RchiOBHm_Chr5g0030741

Cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001291
Physical Location & Seq
Reverse (-)
24359477 .. 24361449
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31006

Sequence Viewer

Length: 1404 bp
ATGTCGGAGATATCTCCAACGTTGAGAGCAAACAGTACAGCTGATCAAGTTGAAAACTTGGGATTTGCTCTTCCTTATAACAACAGAACCTATACAGTGGTATGTTATAATCTATTTGTTAGGAAATCAAGTAAGCAACTACAACATTTGAGACTTCCCACGGACTTGATTCTCCCTGTCTTCTTAGTCCAAATGGTGAGCATCATGTTCGTTTCTAGCATTCTCGTGCTTGCCCTCAAACGCTTCCACCAACCACGTATTGTCGCTGAAATTCTTGCTGGCTTTCTCTTGGGGCCAACTCTTTTGGGGGAAATTTTGAATAGATTACACATGTTTACCTCTTTTGCTCCATTTGAAAGCGTGCTGAGCTTAGAAACTATAGGAAACCTGGGCCTAGTTTACTACATGTTTCTGGTGGGATTAGAACTTGAACTAAAGCCGGTAATCCGTGCCGGGAAGAAGGCTCTTAGCATTGCCCTCGTAGGCATGGTGGTGGCCATCGCCAGTGGTTGGGGCTTGTTTTTTGTCCTTGACGACAACATCAAGCCTAATCTTAAGTTTCTGAATGCCCCAAATCAGCGAGACAACACACACTCAGGCCACTTGTTCTGGGCACTCGCCCTCGGCACCACAAGCTTCCCAGACGTGGCTCGACTCCTCGCAGATCTTAAGCTCCTCCACTCCGAGCTTGGACGACTTGCATTGTCATCTGCTGTCATCTCCGACCTGTGCTCGTGGTTCCTTTTCATCTTGCTACTAGCACTAACCAATCTGACGGGCCGCTTTTTGGTGGTGGGACTGACTACCCTGGCCTTCGTATGGTTTTGTGTTTTTGTACTCCGCCCGGCTCTTCCAAAGCTGATCCGCTTCGTATCGAAAAACAAAGAGGACAAGAGAGACAACTACAATGAGCTCCATGTGAGCTTTGTTCTCATGGGGGTTCTGGTATGCGCCATGATAACTGATTCGTTAGGTACACTATCCTACGTTGGGGCTTTCGTGTTTGGAGCCATTATGCCGAGGGGAGAGCTCAGCAAATTGGTCGTAGAGAAGATCCAACCCTTTGTGACTGGGATTATGATGCCCCTTTTCTTCTTAATTGTCGGGCTACGAACCAACATGTGGTTTGTATTCAGTTCACATGATTCTTATACGCCCTTTCAATTCAAATATGCAAAGCGTTTCATGCTGGTTCTCTCCCTGGCTTTCTTACCTAAGATTGCCGGCAGTTTTGTTGCCGCTTTAATCCACAAAATGAAACCTTGGAATGCACTGGCTCTGGGAGTAGTCATGAACACCAGAGGCCTAATGGCACTCTTTATTCTCAGCACCGGCAGGGACCTAAAGGTACGTGTGTTTGTGGAAACAGTATATACACCCACATATATAACTTATAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

467

Amino Acids

52.27

Weight (kDa)

