Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001291

Physical Location & Seq

Genomic Coordinates Reverse (-)

24366289 .. 24367524

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G283400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGCTTGCAATTTTGATAATGACGTCAGCGGTTGGACCCATTTTGGCTTTGATTTACAAGTCGAATGTGCCATCTAAGCAGCACAAGCACAGAAGCATAAGAAGCATACAACCCAACTCAGAGTTTCGAATCCTTACTTGCTTCCATTCAACAAGCAATGTTTCAAGCGTCATCAATCTGTTGGAGATTTCCAATCCCACCAAACAATCCCCGATGTTCGTCTTTGCGGTCCATCTGGTGGAGCTCAGTGGCCATGCTTCTGCCATGCTCATAGTCCACGACACATGCAGCAATATTCGTAAGACAAGTAAAATTACAGCCAAAAATCAAAAGCACTCTTCGCCTTCTAACCAAATTGTCGCTGCCTTTGAAAAACTTGAGACCGAAAGTGAAGAAAGCAGCTTGTTCGCGGAGGCACTAACTGTTGTGTCCTCTTACGCCTCCATGCATGAGGACATTTGCAACCTTGCTGACGACAAGAGTGCAGACCTCATAATCATTCCTTTCCACAAGGAATCCACCATTGATGAGGGAATGGACAACGGAAACCCCTCTTTTAAAGGCATTAACAAGAACCTTCTAGACAACGCTTCTTGTTCGGTGGCCATCTTCGTGGATCGTGAACTCACCGATTCATCTAACATTAAAAATGAAGATGGCCATGGCTGCTGCCGTTGTGCCATGCTCTTCATTAGTGGGTCAGATGACCACGAGGCATTGGCATATGCATGGAGGATGGCCAGCAATCCTAACCCTAAACCTAATATCAGATTAACTGTGGTTCGTTTCATCATCAGTAAAGATGCGGCAGTTCATTCAGATCTCCCTCCCAACAATCCTAATAATAATGATCACGATCATGATGAGGACGAAAAGAAGAATATTTTAGAGGTGATAGAGGAAAATGAGAAGGAGAAACAACTAGACGACCAATATATAGAGAGCTTTGTGCTCAATACTAGGAACCAACCTTCCATAAAATTAATTCACGAGGTGTTGAACAATGGAGAAGACACTCTCAAATTGATAAGCGCCATGGGAAATGACTATGATCTTTATATCGTGGGAAGAGGGCAAACAGGTTCCTCACCACTCACGTTCGGGCTATCCGAGTGGGGTGACTGCCTGGAGCTCGGACCCTTGGGAGATGCATTGGCATCGTCCAACATTGTGGCCAGCGCCTCGATTCTCATAGTGCATCAAGGTCGTGCTGTTGGCAAGTCCTTATTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

412

Amino Acids

45.08

Weight (kDa)

