Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001291

Physical Location & Seq

Genomic Coordinates Reverse (-)

24372796 .. 24375239

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G283500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTTAACATCATTATGTTTATATGCCACCTTCTCAAGCTTCTCCTTGCACCTTTGCACCAACCTCGCGTCGTTGCTTGCATTATTGCTACCACTTATGGTCCTTTCTTCGGGGGCATCACCCTTACCACCACCAACTTCGCCGAACTTGCCCGAGTACTTGCCAATGCCAAGCTACTGCACAGTGACGTTGGCCGGACCGCCCTCTCCGTAAGCGTCATCAACGACCTTATGTCTTCAGTTCTTCTTGTCATCACGGTGGCCACAATCAGCGATGGCAAACTTTACACAGTGTTGTCCACTTTCACATTGATCATATTCTGTGTATACGGGCTTCGTCCAGCGCTGTCGTGGATGGTTCGCAACACGAGCTTTTTTGAAGAAAAGTACGACATGGACAGCCAAATATGCTTTATCATGGCCGGGGTTCTACTGTTTGGGTTCATTAGTGATGCGTTCGGGTCACACTCCATTCTTGGGGCCTTCATGTTGGGAGCCATTTTGCCCAAGGGAGAGCTCAAAACTGCAATCACCGAAAAGGTTGAGGACTTTGTGTCAAAAATCTTGTTGCCCCTCTTCTTTTTGATTCTTGGGATGAGAACGCATGTCGTTGTTGTCTTTCGCAGTACAAGCCTGCTAATTGTCATGTCAATTGTTGCCCTGGCTTTCCTCGCTAAATTTGTTGTGACTTTCGTCGCTGCCATCATCAACAAAATGTCGGTGAGGGACAGTTTGGCTTTCGGACTAGTCATGAACACCAAAGGCGTGCTGGCTATAATAATCCTCAATTCTGGGCGGGACTTACATCTCAATATTCGCACTTATCTCAGTTATTTTACAACACGTTATCAGCACGAGAAGCTCTCAGGTATAATTTTTGTGCTACACTATTATTTATACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

302

Amino Acids

33.45

Weight (kDa)

