Rroxscaffold_4G00329260

Cation H( ) antiporter

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
62511016 .. 62514898
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329260.1

Sequence Viewer

Length: 2625 bp
ATGGCCAAAACGACATTCAATATCATATCTAGAAACAAAACCTCTTTCAATGTGTGTTATAACAAAACAGAAACCCGTAACATCGGGCTATGGAGTGCAGAAAACCCCTTGGTAGCATCTCTCCCAATGTTCATCATCCAACTGCTCGCCGTCTTGTTGCTCGGTCACATTCTTGCCTACCTCCTCAAACCCTTGCGCCAACCACGCATTGTTTCTAATATTCTTGCTGGCGTTTTATTAGGTCCATCTGTGTTTGCTATCACGAGAATCGTGGGAGTTTCCATACTTCCTTTCGATAGCATAATGACCTTGGAGACTCTGGCAAACTTGGGGCTCGTGTACCACATTTTCCTCATTGGGTTAGAGTTTGAATTCAGACCAGTAGTACGTGCAGGGACAAAGGCTCTCAGCATTGCCCTCGCCGGCGTGGTCTTTGCCATCCCCGCCGGGTGGGCATTGCATACCTATGTACTCTTCCGCGACTTTGAAACCGTGAAAGCCAAAAGCAATATGAAAAATGTAGCGTACGGCCCCATCTTCTGGGGCATTGTCCTCTCCAGCACCAACTTCGTTGATCTCACCCAAATTCTTGCCGACTTCAAGCTTCTCCACTCGGAGGTGGGACGACTAGCCTTATCCGGTGCCATTATCTCCGATGTGGTGTCATGGTTTCTTTTTCTTGTGGTAATGGCCATACTCGGTTATGGTAAATTGTATACGGTGTTGTTAACGATAGGCTTCATTGCATTCAGTATTTTTTTACTTCGGCCAGCTCTCGCCTGGGTAATGTGCCACACCACTAAGGAAGACGGCTATAGTGATGTCCAAATATGCTTCATTCTGTTTGGGATTGTATTGAGTGGATTAATAACCGATGCCTGCGGGGGACACTCCGTCGTCGGACCTTTCATGTTGGGAGCAATTATGCCCAGGGGGATACACTTCAAACAAATGTTTGCAGATCGTGTTGGAAAATTTGTGGAAAGCCTGATGATGCCCCTCTTTTACTTGGTCATTGGGGCGAGATTCCATTCTTTTTGGCTACTCGGTGATCTAAATAACAATCTGCAAGCTGAATCTACCGTGCCTCAGCTTGTTGGGGTGATCATCCTGGCTTTCACAGCTAAGAGTGTCGGCACTTTCATCGCTGCTCTACTCAACAAAATGACACCTCGAGATAGTTTAGTTCTGGGAATCCTTATGAACACTAAAGGCTTATTGGCACTCCTTATACTCACCTCCGCTCGTGACCTAAAGGCTTTGGACACCCAAACATATGGAGTAATGTTGGTTGCAGTTTGGGCAATGACGGTTCCTGTTGGACCCTTCCTAGCCCTCATTTGCAAGTCCACCAAGAGTTCTACACAACATAAACAGAGAAGCATACAAAGTGTAGGAGTTGAAACAGAGCTTCGAATCCTTGCATGCACCCATACTGCGAGCAACGCATCAGGCATCATTAGCCTCATTGACGCTTCCAATCCATCCAGCAAATCCCCAATTCATGTCTTTGCTGTCAAACTGGTGGAACTTACTGACCATAATGCTGCTATGCTCATCGTGCATGATGCTTGCAACAAAACTGGAGCAGATGGCAACGACGACTTGAGCTCCAATGCATTTCAGAACTATGCAAGGCAAAGAGAAAATGTCTCCGTTCAATCACTCACCGCAGTGTCTGCCTACGCCACTATGCACGAGGATATATGCAACATGGCTGACGAGAAGCACGTTAACTTCATAATCCTCCCGTTCCGTATGCCAACTACTATTGATGGAGTCCCAGATGATCGTTATGATCCTCTTCTCACGGAAATTAGTAAGAAGGTCATGGAAAATGCAAAGTGCTCTGTAGGTCTTTTGGTGGATTGTGGGCTTGTCACATTCCATAACGCTTCTTTGGAGTCCCAAAACTTCGTCATGTTTTTCATTGGAGGGCCAGATGATCGAGAGGCACTAGCGTACGCATGGAGGATGGCTAGGCATCCTAGGGTAAACTTAAAAGTTATACGGTTCACCCTCAGTAAACAAGCAGGGGAGGTGAGTTATCATCACGATGTTGATGAGGAATACAAGACAAATGAAAACATTAGGCAGCAGAAACAACTAGACGACGCATGCATAGATGAGTTCAAACTTACGTCCATGAATGAACCCTCCATAGATCTGTATGAGAAGCTGGTGAATAATTTGGAAGACATTATCAATATAGTAAGCACCATGAAAGGTCAATATCAGCTGTACATAGTGGGAAGAGGTCATGATGGTTGCTCCCCAATAACAGCACCGTTGTTCGAATGCAACAAGACCAATAAGCTCGGAACTTGGGGGAAACATTGGCATCTTCAAGCGTCATGGCGATGGCAAGAATACCAAGCTGGGAGGGTACTCTCCAGCCAGCCTCAACCAGAGAGAGAGAGAGGGAGGGGGTTGAGGGCTGTGGGTAACCCAATGAGTGTTTTTGCCATGCCAAAAGTGGGCGAGGGTGGTGGAATGCATCCAAACTGGCAATGCATAGCTGCATACCTTAATCACACACATCTGTCTCAATATGGTAAAATAGTAGAGAGACACAAAGCCAGGGCACTATTCAGCAAACTCAGTCTGCAACCCACAAAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

874

Amino Acids

96.72

Weight (kDa)

8.65

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 55 - 443 7e-49 Sodium/hydrogen exchanger, transmembrane
CHX17_2nd PF23256 503 - 627 1.8e-09 Plant cation/H(+) antiporter domain
CHX17_C PF23259 641 - 756 6.5e-07 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 641
AccB7I CCANNNNNTGG 1 cut(s) 540
AccBSI CCGCTC 1 cut(s) 1244
AccI GTMKAC 1 cut(s) 716
AccII CGCG 1 cut(s) 480
AciI CCGC 5 cut(s) 444, 478, 882, 1242, 1671
AclWI GGATC 1 cut(s) 1793
AcoI YGGCCR 3 cut(s) 3, 690, 767
AcsI RAATTY 3 cut(s) 371, 585, 974
AfaI GTAC 7 cut(s) 341, 387, 471, 527, 1964, 2243, 2388
AfiI CCNNNNNNNGG 4 cut(s) 450, 540, 616, 2477
AhdI GACNNNNNGTC 1 cut(s) 893
AjnI CCWGG 4 cut(s) 779, 929, 1110, 2579
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 1673
Alw21I GWGCWC 2 cut(s) 1613, 1850
Alw26I GTCTC 4 cut(s) 308, 1657, 2550, 2563
AlwI GGATC 1 cut(s) 1793
AlwNI CAGNNNCTG 1 cut(s) 1679
Ama87I CYCGRG 1 cut(s) 1173
AoxI GGCC 5 cut(s) 3, 529, 690, 767, 1937
ApeKI GCWGC 4 cut(s) 1148, 1547, 2095, 2519
ApoI RAATTY 3 cut(s) 371, 585, 974
AseI ATTAAT 1 cut(s) 866
AspA2I CCTAGG 1 cut(s) 1988
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 5 cut(s) 242, 530, 902, 1322, 1937
AsuC2I CCSGG 1 cut(s) 448
AsuHPI GGTGA 8 cut(s) 571, 1061, 1114, 1228, 1660, 2008, 2053, 2194
AsuII TTCGAA 2 cut(s) 1414, 2295
AvaI CYCGRG 1 cut(s) 1173
AvaII GGWCC 3 cut(s) 242, 902, 1322
AvrII CCTAGG 1 cut(s) 1988
BaeGI GKGCMC 1 cut(s) 2587
BalI TGGCCA 2 cut(s) 5, 692