9.71

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 70 - 449 7.4e-50 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 78, 108, 1395, 1402
AccB1I GGYRCC 1 cut(s) 626
AccB7I CCANNNNNTGG 2 cut(s) 510, 1122
AciI CCGC 4 cut(s) 781, 841, 865, 1239
AclI AACGTT 1 cut(s) 20
AclWI GGATC 2 cut(s) 856, 1048
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 2 cut(s) 270, 312
AfaI GTAC 4 cut(s) 37, 837, 976, 1350
AfiI CCNNNNNNNGG 6 cut(s) 510, 646, 787, 819, 990, 1122
AflII CTTAAG 2 cut(s) 554, 668
AflIII ACRYGT 4 cut(s) 330, 405, 1119, 1351
AgsI TTSAA 6 cut(s) 53, 319, 356, 431, 1163, 1168
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 3 cut(s) 387, 807, 1200
AluBI AGCT 9 cut(s) 41, 369, 636, 673, 688, 859, 913, 924, 1030
AluI AGCT 9 cut(s) 41, 369, 636, 673, 688, 859, 913, 924, 1030
Alw21I GWGCWC 3 cut(s) 734, 915, 1032
Alw26I GTCTC 3 cut(s) 145, 576, 891
AlwI GGATC 2 cut(s) 856, 1048
AoxI GGCC 7 cut(s) 293, 391, 495, 598, 778, 810, 1303
ApoI RAATTY 2 cut(s) 270, 312
AspLEI GCGC 1 cut(s) 953
AspS9I GGNCC 4 cut(s) 293, 391, 778, 1339
AsuC2I CCSGG 2 cut(s) 454, 845
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 1339
BaeGI GKGCMC 1 cut(s) 616
BaeI ACNNNNGTAYC 2 cut(s) 1340, 1373
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 1 cut(s) 626
BanII GRGCYC 2 cut(s) 915, 1032
BauI CACGAG 2 cut(s) 224, 733
BbsI GAAGAC 1 cut(s) 172
Bbv12I GWGCWC 3 cut(s) 734, 915, 1032
BccI CCATC 1 cut(s) 506
BcgI CGANNNNNNTGC 6 cut(s) 190, 224, 460, 494, 1024, 1058
BciT130I CCWGG 3 cut(s) 389, 809, 1202
BclI TGATCA 1 cut(s) 43
BcnI CCSGG 2 cut(s) 454, 845
BcoDI GTCTC 3 cut(s) 145, 576, 891
BfaI CTAG 3 cut(s) 216, 395, 758
BfmI CTRYAG 1 cut(s) 378
BfrI CTTAAG 2 cut(s) 554, 668
BglII AGATCT 1 cut(s) 664
BisI GCNGC 2 cut(s) 781, 1239
BlpI GCTNAGC 2 cut(s) 365, 1031
BlsI GCNGC 2 cut(s) 782, 1240
Bme1390I CCNGG 5 cut(s) 389, 454, 809, 845, 1202
Bme18I GGWCC 1 cut(s) 1339
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 4 cut(s) 293, 391, 778, 1339
BmiI GGNNCC 5 cut(s) 294, 628, 740, 1009, 1340
BmrFI CCNGG 5 cut(s) 389, 454, 809, 845, 1202
BmrI ACTGGG 1 cut(s) 1080
BmsI GCATC 2 cut(s) 210, 1071
BmuI ACTGGG 1 cut(s) 1080
BpiI GAAGAC 1 cut(s) 172
Bpu1102I GCTNAGC 2 cut(s) 365, 1031
BpuMI CCSGG 2 cut(s) 454, 845
BsaAI YACGTR 2 cut(s) 257, 1352
BsaJI CCNNGG 7 cut(s) 159, 388, 622, 807, 1019, 1200, 1262
Bsc4I CCNNNNNNNGG 6 cut(s) 510, 646, 787, 819, 990, 1122
Bse118I RCCGGY 3 cut(s) 439, 1223, 1331
Bse1I ACTGG 3 cut(s) 504, 1075, 1278
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 3 cut(s) 389, 809, 1202
BseDI CCNNGG 7 cut(s) 159, 388, 622, 807, 1019, 1200, 1262
BseLI CCNNNNNNNGG 6 cut(s) 510, 646, 787, 819, 990, 1122
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 4 cut(s) 356, 609, 1045, 1339
BseNI ACTGG 3 cut(s) 504, 1075, 1278