5.3

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25710 FvH4_5g31470 FvH4_7g01800
malus_domestica	MD02G1284400.v1.1 MD02G1284600.v1.1 MD02G1284900.v1.1 MD02G1285000.v1.1 MD02G1285100.v1.1 MD02G1296900.v1.1 MD07G1050200.v1.1 MD07G1050300.v1.1 MD15G1139600.v1.1
prunus_persica	Prupe.2G027500_v2.0.a1 Prupe.2G038300_v2.0.a1 Prupe.2G040900_v2.0.a1 Prupe.4G283300_v2.0.a1 Prupe.4G283400_v2.0.a1 Prupe.4G283500_v2.0.a1 Prupe.4G283500_v2.0.a1 Prupe.4G284600_v2.0.a1 Prupe.4G284900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0318411 RchiOBHm_Chr5g0030741 RchiOBHm_Chr7g0226891
rosa_laevigata	RLG00000001685 RLG00000030540 RLG00000033248
rosa_multiflora	Rmu_co8328645.1_g000001 Rmu_co8411059.1_g000001 Rmu_sc0002662.1_g000016 Rmu_sc0003238.1_g000035 Rmu_sc0003936.1_g000039 Rmu_sc0034904.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232440 Rroxscaffold_4G00329260
rosa_rugosa	Rorug01G0021100 Rorug05G0120500 Rorug07G0240000.1
rosa_samantha	Rh1AG033200 Rh1BG029000 Rh1CG031500 Rh1DG038000 Rh5AG212000 Rh5BG211100 Rh5CG234800 Rh5DG216300 Rh7AG387600 Rh7BG374100 Rh7CG407200 Rh7DG386300
rosa_wichuraiana	Rw0G000940 Rw0G000950 Rw1G002660 Rw5G019460 Rw7G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccII	CGCG	1 cut(s)	410
AciI	CCGC	4 cut(s)	29, 227, 410, 806
AclWI	GGATC	1 cut(s)	624
AcoI	YGGCCR	5 cut(s)	250, 603, 658, 738, 1173
AcyI	GRCGYC	1 cut(s)	23
AdeI	CACNNNGTG	1 cut(s)	994
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	4 cut(s)	150, 165, 371, 1000
AjnI	CCWGG	1 cut(s)	1125
AloI	GAACNNNNNNTCC	2 cut(s)	956, 988
AluBI	AGCT	4 cut(s)	244, 402, 945, 1132
AluI	AGCT	4 cut(s)	244, 402, 945, 1132
Alw21I	GWGCWC	3 cut(s)	246, 954, 1134
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	624
AoxI	GGCC	5 cut(s)	250, 603, 658, 738, 1173
ApeKI	GCWGC	6 cut(s)	79, 288, 362, 399, 666, 669
AseI	ATTAAT	1 cut(s)	983
AspLEI	GCGC	2 cut(s)	1034, 1181
AspS9I	GGNCC	3 cut(s)	35, 229, 1136
AsuHPI	GGTGA	4 cut(s)	619, 904, 1080, 1130
AsuII	TTCGAA	1 cut(s)	127
AvaII	GGWCC	3 cut(s)	35, 229, 1136
BalI	TGGCCA	5 cut(s)	252, 605, 660, 740, 1175
BanII	GRGCYC	2 cut(s)	246, 1134
BauI	CACGAG	2 cut(s)	710, 989
BbsI	GAAGAC	1 cut(s)	1017
Bbv12I	GWGCWC	3 cut(s)	246, 954, 1134
BbvI	GCAGC	6 cut(s)	91, 300, 349, 411, 653, 656
BccI	CCATC	5 cut(s)	79, 240, 614, 650, 730
BceAI	ACGGC	1 cut(s)	657
BcgI	CGANNNNNNTGC	8 cut(s)	388, 422, 464, 498, 1140, 1174, 1187, 1221
BciT130I	CCWGG	1 cut(s)	1127
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	3 cut(s)	581, 923, 960
BfoI	RGCGCY	2 cut(s)	1035, 1182
BglII	AGATCT	1 cut(s)	820
BisI	GCNGC	7 cut(s)	80, 289, 363, 400, 667, 670, 807
BlsI	GCNGC	7 cut(s)	81, 290, 364, 401, 668, 671, 808
Bme1390I	CCNGG	1 cut(s)	1127
Bme18I	GGWCC	3 cut(s)	35, 229, 1136
