Rmu_co8411059.1_g000001

Cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8411059.1
OG0001291
Physical Location & Seq
Forward (+)
1 .. 1340
1340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8411059.1_g000001.1.cds

Sequence Viewer

Length: 1206 bp
accttggaccagaaaacattcccagcaatgatcttagtggtttgggcactgatgattccgatcggaccattcctagcctacagttacaagaccaccaagcatttcgggcaatacaaatataggaacatacgaagcataggatccgacacagagcttcgcatccttgcatgcacccacgactcacgcaactcacccgccgtcatcaatcttcttgaagcttccaatccaaccagacagtccccgatccaagtcttcgctgtccagcttgttgaaatgattggccacacttccgccatgctcattgtccatgatgcttgcaaaaccaacgatgaagggagcaagcacaaggccggacaaatatcctcatccttgccctccaatccctttgaactctacgcaaaggaaagagagaatgtcagtgtccaggcactcaccatcgtctcggcctacgccacaatgcatgaggacatatgcaactttgcggaggacaagtgcattacccttgtgatggtcccgttccatcaacaatccaccctagacggaaacatggaggagtccaaccctgctctcagggcagtcaatagaaatgtcattgataacgcaccatgctcagtgggtgttcttgtggaccgtgggctcggtatatcccagatcttcaagtccaacatcagcagccatattagctccgatgacgtgagctaccaccgctttgctgtatttttcattggaggggcagatgaccgtgaggcattagcgtatgcaaaaaggatggctgggcattccagggttgacctaacagttgttcggttcatcttaaatacagaggcatgcttagatgatgctgactgcgacaacgaaattatagaggcaatggcaaacactgggaagcaaaaacagcttgatgacttgtacctggatggttttagggtccatacaatgcacaattcctccataaagttggtagaggaggtggtgaatagctgggaagaaactctggacgccataaacgacttggagggtgattatgatttgtacataatgggaagacgacatggaagcagcagcacgttggcagtgacatcagcattggacagcagcgactgtgatgagctaggtactctggcagaggcgttagtgtcttctagcttttttaaggttaacacatctattctcatagtgcagcaaggtgctgctgtagaggaaata
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

402

Amino Acids

44.28

Weight (kDa)

