Cation H( ) antiporter
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 308 |
| Acc16I | TGCGCA | 1 cut(s) | 924 |
| Acc36I | ACCTGC | 1 cut(s) | 2563 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1558 |
| AccI | GTMKAC | 2 cut(s) | 2111, 2118 |
| AciI | CCGC | 3 cut(s) | 511, 1396, 2238 |
| AclI | AACGTT | 1 cut(s) | 553 |
| AclWI | GGATC | 5 cut(s) | 1305, 1346, 1444, 1457, 1917 |
| AcoI | YGGCCR | 3 cut(s) | 1570, 1581, 2059 |
| AcsI | RAATTY | 4 cut(s) | 13, 314, 624, 2280 |
| AfaI | GTAC | 4 cut(s) | 165, 477, 507, 1701 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 486, 1558, 1579, 1633, 1762 |
| AflII | CTTAAG | 1 cut(s) | 2219 |
| AflIII | ACRYGT | 1 cut(s) | 381 |
| AhlI | ACTAGT | 1 cut(s) | 1555 |
| AjnI | CCWGG | 2 cut(s) | 815, 881 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1832, 1864 |
| AleI | CACNNNNGTG | 1 cut(s) | 1715 |
| Alw21I | GWGCWC | 5 cut(s) | 833, 861, 1892, 2413, 2482 |
| Alw26I | GTCTC | 4 cut(s) | 217, 344, 1699, 2122 |
| Alw44I | GTGCAC | 1 cut(s) | 829 |
| AlwI | GGATC | 5 cut(s) | 1305, 1346, 1444, 1457, 1917 |
| Ama87I | CYCGRG | 1 cut(s) | 1278 |
| AoxI | GGCC | 5 cut(s) | 1570, 1581, 2031, 2059, 2338 |
| ApaLI | GTGCAC | 1 cut(s) | 829 |
| ApeKI | GCWGC | 3 cut(s) | 680, 1181, 1922 |
| ApoI | RAATTY | 4 cut(s) | 13, 314, 624, 2280 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 561, 593 |
| AseI | ATTAAT | 2 cut(s) | 198, 744 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2280 |
| AspA2I | CCTAGG | 1 cut(s) | 965 |
| AspLEI | GCGC | 3 cut(s) | 234, 925, 1976 |
| AspS9I | GGNCC | 4 cut(s) | 278, 489, 569, 1355 |
| AsuC2I | CCSGG | 1 cut(s) | 430 |
| AvaI | CYCGRG | 1 cut(s) | 1278 |
| AvaII | GGWCC | 4 cut(s) | 278, 489, 569, 1355 |
| AvrII | CCTAGG | 1 cut(s) | 965 |
| BaeGI | GKGCMC | 1 cut(s) | 833 |
| BalI | TGGCCA | 1 cut(s) | 2061 |
| BamHI | GGATCC | 1 cut(s) | 1449 |
| BanII | GRGCYC | 1 cut(s) | 861 |
| BauI | CACGAG | 2 cut(s) | 209, 1628 |
| BbsI | GAAGAC | 1 cut(s) | 1990 |
| Bbv12I | GWGCWC | 5 cut(s) | 833, 861, 1892, 2413, 2482 |
| BbvCI | CCTCAGC | 1 cut(s) | 1761 |
| BbvI | GCAGC | 3 cut(s) | 692, 1193, 1909 |
| BccI | CCATC | 5 cut(s) | 58, 113, 1814, 1955, 2047 |
| BceAI | ACGGC | 3 cut(s) | 668, 1532, 1870 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1159, 1193 |
| BciT130I | CCWGG | 2 cut(s) | 817, 883 |
| BciVI | GTATCC | 1 cut(s) | 555 |