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 2 cut(s) 336, 1613
BauI CACGAG 4 cut(s) 262, 335, 1245, 1697
BbsI GAAGAC 2 cut(s) 813, 2202
Bbv12I GWGCWC 2 cut(s) 1613, 1850
BbvCI CCTCAGC 1 cut(s) 1089
BbvI GCAGC 4 cut(s) 1135, 1534, 2107, 2506
BccI CCATC 9 cut(s) 253, 446, 542, 1492, 1586, 1769, 1969, 2258, 2355
BceAI ACGGC 3 cut(s) 134, 544, 826
BcgI CGANNNNNNTGC 6 cut(s) 400, 434, 550, 584, 1126, 1160
BciT130I CCWGG 4 cut(s) 781, 931, 1112, 2581
BciVI GTATCC 1 cut(s) 930
BclI TGATCA 1 cut(s) 1104
BcnI CCSGG 1 cut(s) 448
BcoDI GTCTC 4 cut(s) 308, 1657, 2550, 2563
BfaI CTAG 7 cut(s) 30, 629, 1331, 1958, 1980, 1989, 2108
BfmI CTRYAG 3 cut(s) 814, 1851, 2621
BfuI GTATCC 1 cut(s) 930
BglI GCCNNNNNGGC 1 cut(s) 452
BglII AGATCT 1 cut(s) 2164
BisI GCNGC 4 cut(s) 1149, 1548, 2096, 2520
BlnI CCTAGG 1 cut(s) 1988
BlsI GCNGC 4 cut(s) 1150, 1549, 2097, 2521
Bme1390I CCNGG 5 cut(s) 448, 781, 931, 1112, 2581
Bme18I GGWCC 3 cut(s) 242, 902, 1322
BmeRI GACNNNNNGTC 1 cut(s) 893
BmeT110I CYCGRG 1 cut(s) 1173
BmgT120I GGNCC 5 cut(s) 242, 530, 902, 1322, 1937
BmiI GGNNCC 4 cut(s) 532, 643, 1314, 1324
BmrFI CCNGG 5 cut(s) 448, 781, 931, 1112, 2581
BmsI GCATC 9 cut(s) 125, 865, 984, 1457, 1464, 1558, 1993, 2350, 2506
BpiI GAAGAC 2 cut(s) 813, 2202
BpmI CTGGAG 3 cut(s) 541, 1605, 2377
Bpu10I CCTNAGC 1 cut(s) 1089
Bpu14I TTCGAA 2 cut(s) 1414, 2295
BpuEI CTTGAG 1 cut(s) 1627
BpuMI CCSGG 1 cut(s) 448
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 7 cut(s) 108, 309, 780, 929, 930, 1988, 2580
BsaWI WCCGGW 1 cut(s) 638
BsaXI ACNNNNNCTCC 2 cut(s) 1595, 1625
Bsc4I CCNNNNNNNGG 4 cut(s) 450, 540, 616, 2477
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 4 cut(s) 380, 1527, 1588, 2510
Bse3DI GCAATG 5 cut(s) 411, 455, 741, 1311, 2516
BseBI CCWGG 4 cut(s) 781, 931, 1112, 2581
BseDI CCNNGG 7 cut(s) 108, 309, 780, 929, 930, 1988, 2580
BseGI GGATG 7 cut(s) 135, 438, 1107, 1484, 1980, 1984, 2497
BseLI CCNNNNNNNGG 4 cut(s) 450, 540, 616, 2477
BseMI GCAATG 5 cut(s) 411, 455, 741, 1311, 2516
BseMII CTCAG 4 cut(s) 421, 1103, 2035, 2614
BseNI ACTGG 4 cut(s) 380, 1527, 1588, 2510
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 2587
BseXI GCAGC 4 cut(s) 1135, 1534, 2107, 2506