4.95

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 195, 291, 482, 706
AclWI GGATC 3 cut(s) 135, 148, 238
AcoI YGGCCR 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 999
AfaI GTAC 3 cut(s) 911, 1034, 1117
AfiI CCNNNNNNNGG 1 cut(s) 508
AgsI TTSAA 4 cut(s) 215, 272, 389, 658
AjiI CACGTC 1 cut(s) 694
AjnI CCWGG 3 cut(s) 423, 782, 912
AluBI AGCT 9 cut(s) 154, 218, 265, 684, 699, 898, 981, 1111, 1146
AluI AGCT 9 cut(s) 154, 218, 265, 684, 699, 898, 981, 1111, 1146
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 3 cut(s) 135, 148, 238
AlwNI CAGNNNCTG 1 cut(s) 1101
AoxI GGCC 3 cut(s) 280, 348, 444
ApeKI GCWGC 6 cut(s) 672, 1059, 1062, 1095, 1180, 1190
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 5 cut(s) 7, 65, 511, 628, 928
AsuHPI GGTGA 4 cut(s) 183, 424, 985, 1031
AvaII GGWCC 5 cut(s) 7, 65, 511, 628, 928
BaeGI GKGCMC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 282
BamHI GGATCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 639
BbsI GAAGAC 3 cut(s) 244, 1051, 1131
BbvI GCAGC 6 cut(s) 684, 1071, 1074, 1107, 1177, 1192
BccI CCATC 5 cut(s) 443, 502, 528, 763, 911
BceAI ACGGC 1 cut(s) 182
BciT130I CCWGG 3 cut(s) 425, 784, 914
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 4 cut(s) 74, 536, 1112, 1143
BfmI CTRYAG 2 cut(s) 79, 1194
BglII AGATCT 1 cut(s) 651
BisI GCNGC 6 cut(s) 673, 1060, 1063, 1096, 1181, 1191
BlsI GCNGC 6 cut(s) 674, 1061, 1064, 1097, 1182, 1192
Bme1390I CCNGG 3 cut(s) 425, 784, 914
Bme18I GGWCC 5 cut(s) 7, 65, 511, 628, 928
BmgBI CACGTC 1 cut(s) 694
BmgT120I GGNCC 5 cut(s) 7, 65, 511, 628, 928
BmiI GGNNCC 3 cut(s) 142, 513, 929
BmrFI CCNGG 3 cut(s) 425, 784, 914
BmrI ACTGGG 1 cut(s) 891
BmsI GCATC 3 cut(s) 168, 301, 829
BmuI ACTGGG 1 cut(s) 891
BpiI GAAGAC 3 cut(s) 244, 1051, 1131
BsaBI GATNNNNATC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 999
BsaJI CCNNGG 3 cut(s) 3, 631, 783
BsaXI ACNNNNNCTCC 4 cut(s) 476, 506, 932, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 508
Bse1I ACTGG 1 cut(s) 886
Bse3DI GCAATG 2 cut(s) 33, 876
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 3 cut(s) 425, 784, 914
BseDI CCNNGG 3 cut(s) 3, 631, 783
BseGI GGATG 4 cut(s) 159, 365, 774, 922
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 508
BseMI GCAATG 2 cut(s) 33, 876
BseMII CTCAG 2 cut(s) 583, 624
BseNI ACTGG 1 cut(s) 886
BseRI GAGGAG 2 cut(s) 566, 980
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 6 cut(s) 684, 1071, 1074, 1107, 1177, 1192
BseYI CCCAGC 3 cut(s) 22, 773, 981
BsgI GTGCAG 1 cut(s) 1199
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 3 cut(s) 282, 350, 446
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 2 cut(s) 223, 497
BslI CCNNNNNNNGG 1 cut(s) 508
BsmAI GTCTC 1 cut(s) 445
BsmBI CGTCTC 1 cut(s) 445
BsmFI GGGAC 2 cut(s) 223, 497
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 3 cut(s) 282, 350, 446
Bsp1286I GDGCHC 2 cut(s) 49, 639
Bsp1407I TGTACA 1 cut(s) 1032
Bsp143I GATC 5 cut(s) 30, 60, 140, 243, 651
BspACI CCGC 4 cut(s) 195, 291, 482, 706
BspANI GGCC 3 cut(s) 282, 350, 446
BspCNI CTCAG 2 cut(s) 582, 623
BspLI GGNNCC 3 cut(s) 142, 513, 929
BspPI GGATC 3 cut(s) 135, 148, 238
BsrDI GCAATG 2 cut(s) 33, 876
BsrGI TGTACA 1 cut(s) 1032
BsrI ACTGG 1 cut(s) 886
BssECI CCNNGG 3 cut(s) 3, 631, 783
BssMI GATC 5 cut(s) 30, 60, 140, 243, 651