BseRI GAGGAG 2 cut(s) 647, 665
BseSI GKGCMC 1 cut(s) 616
BshFI GGCC 7 cut(s) 295, 393, 497, 600, 780, 812, 1305
BshNI GGYRCC 1 cut(s) 626
BsiHKAI GWGCWC 3 cut(s) 734, 915, 1032
BsiSI CCGG 5 cut(s) 440, 453, 845, 1224, 1332
BslFI GGGAC 2 cut(s) 810, 1352
BslI CCNNNNNNNGG 6 cut(s) 510, 646, 787, 819, 990, 1122
BsmAI GTCTC 3 cut(s) 145, 576, 891
BsmFI GGGAC 2 cut(s) 810, 1352
BsmI GAATGC 3 cut(s) 219, 571, 1273
BsnI GGCC 7 cut(s) 295, 393, 497, 600, 780, 812, 1305
Bsp1286I GDGCHC 4 cut(s) 616, 734, 915, 1032
Bsp143I GATC 4 cut(s) 43, 664, 861, 1053
Bsp1720I GCTNAGC 2 cut(s) 365, 1031
BspACI CCGC 4 cut(s) 781, 841, 865, 1239
BspANI GGCC 7 cut(s) 295, 393, 497, 600, 780, 812, 1305
BspCNI CTCAG 4 cut(s) 357, 608, 1044, 1338
BspHI TCATGA 1 cut(s) 1290
BspLI GGNNCC 5 cut(s) 294, 628, 740, 1009, 1340
BspPI GGATC 2 cut(s) 856, 1048
BspQI GCTCTTC 2 cut(s) 75, 855
BspT107I GGYRCC 1 cut(s) 626
BspTI CTTAAG 2 cut(s) 554, 668
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 3 cut(s) 439, 1223, 1331
BsrI ACTGG 3 cut(s) 504, 1075, 1278
BssAI RCCGGY 3 cut(s) 439, 1223, 1331
BssECI CCNNGG 7 cut(s) 159, 388, 622, 807, 1019, 1200, 1262
BssMI GATC 4 cut(s) 43, 664, 861, 1053
BssSI CACGAG 2 cut(s) 224, 733
BssT1I CCWWGG 1 cut(s) 1262
Bst2BI CACGAG 2 cut(s) 224, 733
Bst2UI CCWGG 3 cut(s) 389, 809, 1202
Bst4CI ACNGT 3 cut(s) 35, 97, 1369
Bst6I CTCTTC 2 cut(s) 75, 855
BstAFI CTTAAG 2 cut(s) 554, 668
BstBAI YACGTR 2 cut(s) 257, 1352
BstC8I GCNNGC 4 cut(s) 231, 280, 362, 1225
BstDEI CTNAG 8 cut(s) 184, 365, 370, 467, 595, 1031, 1215, 1325
BstDSI CCRYGG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 953
BstKTI GATC 4 cut(s) 46, 667, 864, 1056
BstMAI GTCTC 3 cut(s) 145, 576, 891
BstMBI GATC 4 cut(s) 43, 664, 861, 1053
BstMWI GCNNNNNNNGC 3 cut(s) 366, 633, 1186
BstNI CCWGG 3 cut(s) 389, 809, 1202
BstNSI RCATGY 3 cut(s) 334, 409, 1123
BstSCI CCNGG 5 cut(s) 387, 452, 807, 843, 1200
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 616
BstV2I GAAGAC 1 cut(s) 172
BstX2I RGATCY 2 cut(s) 664, 1053
BstYI RGATCY 2 cut(s) 664, 1053
BsuRI GGCC 7 cut(s) 295, 393, 497, 600, 780, 812, 1305
BtgI CCRYGG 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 484
BtrI CACGTC 1 cut(s) 646
BtsIMutI CAGTG 3 cut(s) 102, 511, 1271
Cac8I GCNNGC 4 cut(s) 231, 280, 362, 1225
CciI TCATGA 1 cut(s) 1290
CfoI GCGC 1 cut(s) 953
Cfr10I RCCGGY 3 cut(s) 439, 1223, 1331
Cfr13I GGNCC 4 cut(s) 293, 391, 778, 1339
Csp6I GTAC 4 cut(s) 36, 836, 975, 1349
CviQI GTAC 4 cut(s) 36, 836, 975, 1349
DdeI CTNAG 8 cut(s) 184, 365, 370, 467, 595, 1031, 1215, 1325
DpnI GATC 4 cut(s) 45, 666, 863, 1055
DpnII GATC 4 cut(s) 43, 664, 861, 1053
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 2 cut(s) 75, 855
EarI CTCTTC 2 cut(s) 75, 855
EciI GGCGGA 1 cut(s) 830
Ecl136II GAGCTC 2 cut(s) 913, 1030
Eco130I CCWWGG 1 cut(s) 1262