BseYI CCCAGC 1 cut(s) 2378
BsgI GTGCAG 2 cut(s) 117, 411
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 5 cut(s) 5, 531, 692, 769, 1939
BshNI GGYRCC 1 cut(s) 641
BsiHKAI GWGCWC 2 cut(s) 1613, 1850
BsiHKCI CYCGRG 1 cut(s) 1173
BsiSI CCGG 3 cut(s) 423, 447, 639
BsiWI CGTACG 2 cut(s) 525, 1962
BslFI GGGAC 5 cut(s) 409, 636, 900, 1766, 1891
BslI CCNNNNNNNGG 4 cut(s) 450, 540, 616, 2477
BsmAI GTCTC 4 cut(s) 308, 1657, 2550, 2563
BsmFI GGGAC 5 cut(s) 409, 636, 900, 1766, 1891
BsmI GAATGC 3 cut(s) 746, 2303, 2499
BsnI GGCC 5 cut(s) 5, 531, 692, 769, 1939
BsoBI CYCGRG 1 cut(s) 1173
Bsp119I TTCGAA 2 cut(s) 1414, 2295
Bsp1286I GDGCHC 4 cut(s) 336, 1613, 1850, 2587
Bsp1407I TGTACA 1 cut(s) 2241
Bsp143I GATC 8 cut(s) 574, 961, 1051, 1104, 1789, 1798, 1945, 2164
BspACI CCGC 5 cut(s) 444, 478, 882, 1242, 1671
BspANI GGCC 5 cut(s) 5, 531, 692, 769, 1939
BspCNI CTCAG 4 cut(s) 420, 1102, 2034, 2613
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 2260
BspLI GGNNCC 4 cut(s) 532, 643, 1314, 1324
BspPI GGATC 1 cut(s) 1793
BspT104I TTCGAA 2 cut(s) 1414, 2295
BspT107I GGYRCC 1 cut(s) 641
BsrBI CCGCTC 1 cut(s) 1244
BsrDI GCAATG 5 cut(s) 411, 455, 741, 1311, 2516
BsrFI RCCGGY 1 cut(s) 422
BsrGI TGTACA 1 cut(s) 2241
BsrI ACTGG 4 cut(s) 380, 1527, 1588, 2510
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 7 cut(s) 108, 309, 780, 929, 930, 1988, 2580
BssMI GATC 8 cut(s) 574, 961, 1051, 1104, 1789, 1798, 1945, 2164
BssNAI GTATAC 1 cut(s) 717
BssSI CACGAG 4 cut(s) 262, 335, 1245, 1697
BssT1I CCWWGG 3 cut(s) 108, 309, 1988
Bst1107I GTATAC 1 cut(s) 717
Bst2BI CACGAG 4 cut(s) 262, 335, 1245, 1697
Bst2UI CCWGG 4 cut(s) 781, 931, 1112, 2581
Bst4CI ACNGT 6 cut(s) 493, 721, 1084, 1312, 2013, 2289
Bst6I CTCTTC 3 cut(s) 479, 1809, 2248
BstAPI GCANNNNNTGC 1 cut(s) 1679
BstAUI TGTACA 1 cut(s) 2241
BstBAI YACGTR 1 cut(s) 389
BstBI TTCGAA 2 cut(s) 1414, 2295
BstDEI CTNAG 6 cut(s) 407, 801, 1089, 1125, 2021, 2600
BstEII GGTNACC 1 cut(s) 2444
BstF5I GGATG 7 cut(s) 135, 438, 1107, 1484, 1980, 1984, 2497
BstFNI CGCG 1 cut(s) 480
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 8 cut(s) 577, 964, 1054, 1107, 1792, 1801, 1948, 2167
BstMAI GTCTC 4 cut(s) 308, 1657, 2550, 2563