BssNI GRCGYC 1 cut(s) 999
BssT1I CCWWGG 1 cut(s) 3
Bst2UI CCWGG 3 cut(s) 425, 784, 914
Bst4CI ACNGT 6 cut(s) 83, 237, 632, 743, 799, 1103
BstACI GRCGYC 1 cut(s) 999
BstAUI TGTACA 1 cut(s) 1032
BstC8I GCNNGC 4 cut(s) 169, 316, 341, 829
BstDEI CTNAG 4 cut(s) 34, 569, 610, 832
BstDSI CCRYGG 1 cut(s) 631
BstF5I GGATG 4 cut(s) 159, 365, 774, 922
BstKTI GATC 5 cut(s) 33, 63, 143, 246, 654
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 5 cut(s) 30, 60, 140, 243, 651
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 5 cut(s) 106, 572, 681, 705, 895
BstNI CCWGG 3 cut(s) 425, 784, 914
BstNSI RCATGY 2 cut(s) 171, 831
BstSCI CCNGG 3 cut(s) 423, 782, 912
BstSFI CTRYAG 2 cut(s) 79, 1194
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 6 cut(s) 684, 1071, 1074, 1107, 1177, 1192
BstV2I GAAGAC 3 cut(s) 244, 1051, 1131
BstX2I RGATCY 2 cut(s) 140, 651
BstXI CCANNNNNNTGG 1 cut(s) 958
BstYI RGATCY 2 cut(s) 140, 651
BsuRI GGCC 3 cut(s) 282, 350, 446
BtgI CCRYGG 1 cut(s) 631
BtrI CACGTC 1 cut(s) 694
BtsCI GGATG 4 cut(s) 159, 365, 774, 922
BtsI GCAGTG 1 cut(s) 1080
BtsIMutI CAGTG 5 cut(s) 47, 424, 618, 879, 1080
Cac8I GCNNGC 4 cut(s) 169, 316, 341, 829
CaiI CAGNNNCTG 1 cut(s) 1101
Cfr13I GGNCC 5 cut(s) 7, 65, 511, 628, 928
CseI GACGC 1 cut(s) 1007
Csp6I GTAC 3 cut(s) 910, 1033, 1116
CviAII CATG 8 cut(s) 168, 295, 308, 461, 547, 606, 828, 1052
CviQI GTAC 3 cut(s) 910, 1033, 1116
DdeI CTNAG 4 cut(s) 34, 569, 610, 832
DpnI GATC 5 cut(s) 32, 62, 142, 245, 653
DpnII GATC 5 cut(s) 30, 60, 140, 243, 651
EaeI YGGCCR 1 cut(s) 280
EciI GGCGGA 1 cut(s) 280
Eco130I CCWWGG 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 639
Eco47I GGWCC 5 cut(s) 7, 65, 511, 628, 928
EcoRII CCWGG 3 cut(s) 423, 782, 912
EcoT14I CCWWGG 1 cut(s) 3
EcoT22I ATGCAT 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 3
Esp3I CGTCTC 1 cut(s) 445
FaeI CATG 8 cut(s) 171, 298, 311, 464, 550, 609, 831, 1055
FaqI GGGAC 2 cut(s) 223, 497
FatI CATG 8 cut(s) 167, 294, 307, 460, 546, 605, 827, 1051
FauI CCCGC 1 cut(s) 202
FauNDI CATATG 1 cut(s) 470
Fnu4HI GCNGC 6 cut(s) 673, 1060, 1063, 1096, 1181, 1191
FokI GGATG 4 cut(s) 146, 352, 781, 929
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 6 cut(s) 673, 1060, 1063, 1096, 1181, 1191
FspBI CTAG 4 cut(s) 74, 536, 1112, 1143
GluI GCNGC 6 cut(s) 673, 1060, 1063, 1096, 1181, 1191
GsaI CCCAGC 3 cut(s) 26, 777, 985
HaeIII GGCC 3 cut(s) 282, 350, 446
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 1007
Hin1I GRCGYC 1 cut(s) 999
Hin1II CATG 8 cut(s) 171, 298, 311, 464, 550, 609, 831, 1055
HincII GTYRAC 2 cut(s) 790, 1159
HindII GTYRAC 2 cut(s) 790, 1159
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 3 cut(s) 55, 179, 554
HpaI GTTAAC 1 cut(s) 1159
HpaII CCGG 1 cut(s) 351
HphI GGTGA 4 cut(s) 183, 424, 985, 1031
Hpy166II GTNNAC 3 cut(s) 628, 790, 1159
Hpy188I TCNGA 4 cut(s) 60, 65, 145, 688
Hpy188III TCNNGA 2 cut(s) 212, 995
Hpy8I GTNNAC 3 cut(s) 628, 790, 1159
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 6 cut(s) 83, 237, 632, 743, 799, 1103
HpyCH4IV ACGT 2 cut(s) 693, 1067
HpyCH4V TGCA 9 cut(s) 167, 171, 318, 460, 474, 495, 761, 940, 1180
HpyF10VI GCNNNNNNNGC 5 cut(s) 106, 572, 681, 705, 895
HpyF3I CTNAG 4 cut(s) 34, 569, 610, 832
HpySE526I ACGT 2 cut(s) 693, 1067
Hsp92I GRCGYC 1 cut(s) 999
Hsp92II CATG 8 cut(s) 171, 298, 311, 464, 550, 609, 831, 1055