| BcnI | CCSGG | 1 cut(s) | 430 |
| BcoDI | GTCTC | 4 cut(s) | 217, 344, 1699, 2122 |
| BcuI | ACTAGT | 1 cut(s) | 1555 |
| BfmI | CTRYAG | 4 cut(s) | 59, 354, 678, 930 |
| BfrI | CTTAAG | 1 cut(s) | 2219 |
| BfuAI | ACCTGC | 1 cut(s) | 2563 |
| BfuI | GTATCC | 1 cut(s) | 555 |
| BglII | AGATCT | 1 cut(s) | 1282 |
| BisI | GCNGC | 3 cut(s) | 681, 1182, 1923 |
| BlnI | CCTAGG | 1 cut(s) | 965 |
| BlsI | GCNGC | 3 cut(s) | 682, 1183, 1924 |
| Bme1390I | CCNGG | 3 cut(s) | 430, 817, 883 |
| Bme18I | GGWCC | 4 cut(s) | 278, 489, 569, 1355 |
| BmeT110I | CYCGRG | 1 cut(s) | 1278 |
| BmgT120I | GGNCC | 4 cut(s) | 278, 489, 569, 1355 |
| BmiI | GGNNCC | 4 cut(s) | 279, 1357, 1432, 1451 |
| BmrFI | CCNGG | 3 cut(s) | 430, 817, 883 |
| BmrI | ACTGGG | 1 cut(s) | 284 |
| BmsI | GCATC | 3 cut(s) | 901, 1020, 1866 |
| BmuI | ACTGGG | 1 cut(s) | 284 |
| BpiI | GAAGAC | 1 cut(s) | 1990 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1058, 1761 |
| BpuEI | CTTGAG | 1 cut(s) | 623 |
| BpuMI | CCSGG | 1 cut(s) | 430 |
| Bsa29I | ATCGAT | 1 cut(s) | 111 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1839 |
| BsaI | GGTCTC | 1 cut(s) | 217 |
| BsaJI | CCNNGG | 5 cut(s) | 768, 965, 1578, 2008, 2341 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 930, 960, 1637, 1667 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 486, 1558, 1579, 1633, 1762 |
| Bse118I | RCCGGY | 1 cut(s) | 1568 |
| Bse1I | ACTGG | 3 cut(s) | 279, 416, 826 |
| Bse3DI | GCAATG | 2 cut(s) | 447, 732 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1839 |
| BseBI | CCWGG | 2 cut(s) | 817, 883 |
| BseCI | ATCGAT | 1 cut(s) | 111 |
| BseDI | CCNNGG | 5 cut(s) | 768, 965, 1578, 2008, 2341 |
| BseGI | GGATG | 4 cut(s) | 298, 1788, 2058, 2494 |
| BseJI | GATNNNNATC | 1 cut(s) | 1839 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 486, 1558, 1579, 1633, 1762 |
| BseMI | GCAATG | 2 cut(s) | 447, 732 |
| BseMII | CTCAG | 3 cut(s) | 212, 717, 1752 |
| BseNI | ACTGG | 3 cut(s) | 279, 416, 826 |
| BseRI | GAGGAG | 2 cut(s) | 635, 1646 |
| BseSI | GKGCMC | 1 cut(s) | 833 |
| BseXI | GCAGC | 3 cut(s) | 692, 1193, 1909 |
| BseYI | CCCAGC | 1 cut(s) | 805 |
| BshFI | GGCC | 5 cut(s) | 1572, 1583, 2033, 2061, 2340 |
| BshVI | ATCGAT | 1 cut(s) | 111 |
| BsiHKAI | GWGCWC | 5 cut(s) | 833, 861, 1892, 2413, 2482 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1278 |