BstMBI GATC 8 cut(s) 574, 961, 1051, 1104, 1789, 1798, 1945, 2164
BstMWI GCNNNNNNNGC 9 cut(s) 204, 443, 452, 1121, 1301, 1445, 1461, 1561, 1679
BstNI CCWGG 4 cut(s) 781, 931, 1112, 2581
BstNSI RCATGY 2 cut(s) 1428, 2121
BstPI GGTNACC 1 cut(s) 2444
BstSCI CCNGG 5 cut(s) 446, 779, 929, 1110, 2579
BstSFI CTRYAG 3 cut(s) 814, 1851, 2621
BstSLI GKGCMC 1 cut(s) 2587
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 4 cut(s) 1135, 1534, 2107, 2506
BstV2I GAAGAC 2 cut(s) 813, 2202
BstX2I RGATCY 1 cut(s) 2164
BstXI CCANNNNNNTGG 1 cut(s) 1277
BstYI RGATCY 1 cut(s) 2164
BstZ17I GTATAC 1 cut(s) 717
BsuI GTATCC 1 cut(s) 930
BsuRI GGCC 5 cut(s) 5, 531, 692, 769, 1939
BtgZI GCGATG 2 cut(s) 1129, 2374
BtsCI GGATG 7 cut(s) 135, 438, 1107, 1484, 1980, 1984, 2497
BtsI GCAGTG 1 cut(s) 1680
BtsIMutI CAGTG 1 cut(s) 1680
CaiI CAGNNNCTG 1 cut(s) 1679
CciI TCATGA 1 cut(s) 2260
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 5 cut(s) 242, 530, 902, 1322, 1937
CseI GACGC 3 cut(s) 1481, 2123, 2340
Csp6I GTAC 7 cut(s) 340, 386, 470, 526, 1963, 2242, 2387
CviQI GTAC 7 cut(s) 340, 386, 470, 526, 1963, 2242, 2387
DdeI CTNAG 6 cut(s) 407, 801, 1089, 1125, 2021, 2600
DpnI GATC 8 cut(s) 576, 963, 1053, 1106, 1791, 1800, 1947, 2166
DpnII GATC 8 cut(s) 574, 961, 1051, 1104, 1789, 1798, 1945, 2164
DriI GACNNNNNGTC 1 cut(s) 893
EaeI YGGCCR 3 cut(s) 3, 690, 767
Eam1104I CTCTTC 3 cut(s) 479, 1809, 2248
Eam1105I GACNNNNNGTC 1 cut(s) 893
EarI CTCTTC 3 cut(s) 479, 1809, 2248
Ecl136II GAGCTC 1 cut(s) 1611
Eco130I CCWWGG 3 cut(s) 108, 309, 1988
Eco24I GRGCYC 2 cut(s) 336, 1613
Eco47I GGWCC 3 cut(s) 242, 902, 1322
Eco53kI GAGCTC 1 cut(s) 1611
Eco88I CYCGRG 1 cut(s) 1173
Eco91I GGTNACC 1 cut(s) 2444
EcoICRI GAGCTC 1 cut(s) 1611
EcoO65I GGTNACC 1 cut(s) 2444
EcoRI GAATTC 1 cut(s) 371
EcoRII CCWGG 4 cut(s) 779, 929, 1110, 2579
EcoT14I CCWWGG 3 cut(s) 108, 309, 1988
EcoT22I ATGCAT 4 cut(s) 1621, 2123, 2499, 2516
EcoT38I GRGCYC 2 cut(s) 336, 1613
ErhI CCWWGG 3 cut(s) 108, 309, 1988
FaqI GGGAC 5 cut(s) 409, 636, 900, 1766, 1891
FauI CCCGC 2 cut(s) 451, 875
FauNDI CATATG 1 cut(s) 1276
FbaI TGATCA 1 cut(s) 1104
FblI GTMKAC 1 cut(s) 716
Fnu4HI GCNGC 4 cut(s) 1149, 1548, 2096, 2520