BmgT120I	GGNCC	3 cut(s)	35, 229, 1136
BmiI	GGNNCC	4 cut(s)	37, 965, 1084, 1138
BmrFI	CCNGG	1 cut(s)	1127
BmsI	GCATC	4 cut(s)	793, 1138, 1166, 1207
BpiI	GAAGAC	1 cut(s)	1017
BpmI	CTGGAG	1 cut(s)	1148
Bpu14I	TTCGAA	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	661, 1035, 1140
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	1127
BseDI	CCNNGG	3 cut(s)	661, 1035, 1140
BseGI	GGATG	1 cut(s)	741
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	132, 259
BseXI	GCAGC	6 cut(s)	91, 300, 349, 411, 653, 656
BsgI	GTGCAG	1 cut(s)	504
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	5 cut(s)	252, 605, 660, 740, 1175
BsiHKAI	GWGCWC	3 cut(s)	246, 954, 1134
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	374
BsnI	GGCC	5 cut(s)	252, 605, 660, 740, 1175
Bso31I	GGTCTC	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	246, 954, 1134
Bsp143I	GATC	5 cut(s)	616, 820, 850, 856, 1051
Bsp19I	CCATGG	2 cut(s)	661, 1035
BspACI	CCGC	4 cut(s)	29, 227, 410, 806
BspANI	GGCC	5 cut(s)	252, 605, 660, 740, 1175
BspCNI	CTCAG	2 cut(s)	131, 258
BspFNI	CGCG	1 cut(s)	410
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	4 cut(s)	37, 965, 1084, 1138
BspPI	GGATC	1 cut(s)	624
BspQI	GCTCTTC	1 cut(s)	692
BspT104I	TTCGAA	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	163
BssECI	CCNNGG	3 cut(s)	661, 1035, 1140
BssMI	GATC	5 cut(s)	616, 820, 850, 856, 1051
BssNI	GRCGYC	1 cut(s)	23
BssSI	CACGAG	2 cut(s)	710, 989
BssT1I	CCWWGG	3 cut(s)	661, 1035, 1140
Bst2BI	CACGAG	2 cut(s)	710, 989
Bst2UI	CCWGG	1 cut(s)	1127
Bst4CI	ACNGT	2 cut(s)	424, 778
Bst6I	CTCTTC	3 cut(s)	343, 692, 1063
BstACI	GRCGYC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	6, 742, 1177
BstDEI	CTNAG	3 cut(s)	75, 118, 245
BstDSI	CCRYGG	2 cut(s)	661, 1035
BstF5I	GGATG	1 cut(s)	741
BstFNI	CGCG	1 cut(s)	410
BstH2I	RGCGCY	2 cut(s)	1035, 1182
BstHHI	GCGC	2 cut(s)	1034, 1181
BstKTI	GATC	5 cut(s)	619, 823, 853, 859, 1054
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	5 cut(s)	616, 820, 850, 856, 1051
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 85, 102, 340, 666
BstNI	CCWGG	1 cut(s)	1127
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	1125
BstUI	CGCG	1 cut(s)	410
BstV1I	GCAGC	6 cut(s)	91, 300, 349, 411, 653, 656
BstV2I	GAAGAC	1 cut(s)	1017
BstX2I	RGATCY	1 cut(s)	820
BstXI	CCANNNNNNTGG	2 cut(s)	613, 1171
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	5 cut(s)	252, 605, 660, 740, 1175
BtgI	CCRYGG	2 cut(s)	661, 1035
BtsCI	GGATG	1 cut(s)	741
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	6, 742, 1177
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	2 cut(s)	1034, 1181
Cfr13I	GGNCC	3 cut(s)	35, 229, 1136
CseI	GACGC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	75, 118, 245