| BsiSI | CCGG | 2 cut(s) | 429, 1569 |
| BslFI | GGGAC | 2 cut(s) | 1837, 2029 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 486, 1558, 1579, 1633, 1762 |
| BsmAI | GTCTC | 4 cut(s) | 217, 344, 1699, 2122 |
| BsmFI | GGGAC | 2 cut(s) | 1837, 2029 |
| BsmI | GAATGC | 1 cut(s) | 925 |
| BsnI | GGCC | 5 cut(s) | 1572, 1583, 2033, 2061, 2340 |
| Bso31I | GGTCTC | 1 cut(s) | 217 |
| BsoBI | CYCGRG | 1 cut(s) | 1278 |
| Bsp1286I | GDGCHC | 5 cut(s) | 833, 861, 1892, 2413, 2482 |
| Bsp1407I | TGTACA | 1 cut(s) | 1699 |
| Bsp143I | GATC | 9 cut(s) | 613, 978, 1072, 1282, 1297, 1338, 1449, 1909, 2023 |
| Bsp19I | CCATGG | 1 cut(s) | 2341 |
| BspACI | CCGC | 3 cut(s) | 511, 1396, 2238 |
| BspANI | GGCC | 5 cut(s) | 1572, 1583, 2033, 2061, 2340 |
| BspCNI | CTCAG | 3 cut(s) | 213, 716, 1753 |
| BspDI | ATCGAT | 1 cut(s) | 111 |
| BspHI | TCATGA | 1 cut(s) | 1233 |
| BspLI | GGNNCC | 4 cut(s) | 279, 1357, 1432, 1451 |
| BspMAI | CTGCAG | 2 cut(s) | 63, 682 |
| BspMI | ACCTGC | 1 cut(s) | 2563 |
| BspPI | GGATC | 5 cut(s) | 1305, 1346, 1444, 1457, 1917 |
| BspQI | GCTCTTC | 1 cut(s) | 2250 |
| BspTI | CTTAAG | 1 cut(s) | 2219 |
| BspTNI | GGTCTC | 1 cut(s) | 217 |
| BsrDI | GCAATG | 2 cut(s) | 447, 732 |
| BsrFI | RCCGGY | 1 cut(s) | 1568 |
| BsrGI | TGTACA | 1 cut(s) | 1699 |
| BsrI | ACTGG | 3 cut(s) | 279, 416, 826 |
| BssAI | RCCGGY | 1 cut(s) | 1568 |
| BssECI | CCNNGG | 5 cut(s) | 768, 965, 1578, 2008, 2341 |
| BssMI | GATC | 9 cut(s) | 613, 978, 1072, 1282, 1297, 1338, 1449, 1909, 2023 |
| BssSI | CACGAG | 2 cut(s) | 209, 1628 |
| BssT1I | CCWWGG | 3 cut(s) | 965, 2008, 2341 |
| Bst2BI | CACGAG | 2 cut(s) | 209, 1628 |
| Bst2UI | CCWGG | 2 cut(s) | 817, 883 |
| Bst4CI | ACNGT | 8 cut(s) | 88, 355, 1345, 1714, 2083, 2116, 2532, 2579 |
| Bst6I | CTCTTC | 3 cut(s) | 162, 1043, 2250 |
| BstAFI | CTTAAG | 1 cut(s) | 2219 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 920 |
| BstAUI | TGTACA | 1 cut(s) | 1699 |
| BstDEI | CTNAG | 7 cut(s) | 221, 346, 443, 703, 1058, 1268, 1761 |
| BstDSI | CCRYGG | 1 cut(s) | 2341 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1760 |
| BstF5I | GGATG | 4 cut(s) | 298, 1788, 2058, 2494 |
| BstHHI | GCGC | 3 cut(s) | 234, 925, 1976 |
| BstKTI | GATC | 9 cut(s) | 616, 981, 1075, 1285, 1300, 1341, 1452, 1912, 2026 |
| BstMAI | GTCTC | 4 cut(s) | 217, 344, 1699, 2122 |
| BstMBI | GATC | 9 cut(s) | 613, 978, 1072, 1282, 1297, 1338, 1449, 1909, 2023 |