FokI GGATG 7 cut(s) 122, 425, 1094, 1471, 1971, 1987, 2484
FriOI GRGCYC 2 cut(s) 336, 1613
Fsp4HI GCNGC 4 cut(s) 1149, 1548, 2096, 2520
FspBI CTAG 7 cut(s) 30, 629, 1331, 1958, 1980, 1989, 2108
GlaI GCGC 1 cut(s) 197
GluI GCNGC 4 cut(s) 1149, 1548, 2096, 2520
GsaI CCCAGC 1 cut(s) 2382
GsuI CTGGAG 3 cut(s) 541, 1605, 2377
HaeIII GGCC 5 cut(s) 5, 531, 692, 769, 1939
HapII CCGG 3 cut(s) 423, 447, 639
HgaI GACGC 3 cut(s) 1481, 2123, 2340
HhaI GCGC 1 cut(s) 198
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 2 cut(s) 729, 1735
HindII GTYRAC 2 cut(s) 729, 1735
HindIII AAGCTT 1 cut(s) 602
HinfI GANTC 8 cut(s) 267, 316, 1026, 1076, 1194, 1416, 1779, 1904
HpaI GTTAAC 2 cut(s) 729, 1735
HpaII CCGG 3 cut(s) 423, 447, 639
HphI GGTGA 8 cut(s) 571, 1061, 1114, 1228, 1660, 2008, 2053, 2194
Hpy166II GTNNAC 8 cut(s) 340, 717, 729, 1350, 1735, 1996, 2016, 2027
Hpy188I TCNGA 6 cut(s) 377, 616, 655, 902, 1626, 2321
Hpy188III TCNNGA 7 cut(s) 30, 262, 1175, 1247, 1949, 2054, 2261
Hpy8I GTNNAC 8 cut(s) 340, 717, 729, 1350, 1735, 1996, 2016, 2027
Hpy99I CGWCG 4 cut(s) 899, 902, 1604, 2117
HpyAV CCTTC 2 cut(s) 1336, 1819
HpyCH4III ACNGT 6 cut(s) 493, 721, 1084, 1312, 2013, 2289
HpyCH4IV ACGT 3 cut(s) 388, 1731, 2141
HpyF10VI GCNNNNNNNGC 9 cut(s) 204, 443, 452, 1121, 1301, 1445, 1461, 1561, 1679
HpyF3I CTNAG 6 cut(s) 407, 801, 1089, 1125, 2021, 2600
HpySE526I ACGT 3 cut(s) 388, 1731, 2141
HspAI GCGC 1 cut(s) 196
KroI GCCGGC 1 cut(s) 422
KroNI GCCGGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 1104
KspAI GTTAAC 2 cut(s) 729, 1735
Kzo9I GATC 8 cut(s) 574, 961, 1051, 1104, 1789, 1798, 1945, 2164
LmnI GCTCC 4 cut(s) 917, 1586, 1616, 2276
Lsp1109I GCAGC 4 cut(s) 1135, 1534, 2107, 2506
LweI GCATC 9 cut(s) 125, 865, 984, 1457, 1464, 1558, 1993, 2350, 2506
MaeI CTAG 7 cut(s) 30, 629, 1331, 1958, 1980, 1989, 2108
MaeII ACGT 3 cut(s) 388, 1731, 2141
MaeIII GTNAC 5 cut(s) 77, 164, 1247, 1879, 2444
MalI GATC 8 cut(s) 576, 963, 1053, 1106, 1791, 1800, 1947, 2166
MbiI CCGCTC 1 cut(s) 1244
MboI GATC 8 cut(s) 574, 961, 1051, 1104, 1789, 1798, 1945, 2164
MboII GAAGA 7 cut(s) 466, 529, 818, 1796, 2207, 2265, 2336
MflI RGATCY 1 cut(s) 2164
MhlI GDGCHC 4 cut(s) 336, 1613, 1850, 2587
