Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8328645.1

Orthogroup ID

OG0001291

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 902

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8328645.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 901 bp

atgtttctggtgggattagaacttgaactaaagccggtaatccgtgccgggaagaaggctcttagcattgccctcgtaggcatggtggtggccatcgccagtggttggggcttgttttttgtccttgacgacaacatcaagcctaatcttaagtttctgacagccccaaatcagcgagacaacacacactcaggccacttgttctgggcactcgccctcggcaccacaagcttcccagacgtggctcgactcctcgcagatcttaagctcctccactccgagcttggacgacttgcattgtcatctgctgtcatctccgacctgtgctcgtggttccttttcatcttgctactagcactaaccaatctgacgggccgctttttggtggtgggactggctaccctggccttcgtatggttttgtgtttttgtactccgcccggctcttccaaagctgatccgcttcgtaacgaaaaacaaagaggacaagagagacaactataatgagctccatgtgagctttgttctcatgggggttctggtatgcgccatgataactgattcgttaggtacactatcctacgttggggctttcgtgtttggagccattatgccgaggggagagctcagcaaattggtcgtagagaagatccaaccctttgtgactgggattatgatgccccttttcttcttaatcgtcgggctacgaaccaacatgtggtttgtattcagttcacatgattcttatacgccctttcaattcaaatatgcaaagcgtttcatgctggttctctccctggctttcttacctaagattgccggcagttttgttgccgctttaatcaacaaaatgaaaccttggaatgcactggctctgggagtagtcatgaacaccagaggcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

300

Amino Acids

33.28

Weight (kDa)

9.82

Isoelectric Point (pI)