| BstNI | CCWGG | 2 cut(s) | 817, 883 |
| BstNSI | RCATGY | 5 cut(s) | 385, 918, 1461, 1929, 2522 |
| BstSCI | CCNGG | 3 cut(s) | 428, 815, 881 |
| BstSFI | CTRYAG | 4 cut(s) | 59, 354, 678, 930 |
| BstSLI | GKGCMC | 1 cut(s) | 833 |
| BstV1I | GCAGC | 3 cut(s) | 692, 1193, 1909 |
| BstV2I | GAAGAC | 1 cut(s) | 1990 |
| BstX2I | RGATCY | 2 cut(s) | 1282, 1449 |
| BstYI | RGATCY | 2 cut(s) | 1282, 1449 |
| Bsu15I | ATCGAT | 1 cut(s) | 111 |
| BsuI | GTATCC | 1 cut(s) | 555 |
| BsuRI | GGCC | 5 cut(s) | 1572, 1583, 2033, 2061, 2340 |
| BsuTUI | ATCGAT | 1 cut(s) | 111 |
| BtgI | CCRYGG | 1 cut(s) | 2341 |
| BtgZI | GCGATG | 1 cut(s) | 1607 |
| BtsCI | GGATG | 4 cut(s) | 298, 1788, 2058, 2494 |
| BtsIMutI | CAGTG | 2 cut(s) | 833, 2584 |
| BveI | ACCTGC | 1 cut(s) | 2563 |
| CciI | TCATGA | 1 cut(s) | 1233 |
| CfoI | GCGC | 3 cut(s) | 234, 925, 1976 |
| Cfr10I | RCCGGY | 1 cut(s) | 1568 |
| Cfr13I | GGNCC | 4 cut(s) | 278, 489, 569, 1355 |
| ClaI | ATCGAT | 1 cut(s) | 111 |
| CseI | GACGC | 1 cut(s) | 1610 |
| Csp6I | GTAC | 4 cut(s) | 164, 476, 506, 1700 |
| CviQI | GTAC | 4 cut(s) | 164, 476, 506, 1700 |
| DdeI | CTNAG | 7 cut(s) | 221, 346, 443, 703, 1058, 1268, 1761 |
| DpnI | GATC | 9 cut(s) | 615, 980, 1074, 1284, 1299, 1340, 1451, 1911, 2025 |
| DpnII | GATC | 9 cut(s) | 613, 978, 1072, 1282, 1297, 1338, 1449, 1909, 2023 |
| DraI | TTTAAA | 2 cut(s) | 100, 1473 |
| EaeI | YGGCCR | 3 cut(s) | 1570, 1581, 2059 |
| Eam1104I | CTCTTC | 3 cut(s) | 162, 1043, 2250 |
| EarI | CTCTTC | 3 cut(s) | 162, 1043, 2250 |
| Ecl136II | GAGCTC | 1 cut(s) | 859 |
| Eco130I | CCWWGG | 3 cut(s) | 965, 2008, 2341 |
| Eco147I | AGGCCT | 1 cut(s) | 2033 |
| Eco24I | GRGCYC | 1 cut(s) | 861 |
| Eco31I | GGTCTC | 1 cut(s) | 217 |
| Eco47I | GGWCC | 4 cut(s) | 278, 489, 569, 1355 |
| Eco53kI | GAGCTC | 1 cut(s) | 859 |
| Eco88I | CYCGRG | 1 cut(s) | 1278 |
| EcoICRI | GAGCTC | 1 cut(s) | 859 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1760 |
| EcoO109I | RGGNCCY | 1 cut(s) | 569 |
| EcoRI | GAATTC | 2 cut(s) | 13, 624 |
| EcoRII | CCWGG | 2 cut(s) | 815, 881 |
| EcoT14I | CCWWGG | 3 cut(s) | 965, 2008, 2341 |
| EcoT22I | ATGCAT | 4 cut(s) | 916, 1740, 2047, 2204 |
| EcoT38I | GRGCYC | 1 cut(s) | 861 |
| ErhI | CCWWGG | 3 cut(s) | 965, 2008, 2341 |
| FaqI | GGGAC | 2 cut(s) | 1837, 2029 |
| FauI | CCCGC | 1 cut(s) | 1403 |