MlsI TGGCCA 2 cut(s) 5, 692
MluCI AATT 8 cut(s) 371, 585, 710, 921, 974, 1500, 1815, 2188
MluNI TGGCCA 2 cut(s) 5, 692
MlyI GAGTC 3 cut(s) 310, 1788, 1913
MmeI TCCRAC 4 cut(s) 163, 880, 949, 1300
Mox20I TGGCCA 2 cut(s) 5, 692
Mph1103I ATGCAT 4 cut(s) 1621, 2123, 2499, 2516
MreI CGCCGGCG 1 cut(s) 422
MroNI GCCGGC 1 cut(s) 422
MscI TGGCCA 2 cut(s) 5, 692
MseI TTAA 5 cut(s) 728, 866, 1734, 2000, 2529
MslI CAYNNNNRTG 4 cut(s) 465, 1673, 2055, 2359
Msp20I TGGCCA 2 cut(s) 5, 692
MspA1I CMGCKG 1 cut(s) 2239
MspI CCGG 3 cut(s) 423, 447, 639
MspR9I CCNGG 5 cut(s) 448, 781, 931, 1112, 2581
Mva1269I GAATGC 3 cut(s) 746, 2303, 2499
MvaI CCWGG 4 cut(s) 781, 931, 1112, 2581
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 9 cut(s) 204, 443, 452, 1121, 1301, 1445, 1461, 1561, 1679
NaeI GCCGGC 1 cut(s) 424
NciI CCSGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 1276
NdeII GATC 8 cut(s) 574, 961, 1051, 1104, 1789, 1798, 1945, 2164
NgoMIV GCCGGC 1 cut(s) 422
NlaIV GGNNCC 4 cut(s) 532, 643, 1314, 1324
NmuCI GTSAC 3 cut(s) 164, 1247, 1879
NsiI ATGCAT 4 cut(s) 1621, 2123, 2499, 2516
NspI RCATGY 2 cut(s) 1428, 2121
NspV TTCGAA 2 cut(s) 1414, 2295
OliI CACNNNNGTG 1 cut(s) 1673
PaeI GCATGC 2 cut(s) 1428, 2121
PaeR7I CTCGAG 1 cut(s) 1173
PagI TCATGA 1 cut(s) 2260
PasI CCCWGGG 1 cut(s) 930
PcsI WCGNNNNNNNCGW 1 cut(s) 1728
PctI GAATGC 3 cut(s) 746, 2303, 2499
PdiI GCCGGC 1 cut(s) 424
PfeI GAWTC 5 cut(s) 267, 1026, 1076, 1194, 1416
Pfl23II CGTACG 2 cut(s) 525, 1962
PflMI CCANNNNNTGG 1 cut(s) 540
PkrI GCNGC 4 cut(s) 1150, 1549, 2097, 2521
PleI GAGTC 3 cut(s) 310, 1787, 1912
PpsI GAGTC 3 cut(s) 310, 1787, 1912
Ppu21I YACGTR 1 cut(s) 389
PshBI ATTAAT 1 cut(s) 866
PsiI TTATAA 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 1613
Psp6I CCWGG 4 cut(s) 779, 929, 1110, 2579
PspEI GGTNACC 1 cut(s) 2444
PspFI CCCAGC 1 cut(s) 2378
PspGI CCWGG 4 cut(s) 779, 929, 1110, 2579
PspLI CGTACG 2 cut(s) 525, 1962
PspN4I GGNNCC 4 cut(s) 532, 643, 1314, 1324
PspPI GGNCC 5 cut(s) 242, 530, 902, 1322, 1937
PstNI CAGNNNCTG 1 cut(s) 1679
PsuI RGATCY 1 cut(s) 2164
PvuII CAGCTG 1 cut(s) 2239
RsaI GTAC 7 cut(s) 341, 387, 471, 527, 1964, 2243, 2388
RsaNI GTAC 7 cut(s) 340, 386, 470, 526, 1963, 2242, 2387