KspAI GTTAAC 1 cut(s) 1159
Kzo9I GATC 5 cut(s) 30, 60, 140, 243, 651
LmnI GCTCC 2 cut(s) 336, 689
Lsp1109I GCAGC 6 cut(s) 684, 1071, 1074, 1107, 1177, 1192
LweI GCATC 3 cut(s) 168, 301, 829
MaeI CTAG 4 cut(s) 74, 536, 1112, 1143
MaeII ACGT 2 cut(s) 693, 1067
MaeIII GTNAC 2 cut(s) 83, 1075
MalI GATC 5 cut(s) 32, 62, 142, 245, 653
MboI GATC 5 cut(s) 30, 60, 140, 243, 651
MboII GAAGA 6 cut(s) 200, 244, 646, 998, 1056, 1131
MflI RGATCY 2 cut(s) 140, 651
MhlI GDGCHC 2 cut(s) 49, 639
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 2 cut(s) 858, 943
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 2 cut(s) 173, 563
MmeI TCCRAC 4 cut(s) 168, 251, 582, 687
Mox20I TGGCCA 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 462
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 282
MseI TTAA 3 cut(s) 815, 1152, 1158
Msp20I TGGCCA 1 cut(s) 282
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 3 cut(s) 425, 784, 914
Mva1269I GAATGC 1 cut(s) 778
MvaI CCWGG 3 cut(s) 425, 784, 914
MwoI GCNNNNNNNGC 5 cut(s) 106, 572, 681, 705, 895
NdeI CATATG 1 cut(s) 470
NdeII GATC 5 cut(s) 30, 60, 140, 243, 651
NlaIII CATG 8 cut(s) 171, 298, 311, 464, 550, 609, 831, 1055
NlaIV GGNNCC 3 cut(s) 142, 513, 929
NmeAIII GCCGAG 1 cut(s) 422
NmuCI GTSAC 1 cut(s) 1075
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 2 cut(s) 171, 831
PaeI GCATGC 2 cut(s) 171, 831
PcsI WCGNNNNNNNCGW 1 cut(s) 1005
PctI GAATGC 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 6 cut(s) 674, 1061, 1064, 1097, 1182, 1192
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 2 cut(s) 173, 562
PpsI GAGTC 2 cut(s) 173, 562
Psp6I CCWGG 3 cut(s) 423, 782, 912
PspFI CCCAGC 3 cut(s) 22, 773, 981
PspGI CCWGG 3 cut(s) 423, 782, 912
PspN4I GGNNCC 3 cut(s) 142, 513, 929
PspPI GGNCC 5 cut(s) 7, 65, 511, 628, 928
PstNI CAGNNNCTG 1 cut(s) 1101
PsuI RGATCY 2 cut(s) 140, 651
PvuI CGATCG 1 cut(s) 63
RsaI GTAC 3 cut(s) 911, 1034, 1117
RsaNI GTAC 3 cut(s) 910, 1033, 1116
SaqAI TTAA 3 cut(s) 815, 1152, 1158
SatI GCNGC 6 cut(s) 673, 1060, 1063, 1096, 1181, 1191
Sau3AI GATC 5 cut(s) 30, 60, 140, 243, 651
Sau96I GGNCC 5 cut(s) 7, 65, 511, 628, 928
SchI GAGTC 2 cut(s) 173, 563
ScrFI CCNGG 3 cut(s) 425, 784, 914
SduI GDGCHC 2 cut(s) 49, 639
SfaNI GCATC 3 cut(s) 168, 301, 829
SfcI CTRYAG 2 cut(s) 79, 1194
SinI GGWCC 5 cut(s) 7, 65, 511, 628, 928
SphI GCATGC 2 cut(s) 171, 831
Sse9I AATT 2 cut(s) 858, 943
SsiI CCGC 4 cut(s) 195, 291, 482, 706
SspMI CTAG 4 cut(s) 74, 536, 1112, 1143
StyD4I CCNGG 3 cut(s) 423, 782, 912
StyI CCWWGG 1 cut(s) 3
TaaI ACNGT 6 cut(s) 83, 237, 632, 743, 799, 1103
TaiI ACGT 2 cut(s) 696, 1070
TasI AATT 2 cut(s) 858, 943
TatI WGTACW 1 cut(s) 1032
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 815, 1152, 1158
Tru9I TTAA 3 cut(s) 815, 1152, 1158
TscAI CASTG 5 cut(s) 54, 424, 618, 886, 1080
TseFI GTSAC 1 cut(s) 1075
TseI GCWGC 6 cut(s) 672, 1059, 1062, 1095, 1180, 1190
Tsp45I GTSAC 1 cut(s) 1075
TspDTI ATGAA 3 cut(s) 345, 712, 799
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 5 cut(s) 54, 424, 618, 886, 1080
VpaK11BI GGWCC 5 cut(s) 7, 65, 511, 628, 928
XceI RCATGY 2 cut(s) 171, 831
XcmI CCANNNNNNNNNTGG 1 cut(s) 1009
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 4 cut(s) 74, 536, 1112, 1143
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.