| FauNDI | CATATG | 2 cut(s) | 1748, 2041 |
| FblI | GTMKAC | 2 cut(s) | 2111, 2118 |
| Fnu4HI | GCNGC | 3 cut(s) | 681, 1182, 1923 |
| FokI | GGATG | 4 cut(s) | 285, 1775, 2065, 2501 |
| FriOI | GRGCYC | 1 cut(s) | 861 |
| Fsp4HI | GCNGC | 3 cut(s) | 681, 1182, 1923 |
| FspAI | RTGCGCAY | 1 cut(s) | 924 |
| FspI | TGCGCA | 1 cut(s) | 924 |
| GlaI | GCGC | 3 cut(s) | 233, 924, 1975 |
| GluI | GCNGC | 3 cut(s) | 681, 1182, 1923 |
| GsaI | CCCAGC | 1 cut(s) | 809 |
| HaeIII | GGCC | 5 cut(s) | 1572, 1583, 2033, 2061, 2340 |
| HapII | CCGG | 2 cut(s) | 429, 1569 |
| HgaI | GACGC | 1 cut(s) | 1610 |
| HhaI | GCGC | 3 cut(s) | 234, 925, 1976 |
| Hin6I | GCGC | 3 cut(s) | 232, 923, 1974 |
| HinP1I | GCGC | 3 cut(s) | 232, 923, 1974 |
| HincII | GTYRAC | 4 cut(s) | 342, 765, 1777, 2112 |
| HindII | GTYRAC | 4 cut(s) | 342, 765, 1777, 2112 |
| HindIII | AAGCTT | 1 cut(s) | 985 |
| HinfI | GANTC | 8 cut(s) | 29, 108, 152, 514, 900, 1227, 1835, 2071 |
| HpaI | GTTAAC | 1 cut(s) | 1777 |
| HpaII | CCGG | 2 cut(s) | 429, 1569 |
| Hpy166II | GTNNAC | 7 cut(s) | 342, 376, 765, 831, 1777, 2112, 2119 |
| Hpy188I | TCNGA | 8 cut(s) | 28, 34, 413, 655, 694, 1077, 1449, 2246 |
| Hpy188III | TCNNGA | 6 cut(s) | 220, 1208, 1234, 1280, 2027, 2436 |
| Hpy8I | GTNNAC | 7 cut(s) | 342, 376, 765, 831, 1777, 2112, 2119 |
| Hpy99I | CGWCG | 6 cut(s) | 485, 2113, 2128, 2387, 2390, 2393 |
| HpyAV | CCTTC | 7 cut(s) | 430, 529, 1369, 1378, 1854, 2300, 2368 |
| HpyCH4III | ACNGT | 8 cut(s) | 88, 355, 1345, 1714, 2083, 2116, 2532, 2579 |
| HpyCH4IV | ACGT | 4 cut(s) | 204, 553, 1826, 2108 |
| HpyF3I | CTNAG | 7 cut(s) | 221, 346, 443, 703, 1058, 1268, 1761 |
| HpySE526I | ACGT | 4 cut(s) | 204, 553, 1826, 2108 |
| HspAI | GCGC | 3 cut(s) | 232, 923, 1974 |
| KspAI | GTTAAC | 1 cut(s) | 1777 |
| Kzo9I | GATC | 9 cut(s) | 613, 978, 1072, 1282, 1297, 1338, 1449, 1909, 2023 |
| LguI | GCTCTTC | 1 cut(s) | 2250 |
| LmnI | GCTCC | 7 cut(s) | 648, 864, 938, 953, 2298, 2408, 2485 |
| Lsp1109I | GCAGC | 3 cut(s) | 692, 1193, 1909 |
| LweI | GCATC | 3 cut(s) | 901, 1020, 1866 |
| MaeII | ACGT | 4 cut(s) | 204, 553, 1826, 2108 |
| MaeIII | GTNAC | 3 cut(s) | 82, 92, 1940 |
| MalI | GATC | 9 cut(s) | 615, 980, 1074, 1284, 1299, 1340, 1451, 1911, 2025 |
| MboI | GATC | 9 cut(s) | 613, 978, 1072, 1282, 1297, 1338, 1449, 1909, 2023 |
| MflI | RGATCY | 2 cut(s) | 1282, 1449 |