9.25

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25710 FvH4_5g31470 FvH4_7g01800
malus_domestica	MD02G1284400.v1.1 MD02G1284600.v1.1 MD02G1284900.v1.1 MD02G1285000.v1.1 MD02G1285100.v1.1 MD02G1296900.v1.1 MD07G1050200.v1.1 MD07G1050300.v1.1 MD15G1139600.v1.1
prunus_persica	Prupe.2G027500_v2.0.a1 Prupe.2G038300_v2.0.a1 Prupe.2G040900_v2.0.a1 Prupe.4G283300_v2.0.a1 Prupe.4G283400_v2.0.a1 Prupe.4G283500_v2.0.a1 Prupe.4G283500_v2.0.a1 Prupe.4G284600_v2.0.a1 Prupe.4G284900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0318411 RchiOBHm_Chr5g0030741 RchiOBHm_Chr7g0226891
rosa_laevigata	RLG00000001685 RLG00000030540 RLG00000033248
rosa_multiflora	Rmu_co8328645.1_g000001 Rmu_co8411059.1_g000001 Rmu_sc0002662.1_g000016 Rmu_sc0003238.1_g000035 Rmu_sc0003936.1_g000039 Rmu_sc0034904.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232440 Rroxscaffold_4G00329260
rosa_rugosa	Rorug01G0021100 Rorug05G0120500 Rorug07G0240000.1
rosa_samantha	Rh1AG033200 Rh1BG029000 Rh1CG031500 Rh1DG038000 Rh5AG212000 Rh5BG211100 Rh5CG234800 Rh5DG216300 Rh7AG387600 Rh7BG374100 Rh7CG407200 Rh7DG386300
rosa_wichuraiana	Rw0G000940 Rw0G000950 Rw1G002660 Rw5G019460 Rw7G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	69
AciI	CCGC	2 cut(s)	201, 796
AcoI	YGGCCR	3 cut(s)	193, 261, 420
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	3 cut(s)	159, 389, 628
AfeI	AGCGCT	1 cut(s)	345
AfiI	CCNNNNNNNGG	2 cut(s)	110, 477
AflIII	ACRYGT	1 cut(s)	842
AgsI	TTSAA	1 cut(s)	380
AhdI	GACNNNNNGTC	2 cut(s)	232, 553
AhlI	ACTAGT	1 cut(s)	745
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	5 cut(s)	40, 175, 372, 517, 862
AluI	AGCT	5 cut(s)	40, 175, 372, 517, 862
Alw21I	GWGCWC	1 cut(s)	519
Ama87I	CYCGRG	1 cut(s)	153
Aor51HI	AGCGCT	1 cut(s)	345
AoxI	GGCC	4 cut(s)	193, 261, 420, 480
ApeKI	GCWGC	1 cut(s)	698
ApoI	RAATTY	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	346
AspS9I	GGNCC	3 cut(s)	101, 198, 480
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	3 cut(s)	112, 523, 733
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	2 cut(s)	101, 198
BalI	TGGCCA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	318, 350
BauI	CACGAG	2 cut(s)	367, 854
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	685
BccI	CCATC	3 cut(s)	269, 349, 710
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	662
BclI	TGATCA	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	424
BcuI	ACTAGT	1 cut(s)	745
BfaI	CTAG	1 cut(s)	746
BfoI	RGCGCY	1 cut(s)	347
BisI	GCNGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	700
BmcAI	AGTACT	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	424, 662
Bme18I	GGWCC	2 cut(s)	101, 198
BmeRI	GACNNNNNGTC	2 cut(s)	232, 553
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	3 cut(s)	101, 198, 480
BmiI	GGNNCC	2 cut(s)	481, 496
BmrFI	CCNGG	2 cut(s)	424, 662
BmsI	GCATC	2 cut(s)	126, 442
BoxI	GACNNNNGTC	1 cut(s)	692
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
BpuEI	CTTGAG	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	424
BsaJI	CCNNGG	3 cut(s)	423, 507, 660
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 477
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	3 cut(s)	423, 507, 660
BseGI	GGATG	2 cut(s)	360, 600
BseLI	CCNNNNNNNGG	2 cut(s)	110, 477
BseMII	CTCAG	2 cut(s)	841, 879
BseXI	GCAGC	1 cut(s)	685
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	195, 263, 422, 482
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	196, 423
BslFI	GGGAC	2 cut(s)	740, 812
BslI	CCNNNNNNNGG	2 cut(s)	110, 477
BsmFI	GGGAC	2 cut(s)	740, 812
BsnI	GGCC	4 cut(s)	195, 263, 422, 482
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	519
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	201, 796
BspANI	GGCC	4 cut(s)	195, 263, 422, 482
BspCNI	CTCAG	2 cut(s)	840, 878
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	2 cut(s)	481, 496
BssECI	CCNNGG	3 cut(s)	423, 507, 660
BssMI	GATC	1 cut(s)	312
BssNAI	GTATAC	1 cut(s)	328
BssSI	CACGAG	2 cut(s)	367, 854
BssT1I	CCWWGG	1 cut(s)	507
Bst1107I	GTATAC	1 cut(s)	328
Bst2BI	CACGAG	2 cut(s)	367, 854
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	5 cut(s)	185, 259, 292, 435, 731
Bst6I	CTCTTC	1 cut(s)	581
BstC8I	GCNNGC	4 cut(s)	79, 635, 767, 771
BstDEI	CTNAG	2 cut(s)	827, 865
BstF5I	GGATG	2 cut(s)	360, 600
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	346
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 369, 408, 630, 671, 859
BstNI	CCWGG	1 cut(s)	662
BstNSI	RCATGY	1 cut(s)	608
BstPAI	GACNNNNGTC	1 cut(s)	692
BstSCI	CCNGG	2 cut(s)	422, 660
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	685
BstV2I	GAAGAC	1 cut(s)	228
BstZ17I	GTATAC	1 cut(s)	328
BsuRI	GGCC	4 cut(s)	195, 263, 422, 482
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	360, 600
BtsIMutI	CAGTG	2 cut(s)	190, 297
Cac8I	GCNNGC	4 cut(s)	79, 635, 767, 771
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	1 cut(s)	346
Cfr13I	GGNCC	3 cut(s)	101, 198, 480
CpoI	CGGWCCG	1 cut(s)	198