19.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001291)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25710 FvH4_5g31470 FvH4_7g01800
malus_domestica	MD02G1284400.v1.1 MD02G1284600.v1.1 MD02G1284900.v1.1 MD02G1285000.v1.1 MD02G1285100.v1.1 MD02G1296900.v1.1 MD07G1050200.v1.1 MD07G1050300.v1.1 MD15G1139600.v1.1
prunus_persica	Prupe.2G027500_v2.0.a1 Prupe.2G038300_v2.0.a1 Prupe.2G040900_v2.0.a1 Prupe.4G283300_v2.0.a1 Prupe.4G283400_v2.0.a1 Prupe.4G283500_v2.0.a1 Prupe.4G283500_v2.0.a1 Prupe.4G284600_v2.0.a1 Prupe.4G284900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0318411 RchiOBHm_Chr5g0030741 RchiOBHm_Chr7g0226891
rosa_laevigata	RLG00000001685 RLG00000030540 RLG00000033248
rosa_multiflora	Rmu_co8328645.1_g000001 Rmu_co8411059.1_g000001 Rmu_sc0002662.1_g000016 Rmu_sc0003238.1_g000035 Rmu_sc0003936.1_g000039 Rmu_sc0034904.1_g000001
rosa_roxburghii	Rroxscaffold_3G00232440 Rroxscaffold_4G00329260
rosa_rugosa	Rorug01G0021100 Rorug05G0120500 Rorug07G0240000.1
rosa_samantha	Rh1AG033200 Rh1BG029000 Rh1CG031500 Rh1DG038000 Rh5AG212000 Rh5BG211100 Rh5CG234800 Rh5DG216300 Rh7AG387600 Rh7BG374100 Rh7CG407200 Rh7DG386300
rosa_wichuraiana	Rw0G000940 Rw0G000950 Rw1G002660 Rw5G019460 Rw7G032560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	2 cut(s)	105, 717
AciI	CCGC	4 cut(s)	376, 436, 460, 834
AclWI	GGATC	2 cut(s)	451, 643
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	2 cut(s)	432, 571
AfiI	CCNNNNNNNGG	6 cut(s)	105, 241, 382, 414, 585, 717
AflII	CTTAAG	2 cut(s)	149, 263
AflIII	ACRYGT	1 cut(s)	714
AgsI	TTSAA	3 cut(s)	26, 758, 763
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	402, 795
AluBI	AGCT	7 cut(s)	231, 268, 283, 454, 508, 519, 625
AluI	AGCT	7 cut(s)	231, 268, 283, 454, 508, 519, 625
Alw21I	GWGCWC	3 cut(s)	329, 510, 627
Alw26I	GTCTC	2 cut(s)	171, 486
AlwI	GGATC	2 cut(s)	451, 643
AoxI	GGCC	4 cut(s)	90, 193, 373, 405
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	2 cut(s)	49, 440
BaeGI	GKGCMC	1 cut(s)	211
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	2 cut(s)	510, 627
BauI	CACGAG	1 cut(s)	328
Bbv12I	GWGCWC	3 cut(s)	329, 510, 627
BccI	CCATC	1 cut(s)	101
BcgI	CGANNNNNNTGC	4 cut(s)	55, 89, 619, 653
BciT130I	CCWGG	2 cut(s)	404, 797
BcnI	CCSGG	2 cut(s)	49, 440
BcoDI	GTCTC	2 cut(s)	171, 486
BfaI	CTAG	1 cut(s)	353
BfrI	CTTAAG	2 cut(s)	149, 263
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	2 cut(s)	376, 834
BlpI	GCTNAGC	1 cut(s)	626
BlsI	GCNGC	2 cut(s)	377, 835
Bme1390I	CCNGG	4 cut(s)	49, 404, 440, 797
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	223, 335, 604
BmrFI	CCNGG	4 cut(s)	49, 404, 440, 797
BmrI	ACTGGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	675
Bpu1102I	GCTNAGC	1 cut(s)	626
BpuMI	CCSGG	2 cut(s)	49, 440
BsaJI	CCNNGG	5 cut(s)	217, 402, 614, 795, 857
Bsc4I	CCNNNNNNNGG	6 cut(s)	105, 241, 382, 414, 585, 717
Bse118I	RCCGGY	2 cut(s)	34, 818
Bse1I	ACTGG	4 cut(s)	99, 399, 670, 873
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	404, 797
BseDI	CCNNGG	5 cut(s)	217, 402, 614, 795, 857
BseLI	CCNNNNNNNGG	6 cut(s)	105, 241, 382, 414, 585, 717
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	204, 640
BseNI	ACTGG	4 cut(s)	99, 399, 670, 873
BseRI	GAGGAG	2 cut(s)	242, 260
BseSI	GKGCMC	1 cut(s)	211
BshFI	GGCC	5 cut(s)	92, 195, 375, 407, 900
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	3 cut(s)	329, 510, 627