DpnI	GATC	5 cut(s)	618, 822, 852, 858, 1053
DpnII	GATC	5 cut(s)	616, 820, 850, 856, 1051
DraI	TTTAAA	1 cut(s)	559
DraIII	CACNNNGTG	1 cut(s)	994
EaeI	YGGCCR	5 cut(s)	250, 603, 658, 738, 1173
Eam1104I	CTCTTC	3 cut(s)	343, 692, 1063
EarI	CTCTTC	3 cut(s)	343, 692, 1063
Ecl136II	GAGCTC	2 cut(s)	244, 1132
Eco130I	CCWWGG	3 cut(s)	661, 1035, 1140
Eco24I	GRGCYC	2 cut(s)	246, 1134
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	3 cut(s)	35, 229, 1136
Eco53kI	GAGCTC	2 cut(s)	244, 1132
EcoICRI	GAGCTC	2 cut(s)	244, 1132
EcoRII	CCWGG	1 cut(s)	1125
EcoT14I	CCWWGG	3 cut(s)	661, 1035, 1140
EcoT22I	ATGCAT	3 cut(s)	450, 730, 1153
EcoT38I	GRGCYC	2 cut(s)	246, 1134
ErhI	CCWWGG	3 cut(s)	661, 1035, 1140
FauNDI	CATATG	1 cut(s)	724
FbaI	TGATCA	1 cut(s)	850
Fnu4HI	GCNGC	7 cut(s)	80, 289, 363, 400, 667, 670, 807
FokI	GGATG	1 cut(s)	748
FriOI	GRGCYC	2 cut(s)	246, 1134
Fsp4HI	GCNGC	7 cut(s)	80, 289, 363, 400, 667, 670, 807
FspBI	CTAG	3 cut(s)	581, 923, 960
GlaI	GCGC	2 cut(s)	1033, 1180
GluI	GCNGC	7 cut(s)	80, 289, 363, 400, 667, 670, 807
GsuI	CTGGAG	1 cut(s)	1148
HaeII	RGCGCY	2 cut(s)	1035, 1182
HaeIII	GGCC	5 cut(s)	252, 605, 660, 740, 1175
HgaI	GACGC	1 cut(s)	157
HhaI	GCGC	2 cut(s)	1034, 1181
Hin1I	GRCGYC	1 cut(s)	23
Hin6I	GCGC	2 cut(s)	1032, 1179
HinP1I	GCGC	2 cut(s)	1032, 1179
HinfI	GANTC	4 cut(s)	129, 515, 632, 1186
HphI	GGTGA	4 cut(s)	619, 904, 1080, 1130
Hpy166II	GTNNAC	2 cut(s)	277, 623
Hpy188I	TCNGA	6 cut(s)	121, 703, 770, 820, 1111, 1136
Hpy188III	TCNNGA	5 cut(s)	581, 620, 854, 860, 989
Hpy8I	GTNNAC	2 cut(s)	277, 623
HpyAV	CCTTC	4 cut(s)	354, 587, 904, 981
HpyCH4III	ACNGT	2 cut(s)	424, 778
HpyCH4IV	ACGT	2 cut(s)	23, 1097
HpyCH4V	TGCA	8 cut(s)	8, 288, 448, 462, 485, 728, 1151, 1198
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 85, 102, 340, 666
HpyF3I	CTNAG	3 cut(s)	75, 118, 245
HpySE526I	ACGT	2 cut(s)	23, 1097
Hsp92I	GRCGYC	1 cut(s)	23
HspAI	GCGC	2 cut(s)	1032, 1179
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	616, 820, 850, 856, 1051
LguI	GCTCTTC	1 cut(s)	692
LmnI	GCTCC	2 cut(s)	241, 1129
LpnPI	CCDG	6 cut(s)	221, 754, 1065, 1112, 1139, 1189
Lsp1109I	GCAGC	6 cut(s)	91, 300, 349, 411, 653, 656
LweI	GCATC	4 cut(s)	793, 1138, 1166, 1207
MaeI	CTAG	3 cut(s)	581, 923, 960
MaeII	ACGT	2 cut(s)	23, 1097
MaeIII	GTNAC	1 cut(s)	1118
MalI	GATC	5 cut(s)	618, 822, 852, 858, 1053
MboI	GATC	5 cut(s)	616, 820, 850, 856, 1051
MboII	GAAGA	8 cut(s)	330, 404, 601, 665, 679, 889, 1022, 1080
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	3 cut(s)	246, 954, 1134
MlsI	TGGCCA	5 cut(s)	252, 605, 660, 740, 1175
MluCI	AATT	6 cut(s)	9, 312, 354, 980, 984, 1022
MluNI	TGGCCA	5 cut(s)	252, 605, 660, 740, 1175
MmeI	TCCRAC	3 cut(s)	13, 162, 1188
Mox20I	TGGCCA	5 cut(s)	252, 605, 660, 740, 1175