CseI	GACGC	2 cut(s)	58, 205
Csp6I	GTAC	3 cut(s)	158, 388, 627
CspI	CGGWCCG	1 cut(s)	198
CviAII	CATG	6 cut(s)	394, 418, 487, 605, 646, 751
CviQI	GTAC	3 cut(s)	158, 388, 627
DdeI	CTNAG	2 cut(s)	827, 865
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DriI	GACNNNNNGTC	2 cut(s)	232, 553
EaeI	YGGCCR	3 cut(s)	193, 261, 420
Eam1104I	CTCTTC	1 cut(s)	581
Eam1105I	GACNNNNNGTC	2 cut(s)	232, 553
EarI	CTCTTC	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	2 cut(s)	101, 198
Eco47III	AGCGCT	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	517
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	517
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	660
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	519
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	6 cut(s)	397, 421, 490, 608, 649, 754
FaqI	GGGAC	2 cut(s)	740, 812
FatI	CATG	6 cut(s)	393, 417, 486, 604, 645, 750
FauI	CCCGC	1 cut(s)	789
FbaI	TGATCA	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	699
FokI	GGATG	2 cut(s)	367, 607
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	1 cut(s)	699
FspBI	CTAG	1 cut(s)	746
GlaI	GCGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	347
HaeIII	GGCC	4 cut(s)	195, 263, 422, 482
HapII	CCGG	2 cut(s)	196, 423
HgaI	GACGC	2 cut(s)	58, 205
HhaI	GCGC	1 cut(s)	346
Hin1II	CATG	6 cut(s)	397, 421, 490, 608, 649, 754
Hin6I	GCGC	1 cut(s)	344
HinP1I	GCGC	1 cut(s)	344
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	586
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	2 cut(s)	196, 423
HphI	GGTGA	3 cut(s)	112, 523, 733
Hpy166II	GTNNAC	3 cut(s)	7, 300, 328
Hpy188I	TCNGA	1 cut(s)	743
Hpy188III	TCNNGA	1 cut(s)	751
Hpy8I	GTNNAC	3 cut(s)	7, 300, 328
Hpy99I	CGWCG	2 cut(s)	74, 698
HpyAV	CCTTC	2 cut(s)	41, 493
HpyCH4III	ACNGT	5 cut(s)	185, 259, 292, 435, 731
HpyCH4IV	ACGT	2 cut(s)	189, 844
HpyCH4V	TGCA	5 cut(s)	50, 58, 81, 181, 527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 369, 408, 630, 671, 859
HpyF3I	CTNAG	2 cut(s)	827, 865
HpySE526I	ACGT	2 cut(s)	189, 844
Hsp92II	CATG	6 cut(s)	397, 421, 490, 608, 649, 754
HspAI	GCGC	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	312
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	494
LpnPI	CCDG	9 cut(s)	209, 354, 436, 647, 647, 674, 755, 777, 852
Lsp1109I	GCAGC	1 cut(s)	685
LweI	GCATC	2 cut(s)	126, 442
MaeI	CTAG	1 cut(s)	746
MaeII	ACGT	2 cut(s)	189, 844
MaeIII	GTNAC	3 cut(s)	185, 462, 685
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	5 cut(s)	100, 228, 236, 392, 568
MfeI	CAATTG	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	519
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	5 cut(s)	639, 651, 677, 787, 873
MluNI	TGGCCA	1 cut(s)	263
MnlI	CCTC	7 cut(s)	75, 215, 538, 584, 680, 717, 794
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	14, 257
Msp20I	TGGCCA	1 cut(s)	263
MspI	CCGG	2 cut(s)	196, 423
MspR9I	CCNGG	2 cut(s)	424, 662
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	662
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	6 cut(s)	149, 369, 408, 630, 671, 859
NciI	CCSGG	1 cut(s)	424
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	6 cut(s)	397, 421, 490, 608, 649, 754
NlaIV	GGNNCC	2 cut(s)	481, 496
NmuCI	GTSAC	3 cut(s)	185, 462, 685
NspI	RCATGY	1 cut(s)	608
PagI	TCATGA	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	700
PshAI	GACNNNNGTC	1 cut(s)	692
Psp124BI	GAGCTC	1 cut(s)	519
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	2 cut(s)	481, 496
PspPI	GGNCC	3 cut(s)	101, 198, 480
RsaI	GTAC	3 cut(s)	159, 389, 628
RsaNI	GTAC	3 cut(s)	158, 388, 627
RseI	CAYNNNNRTG	2 cut(s)	14, 257
Rsr2I	CGGWCCG	1 cut(s)	198
RsrII	CGGWCCG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	519
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	699
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	3 cut(s)	101, 198, 480
ScaI	AGTACT	1 cut(s)	159
ScrFI	CCNGG	2 cut(s)	424, 662
SduI	GDGCHC	1 cut(s)	519
SfaNI	GCATC	2 cut(s)	126, 442
SinI	GGWCC	2 cut(s)	101, 198
SmiMI	CAYNNNNRTG	2 cut(s)	14, 257
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	745
Sse9I	AATT	5 cut(s)	639, 651, 677, 787, 873
SsiI	CCGC	2 cut(s)	201, 796
SspI	AATATT	1 cut(s)	814
SspMI	CTAG	1 cut(s)	746
SstI	GAGCTC	1 cut(s)	519
StyD4I	CCNGG	2 cut(s)	422, 660
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	5 cut(s)	185, 259, 292, 435, 731
TaiI	ACGT	2 cut(s)	192, 847
TasI	AATT	5 cut(s)	639, 651, 677, 787, 873
TatI	WGTACW	2 cut(s)	157, 626
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	190, 297
TseFI	GTSAC	3 cut(s)	185, 462, 685
TseI	GCWGC	1 cut(s)	698
Tsp45I	GTSAC	3 cut(s)	185, 462, 685
TspDTI	ATGAA	3 cut(s)	433, 475, 767
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	190, 297
VpaK11BI	GGWCC	2 cut(s)	101, 198
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	608
XcmI	CCANNNNNNNNNTGG	2 cut(s)	348, 766
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	1 cut(s)	746
ZrmI	AGTACT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.