BsiSI	CCGG	4 cut(s)	35, 48, 440, 819
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	6 cut(s)	105, 241, 382, 414, 585, 717
BsmAI	GTCTC	2 cut(s)	171, 486
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	5 cut(s)	92, 195, 375, 407, 900
Bsp1286I	GDGCHC	4 cut(s)	211, 329, 510, 627
Bsp143I	GATC	3 cut(s)	259, 456, 648
Bsp1720I	GCTNAGC	1 cut(s)	626
BspACI	CCGC	4 cut(s)	376, 436, 460, 834
BspANI	GGCC	5 cut(s)	92, 195, 375, 407, 900
BspCNI	CTCAG	2 cut(s)	203, 639
BspHI	TCATGA	1 cut(s)	885
BspLI	GGNNCC	3 cut(s)	223, 335, 604
BspPI	GGATC	2 cut(s)	451, 643
BspQI	GCTCTTC	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	221
BspTI	CTTAAG	2 cut(s)	149, 263
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	2 cut(s)	34, 818
BsrI	ACTGG	4 cut(s)	99, 399, 670, 873
BssAI	RCCGGY	2 cut(s)	34, 818
BssECI	CCNNGG	5 cut(s)	217, 402, 614, 795, 857
BssMI	GATC	3 cut(s)	259, 456, 648
BssSI	CACGAG	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	857
Bst2BI	CACGAG	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	404, 797
Bst6I	CTCTTC	1 cut(s)	450
BstAFI	CTTAAG	2 cut(s)	149, 263
BstC8I	GCNNGC	1 cut(s)	820
BstDEI	CTNAG	4 cut(s)	62, 190, 626, 810
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	3 cut(s)	262, 459, 651
BstMAI	GTCTC	2 cut(s)	171, 486
BstMBI	GATC	3 cut(s)	259, 456, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 404, 781
BstNI	CCWGG	2 cut(s)	404, 797
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	4 cut(s)	47, 402, 438, 795
BstSLI	GKGCMC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	259, 648
BstYI	RGATCY	2 cut(s)	259, 648
BsuRI	GGCC	5 cut(s)	92, 195, 375, 407, 900
BtgZI	GCGATG	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	106, 866
Cac8I	GCNNGC	1 cut(s)	820
CciI	TCATGA	1 cut(s)	885
CfoI	GCGC	1 cut(s)	548
Cfr10I	RCCGGY	2 cut(s)	34, 818
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	431, 570
CviAII	CATG	8 cut(s)	82, 512, 529, 550, 715, 737, 781, 886
CviQI	GTAC	2 cut(s)	431, 570
DdeI	CTNAG	4 cut(s)	62, 190, 626, 810
DpnI	GATC	3 cut(s)	261, 458, 650
DpnII	GATC	3 cut(s)	259, 456, 648
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	1 cut(s)	425
Ecl136II	GAGCTC	2 cut(s)	508, 625
Eco130I	CCWWGG	1 cut(s)	857
Eco24I	GRGCYC	2 cut(s)	510, 627
Eco53kI	GAGCTC	2 cut(s)	508, 625
EcoICRI	GAGCTC	2 cut(s)	508, 625
EcoRII	CCWGG	2 cut(s)	402, 795
EcoT14I	CCWWGG	1 cut(s)	857
EcoT38I	GRGCYC	2 cut(s)	510, 627
ErhI	CCWWGG	1 cut(s)	857
FaeI	CATG	8 cut(s)	85, 515, 532, 553, 718, 740, 784, 889
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	8 cut(s)	81, 511, 528, 549, 714, 736, 780, 885
Fnu4HI	GCNGC	2 cut(s)	376, 834
FriOI	GRGCYC	2 cut(s)	510, 627
Fsp4HI	GCNGC	2 cut(s)	376, 834
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	2 cut(s)	376, 834
HaeIII	GGCC	5 cut(s)	92, 195, 375, 407, 900
HapII	CCGG	4 cut(s)	35, 48, 440, 819
HhaI	GCGC	1 cut(s)	548
Hin1II	CATG	8 cut(s)	85, 515, 532, 553, 718, 740, 784, 889
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HindIII	AAGCTT	1 cut(s)	229
HinfI	GANTC	3 cut(s)	249, 560, 740
HpaII	CCGG	4 cut(s)	35, 48, 440, 819
Hpy166II	GTNNAC	2 cut(s)	572, 734
Hpy188I	TCNGA	4 cut(s)	159, 280, 319, 369
Hpy188III	TCNNGA	1 cut(s)	886
Hpy8I	GTNNAC	2 cut(s)	572, 734
Hpy99I	CGWCG	1 cut(s)	701
HpyAV	CCTTC	2 cut(s)	49, 418
HpyCH4IV	ACGT	2 cut(s)	240, 582