RseI CAYNNNNRTG 4 cut(s) 465, 1673, 2055, 2359
SacI GAGCTC 1 cut(s) 1613
SaqAI TTAA 5 cut(s) 728, 866, 1734, 2000, 2529
SatI GCNGC 4 cut(s) 1149, 1548, 2096, 2520
Sau3AI GATC 8 cut(s) 574, 961, 1051, 1104, 1789, 1798, 1945, 2164
Sau96I GGNCC 5 cut(s) 242, 530, 902, 1322, 1937
SchI GAGTC 3 cut(s) 310, 1788, 1913
ScrFI CCNGG 5 cut(s) 448, 781, 931, 1112, 2581
SduI GDGCHC 4 cut(s) 336, 1613, 1850, 2587
SfaNI GCATC 9 cut(s) 125, 865, 984, 1457, 1464, 1558, 1993, 2350, 2506
SfcI CTRYAG 3 cut(s) 814, 1851, 2621
Sfr274I CTCGAG 1 cut(s) 1173
SfuI TTCGAA 2 cut(s) 1414, 2295
SgrAI CRCCGGYG 1 cut(s) 422
SinI GGWCC 3 cut(s) 242, 902, 1322
SlaI CTCGAG 1 cut(s) 1173
SmiMI CAYNNNNRTG 4 cut(s) 465, 1673, 2055, 2359
SmlI CTYRAG 2 cut(s) 1173, 1606
SmoI CTYRAG 2 cut(s) 1173, 1606
SphI GCATGC 2 cut(s) 1428, 2121
Sse9I AATT 8 cut(s) 371, 585, 710, 921, 974, 1500, 1815, 2188
SsiI CCGC 5 cut(s) 444, 478, 882, 1242, 1671
SspI AATATT 1 cut(s) 220
SspMI CTAG 7 cut(s) 30, 629, 1331, 1958, 1980, 1989, 2108
SstI GAGCTC 1 cut(s) 1613
StyD4I CCNGG 5 cut(s) 446, 779, 929, 1110, 2579
StyI CCWWGG 3 cut(s) 108, 309, 1988
TaaI ACNGT 6 cut(s) 493, 721, 1084, 1312, 2013, 2289
TaiI ACGT 3 cut(s) 391, 1734, 2144
TaqI TCGA 5 cut(s) 294, 1174, 1414, 1948, 2295
TaqII GACCGA 1 cut(s) 152
TasI AATT 8 cut(s) 371, 585, 710, 921, 974, 1500, 1815, 2188
TatI WGTACW 2 cut(s) 469, 2241
TfiI GAWTC 5 cut(s) 267, 1026, 1076, 1194, 1416
Tru1I TTAA 5 cut(s) 728, 866, 1734, 2000, 2529
Tru9I TTAA 5 cut(s) 728, 866, 1734, 2000, 2529
TscAI CASTG 1 cut(s) 1680
TseFI GTSAC 3 cut(s) 164, 1247, 1879
TseI GCWGC 4 cut(s) 1148, 1547, 2095, 2519
Tsp45I GTSAC 3 cut(s) 164, 1247, 1879
TspGWI ACGGA 4 cut(s) 883, 1645, 1745, 1826
TspRI CASTG 1 cut(s) 1680
Van91I CCANNNNNTGG 1 cut(s) 540
VpaK11BI GGWCC 3 cut(s) 242, 902, 1322
VspI ATTAAT 1 cut(s) 866
XapI RAATTY 3 cut(s) 371, 585, 974
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 2 cut(s) 1428, 2121
XcmI CCANNNNNNNNNTGG 2 cut(s) 777, 2473
XhoI CTCGAG 1 cut(s) 1173
XmaJI CCTAGG 1 cut(s) 1988
XmiI GTMKAC 1 cut(s) 716
XspI CTAG 7 cut(s) 30, 629, 1331, 1958, 1980, 1989, 2108
Zsp2I ATGCAT 4 cut(s) 1621, 2123, 2499, 2516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.