1I | TTAA | 8 cut(s) | 105, 204, 750, 1193, 1478, 1782, 2042, 2226 |
| Tru9I | TTAA | 8 cut(s) | 105, 204, 750, 1193, 1478, 1782, 2042, 2226 |
| TscAI | CASTG | 2 cut(s) | 839, 2590 |
| TseFI | GTSAC | 1 cut(s) | 88 |
| TseI | GCWGC | 3 cut(s) | 686, 1187, 1928 |
| Tsp45I | GTSAC | 1 cut(s) | 88 |
| TspDTI | ATGAA | 9 cut(s) | 26, 155, 190, 772, 868, 898, 1256, 2249, 2511 |
| TspGWI | ACGGA | 1 cut(s) | 1656 |
| TspRI | CASTG | 2 cut(s) | 839, 2590 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1564 |
| Vha464I | CTTAAG | 1 cut(s) | 2225 |
| VneI | GTGCAC | 1 cut(s) | 835 |
| VpaK11BI | GGWCC | 4 cut(s) | 284, 495, 575, 1361 |
| VspI | ATTAAT | 2 cut(s) | 204, 750 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1766 |
| XapI | RAATTY | 5 cut(s) | 13, 25, 320, 630, 2286 |
| XceI | RCATGY | 5 cut(s) | 391, 924, 1467, 1935, 2528 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 662, 819, 1255 |
| XhoI | CTCGAG | 1 cut(s) | 1284 |
| XmaJI | CCTAGG | 1 cut(s) | 971 |
| XmiI | GTMKAC | 2 cut(s) | 2117, 2124 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1449, 2286 |
| Zsp2I | ATGCAT | 3 cut(s) | 922, 2053, 2210 |