HpyCH4V	TGCA	3 cut(s)	296, 770, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 404, 781
HpyF3I	CTNAG	4 cut(s)	62, 190, 626, 810
HpySE526I	ACGT	2 cut(s)	240, 582
Hsp92II	CATG	8 cut(s)	85, 515, 532, 553, 718, 740, 784, 889
HspAI	GCGC	1 cut(s)	546
KroI	GCCGGC	1 cut(s)	818
KroNI	GCCGGC	1 cut(s)	820
Kzo9I	GATC	3 cut(s)	259, 456, 648
LguI	GCTCTTC	1 cut(s)	450
LmnI	GCTCC	3 cut(s)	273, 513, 602
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	2 cut(s)	240, 582
MaeIII	GTNAC	2 cut(s)	466, 661
MalI	GATC	3 cut(s)	261, 458, 650
MboI	GATC	3 cut(s)	259, 456, 648
MboII	GAAGA	4 cut(s)	64, 437, 658, 679
MflI	RGATCY	2 cut(s)	259, 648
MhlI	GDGCHC	4 cut(s)	211, 329, 510, 627
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	632, 758
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	2 cut(s)	342, 676
MnlI	CCTC	7 cut(s)	83, 227, 263, 281, 475, 609, 890
Mox20I	TGGCCA	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	818
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	4 cut(s)	150, 264, 692, 839
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	92
MspCI	CTTAAG	2 cut(s)	149, 263
MspI	CCGG	4 cut(s)	35, 48, 440, 819
MspR9I	CCNGG	4 cut(s)	49, 404, 440, 797
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	2 cut(s)	404, 797
MwoI	GCNNNNNNNGC	3 cut(s)	228, 404, 781
NaeI	GCCGGC	1 cut(s)	820
NciI	CCSGG	2 cut(s)	49, 440
NdeII	GATC	3 cut(s)	259, 456, 648
NgoMIV	GCCGGC	1 cut(s)	818
NlaIII	CATG	8 cut(s)	85, 515, 532, 553, 718, 740, 784, 889
NlaIV	GGNNCC	3 cut(s)	223, 335, 604
NmeAIII	GCCGAG	2 cut(s)	198, 639
NmuCI	GTSAC	1 cut(s)	661
NspI	RCATGY	1 cut(s)	718
PagI	TCATGA	1 cut(s)	885
PciI	ACATGT	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	450
PctI	GAATGC	1 cut(s)	868
PdiI	GCCGGC	1 cut(s)	820
PfeI	GAWTC	2 cut(s)	560, 740
PflMI	CCANNNNNTGG	2 cut(s)	105, 717
PkrI	GCNGC	2 cut(s)	377, 835
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PscI	ACATGT	1 cut(s)	714
Psp124BI	GAGCTC	2 cut(s)	510, 627
Psp6I	CCWGG	2 cut(s)	402, 795
PspGI	CCWGG	2 cut(s)	402, 795
PspN4I	GGNNCC	3 cut(s)	223, 335, 604
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	2 cut(s)	259, 648
RsaI	GTAC	2 cut(s)	432, 571
RsaNI	GTAC	2 cut(s)	431, 570
RseI	CAYNNNNRTG	1 cut(s)	86
SacI	GAGCTC	2 cut(s)	510, 627
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	150, 264, 692, 839
SatI	GCNGC	2 cut(s)	376, 834
Sau3AI	GATC	3 cut(s)	259, 456, 648
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	4 cut(s)	49, 404, 440, 797
SduI	GDGCHC	4 cut(s)	211, 329, 510, 627
SfaNI	GCATC	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	149, 263
SmoI	CTYRAG	2 cut(s)	149, 263
Sse9I	AATT	2 cut(s)	632, 758
SsiI	CCGC	4 cut(s)	376, 436, 460, 834
SspMI	CTAG	1 cut(s)	353
SstI	GAGCTC	2 cut(s)	510, 627
StyD4I	CCNGG	4 cut(s)	47, 402, 438, 795
StyI	CCWWGG	1 cut(s)	857
TaiI	ACGT	2 cut(s)	243, 585
TaqI	TCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	632, 758
TatI	WGTACW	1 cut(s)	430
TauI	GCSGC	2 cut(s)	378, 836
TfiI	GAWTC	2 cut(s)	560, 740
Tru1I	TTAA	4 cut(s)	150, 264, 692, 839
Tru9I	TTAA	4 cut(s)	150, 264, 692, 839
TscAI	CASTG	2 cut(s)	106, 873
TseFI	GTSAC	1 cut(s)	661
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	3 cut(s)	331, 769, 866
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	2 cut(s)	106, 873
Van91I	CCANNNNNTGG	2 cut(s)	105, 717
Vha464I	CTTAAG	2 cut(s)	149, 263
XceI	RCATGY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.