Eco147I AGGCCT 1 cut(s) 1305
Eco24I GRGCYC 2 cut(s) 915, 1032
Eco32I GATATC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 1339
Eco53kI GAGCTC 2 cut(s) 913, 1030
EcoICRI GAGCTC 2 cut(s) 913, 1030
EcoO109I RGGNCCY 1 cut(s) 1339
EcoRII CCWGG 3 cut(s) 387, 807, 1200
EcoRV GATATC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 1262
EcoT38I GRGCYC 2 cut(s) 915, 1032
ErhI CCWWGG 1 cut(s) 1262
FaqI GGGAC 2 cut(s) 810, 1352
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 781, 1239
FriOI GRGCYC 2 cut(s) 915, 1032
Fsp4HI GCNGC 2 cut(s) 781, 1239
FspBI CTAG 3 cut(s) 216, 395, 758
GlaI GCGC 1 cut(s) 952
GluI GCNGC 2 cut(s) 781, 1239
HaeIII GGCC 7 cut(s) 295, 393, 497, 600, 780, 812, 1305
HapII CCGG 5 cut(s) 440, 453, 845, 1224, 1332
HhaI GCGC 1 cut(s) 953
Hin6I GCGC 1 cut(s) 951
HinP1I GCGC 1 cut(s) 951
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 4 cut(s) 169, 654, 965, 1145
HpaII CCGG 5 cut(s) 440, 453, 845, 1224, 1332
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 4 cut(s) 336, 400, 977, 1139
Hpy188I TCNGA 5 cut(s) 7, 564, 685, 724, 774
Hpy188III TCNNGA 1 cut(s) 1291
Hpy8I GTNNAC 4 cut(s) 336, 400, 977, 1139
HpyAV CCTTC 2 cut(s) 454, 823
HpyCH4III ACNGT 3 cut(s) 35, 97, 1369
HpyCH4IV ACGT 5 cut(s) 20, 256, 645, 987, 1351
HpyCH4V TGCA 3 cut(s) 701, 1175, 1271
HpyF10VI GCNNNNNNNGC 3 cut(s) 366, 633, 1186
HpyF3I CTNAG 8 cut(s) 184, 365, 370, 467, 595, 1031, 1215, 1325
HpySE526I ACGT 5 cut(s) 20, 256, 645, 987, 1351
HspAI GCGC 1 cut(s) 951
KroI GCCGGC 1 cut(s) 1223
KroNI GCCGGC 1 cut(s) 1225
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 4 cut(s) 43, 664, 861, 1053
LguI GCTCTTC 2 cut(s) 75, 855
LmnI GCTCC 4 cut(s) 352, 678, 918, 1007
LweI GCATC 2 cut(s) 210, 1071
MaeI CTAG 3 cut(s) 216, 395, 758
MaeII ACGT 5 cut(s) 20, 256, 645, 987, 1351
MaeIII GTNAC 1 cut(s) 1066
MalI GATC 4 cut(s) 45, 666, 863, 1055
MboI GATC 4 cut(s) 43, 664, 861, 1053
MboII GAAGA 6 cut(s) 62, 172, 469, 842, 1063, 1084
MflI RGATCY 2 cut(s) 664, 1053
MhlI GDGCHC 4 cut(s) 616, 734, 915, 1032
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 6 cut(s) 270, 312, 1037, 1098, 1163, 1397
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 1 cut(s) 648
MmeI TCCRAC 3 cut(s) 41, 747, 1081
MnlI CCTC 9 cut(s) 245, 349, 488, 632, 668, 686, 880, 1014, 1295
Mox20I TGGCCA 1 cut(s) 497
MroNI GCCGGC 1 cut(s) 1223
MscI TGGCCA 1 cut(s) 497
MseI TTAA 4 cut(s) 555, 669, 1097, 1244
MslI CAYNNNNRTG 2 cut(s) 224, 491
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 41
MspCI CTTAAG 2 cut(s) 554, 668
MspI CCGG 5 cut(s) 440, 453, 845, 1224, 1332
MspR9I CCNGG 5 cut(s) 389, 454, 809, 845, 1202
Mva1269I GAATGC 3 cut(s) 219, 571, 1273
MvaI CCWGG 3 cut(s) 389, 809, 1202
MwoI GCNNNNNNNGC 3 cut(s) 366, 633, 1186
NaeI GCCGGC 1 cut(s) 1225
NciI CCSGG 2 cut(s) 454, 845