Mph1103I	ATGCAT	3 cut(s)	450, 730, 1153
MscI	TGGCCA	5 cut(s)	252, 605, 660, 740, 1175
MseI	TTAA	5 cut(s)	558, 567, 645, 773, 983
MslI	CAYNNNNRTG	3 cut(s)	611, 727, 858
Msp20I	TGGCCA	5 cut(s)	252, 605, 660, 740, 1175
MspA1I	CMGCKG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	1127
MvaI	CCWGG	1 cut(s)	1127
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	5 cut(s)	76, 85, 102, 340, 666
NcoI	CCATGG	2 cut(s)	661, 1035
NdeI	CATATG	1 cut(s)	724
NdeII	GATC	5 cut(s)	616, 820, 850, 856, 1051
NlaIV	GGNNCC	4 cut(s)	37, 965, 1084, 1138
NmuCI	GTSAC	1 cut(s)	1118
NsiI	ATGCAT	3 cut(s)	450, 730, 1153
NspI	RCATGY	1 cut(s)	288
NspV	TTCGAA	1 cut(s)	127
PagI	TCATGA	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	692
PcsI	WCGNNNNNNNCGW	1 cut(s)	1107
PfeI	GAWTC	4 cut(s)	129, 515, 632, 1186
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	7 cut(s)	81, 290, 364, 401, 668, 671, 808
PshBI	ATTAAT	1 cut(s)	983
Psp124BI	GAGCTC	2 cut(s)	246, 1134
Psp6I	CCWGG	1 cut(s)	1125
PspGI	CCWGG	1 cut(s)	1125
PspN4I	GGNNCC	4 cut(s)	37, 965, 1084, 1138
PspPI	GGNCC	3 cut(s)	35, 229, 1136
PsuI	RGATCY	1 cut(s)	820
RseI	CAYNNNNRTG	3 cut(s)	611, 727, 858
SacI	GAGCTC	2 cut(s)	246, 1134
SapI	GCTCTTC	1 cut(s)	692
SaqAI	TTAA	5 cut(s)	558, 567, 645, 773, 983
SatI	GCNGC	7 cut(s)	80, 289, 363, 400, 667, 670, 807
Sau3AI	GATC	5 cut(s)	616, 820, 850, 856, 1051
Sau96I	GGNCC	3 cut(s)	35, 229, 1136
ScrFI	CCNGG	1 cut(s)	1127
SduI	GDGCHC	3 cut(s)	246, 954, 1134
SfaNI	GCATC	4 cut(s)	793, 1138, 1166, 1207
SfuI	TTCGAA	1 cut(s)	127
SinI	GGWCC	3 cut(s)	35, 229, 1136
SmiMI	CAYNNNNRTG	3 cut(s)	611, 727, 858
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	9, 312, 354, 980, 984, 1022
SsiI	CCGC	4 cut(s)	29, 227, 410, 806
SspI	AATATT	2 cut(s)	295, 883
SspMI	CTAG	3 cut(s)	581, 923, 960
SstI	GAGCTC	2 cut(s)	246, 1134
StyD4I	CCNGG	1 cut(s)	1125
StyI	CCWWGG	3 cut(s)	661, 1035, 1140
TaaI	ACNGT	2 cut(s)	424, 778
TaiI	ACGT	2 cut(s)	26, 1100
TaqI	TCGA	3 cut(s)	62, 127, 1184
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	6 cut(s)	9, 312, 354, 980, 984, 1022
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	4 cut(s)	129, 515, 632, 1186
Tru1I	TTAA	5 cut(s)	558, 567, 645, 773, 983
Tru9I	TTAA	5 cut(s)	558, 567, 645, 773, 983
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	1118
TseI	GCWGC	6 cut(s)	79, 288, 362, 399, 666, 669
Tsp45I	GTSAC	1 cut(s)	1118
TspDTI	ATGAA	5 cut(s)	624, 666, 679, 778, 803
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	3 cut(s)	35, 229, 1136
VspI	ATTAAT	1 cut(s)	983
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	1 cut(s)	288
XspI	CTAG	3 cut(s)	581, 923, 960
ZraI	GACGTC	1 cut(s)	24
Zsp2I	ATGCAT	3 cut(s)	450, 730, 1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.