NdeII GATC 4 cut(s) 43, 664, 861, 1053
NgoMIV GCCGGC 1 cut(s) 1223
NlaIV GGNNCC 5 cut(s) 294, 628, 740, 1009, 1340
NmeAIII GCCGAG 2 cut(s) 603, 1044
NmuCI GTSAC 1 cut(s) 1066
NspI RCATGY 3 cut(s) 334, 409, 1123
PagI TCATGA 1 cut(s) 1290
PceI AGGCCT 1 cut(s) 1305
PciI ACATGT 3 cut(s) 330, 405, 1119
PciSI GCTCTTC 2 cut(s) 75, 855
PctI GAATGC 3 cut(s) 219, 571, 1273
PdiI GCCGGC 1 cut(s) 1225
PfeI GAWTC 3 cut(s) 169, 965, 1145
PflMI CCANNNNNTGG 2 cut(s) 510, 1122
PkrI GCNGC 2 cut(s) 782, 1240
PleI GAGTC 1 cut(s) 648
PpsI GAGTC 1 cut(s) 648
Ppu21I YACGTR 2 cut(s) 257, 1352
PpuMI RGGWCCY 1 cut(s) 1339
PscI ACATGT 3 cut(s) 330, 405, 1119
PsiI TTATAA 4 cut(s) 78, 108, 1395, 1402
Psp124BI GAGCTC 2 cut(s) 915, 1032
Psp1406I AACGTT 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 1339
Psp6I CCWGG 3 cut(s) 387, 807, 1200
PspGI CCWGG 3 cut(s) 387, 807, 1200
PspN4I GGNNCC 5 cut(s) 294, 628, 740, 1009, 1340
PspPI GGNCC 4 cut(s) 293, 391, 778, 1339
PspPPI RGGWCCY 1 cut(s) 1339
PsuI RGATCY 2 cut(s) 664, 1053
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 4 cut(s) 37, 837, 976, 1350
RsaNI GTAC 4 cut(s) 36, 836, 975, 1349
RseI CAYNNNNRTG 2 cut(s) 224, 491
SacI GAGCTC 2 cut(s) 915, 1032
SapI GCTCTTC 2 cut(s) 75, 855
SaqAI TTAA 4 cut(s) 555, 669, 1097, 1244
SatI GCNGC 2 cut(s) 781, 1239
Sau3AI GATC 4 cut(s) 43, 664, 861, 1053
Sau96I GGNCC 4 cut(s) 293, 391, 778, 1339
SchI GAGTC 1 cut(s) 648
ScrFI CCNGG 5 cut(s) 389, 454, 809, 845, 1202
SduI GDGCHC 4 cut(s) 616, 734, 915, 1032
SfaNI GCATC 2 cut(s) 210, 1071
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 1 cut(s) 1339
SmiMI CAYNNNNRTG 2 cut(s) 224, 491
SmlI CTYRAG 2 cut(s) 554, 668
SmoI CTYRAG 2 cut(s) 554, 668
Sse9I AATT 6 cut(s) 270, 312, 1037, 1098, 1163, 1397
SseBI AGGCCT 1 cut(s) 1305
SsiI CCGC 4 cut(s) 781, 841, 865, 1239
SspMI CTAG 3 cut(s) 216, 395, 758
SstI GAGCTC 2 cut(s) 915, 1032
StuI AGGCCT 1 cut(s) 1305
StyD4I CCNGG 5 cut(s) 387, 452, 807, 843, 1200
StyI CCWWGG 1 cut(s) 1262
TaaI ACNGT 3 cut(s) 35, 97, 1369
TaiI ACGT 5 cut(s) 23, 259, 648, 990, 1354
TaqI TCGA 2 cut(s) 652, 875
TasI AATT 6 cut(s) 270, 312, 1037, 1098, 1163, 1397
TatI WGTACW 2 cut(s) 35, 835
TauI GCSGC 2 cut(s) 783, 1241
TfiI GAWTC 3 cut(s) 169, 965, 1145
Tru1I TTAA 4 cut(s) 555, 669, 1097, 1244
Tru9I TTAA 4 cut(s) 555, 669, 1097, 1244
TscAI CASTG 3 cut(s) 102, 511, 1278
TseFI GTSAC 1 cut(s) 1066
Tsp45I GTSAC 1 cut(s) 1066
TspDTI ATGAA 4 cut(s) 736, 1174, 1271, 1307
TspGWI ACGGA 2 cut(s) 176, 437
TspRI CASTG 3 cut(s) 102, 511, 1278
Van91I CCANNNNNTGG 2 cut(s) 510, 1122
Vha464I CTTAAG 2 cut(s) 554, 668
VpaK11BI GGWCC 1 cut(s) 1339
XapI RAATTY 2 cut(s) 270, 312
XceI RCATGY 3 cut(s) 334, 409, 1123
XcmI CCANNNNNNNNNTGG 2 cut(s) 686, 1306
XspI CTAG 3 cut(s) 216, 395, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.