| MhlI | GDGCHC | 5 cut(s) | 833, 861, 1892, 2413, 2482 |
| MlsI | TGGCCA | 1 cut(s) | 2061 |
| MluNI | TGGCCA | 1 cut(s) | 2061 |
| MlyI | GAGTC | 1 cut(s) | 1236 |
| MmeI | TCCRAC | 6 cut(s) | 305, 717, 1333, 1408, 1576, 2269 |
| Mox20I | TGGCCA | 1 cut(s) | 2061 |
| Mph1103I | ATGCAT | 4 cut(s) | 916, 1740, 2047, 2204 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2280 |
| MscI | TGGCCA | 1 cut(s) | 2061 |
| MseI | TTAA | 9 cut(s) | 99, 198, 744, 1187, 1472, 1776, 2036, 2220, 2294 |
| MslI | CAYNNNNRTG | 4 cut(s) | 501, 1028, 1715, 2044 |
| Msp20I | TGGCCA | 1 cut(s) | 2061 |
| MspCI | CTTAAG | 1 cut(s) | 2219 |
| MspI | CCGG | 2 cut(s) | 429, 1569 |
| MspR9I | CCNGG | 3 cut(s) | 430, 817, 883 |
| Mva1269I | GAATGC | 1 cut(s) | 925 |
| MvaI | CCWGG | 2 cut(s) | 817, 883 |
| NciI | CCSGG | 1 cut(s) | 430 |
| NcoI | CCATGG | 1 cut(s) | 2341 |
| NdeI | CATATG | 2 cut(s) | 1748, 2041 |
| NdeII | GATC | 9 cut(s) | 613, 978, 1072, 1282, 1297, 1338, 1449, 1909, 2023 |
| NlaIV | GGNNCC | 4 cut(s) | 279, 1357, 1432, 1451 |
| NmeAIII | GCCGAG | 2 cut(s) | 749, 1559 |
| NmuCI | GTSAC | 1 cut(s) | 82 |
| NsbI | TGCGCA | 1 cut(s) | 924 |
| NsiI | ATGCAT | 4 cut(s) | 916, 1740, 2047, 2204 |
| NspI | RCATGY | 5 cut(s) | 385, 918, 1461, 1929, 2522 |
| OliI | CACNNNNGTG | 1 cut(s) | 1715 |
| PaeI | GCATGC | 1 cut(s) | 1461 |
| PaeR7I | CTCGAG | 1 cut(s) | 1278 |
| PagI | TCATGA | 1 cut(s) | 1233 |
| PceI | AGGCCT | 1 cut(s) | 2033 |
| PciI | ACATGT | 1 cut(s) | 381 |
| PciSI | GCTCTTC | 1 cut(s) | 2250 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2388 |
| PctI | GAATGC | 1 cut(s) | 925 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2280 |
| PfeI | GAWTC | 7 cut(s) | 29, 108, 152, 514, 900, 1835, 2071 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1558 |
| PfoI | TCCNGGA | 1 cut(s) | 815 |
| PkrI | GCNGC | 3 cut(s) | 682, 1183, 1924 |
| PleI | GAGTC | 1 cut(s) | 1235 |
| PpsI | GAGTC | 1 cut(s) | 1235 |
| PpuMI | RGGWCCY | 1 cut(s) | 569 |
| PscI | ACATGT | 1 cut(s) | 381 |
| PshBI | ATTAAT | 2 cut(s) | 198, 744 |
| PsiI | TTATAA | 1 cut(s) | 308 |
| Psp124BI | GAGCTC | 1 cut(s) | 861 |
| Psp1406I | AACGTT | 1 cut(s) | 553 |
| Psp5II | RGGWCCY | 1 cut(s) | 569 |
| Psp6I | CCWGG | 2 cut(s) | 815, 881 |
| PspFI | CCCAGC | 1 cut(s) | 805 |
| PspGI | CCWGG | 2 cut(s) | 815, 881 |
| PspN4I | GGNNCC | 4 cut(s) | 279, 1357, 1432, 1451 |
| PspPI | GGNCC | 4 cut(s) | 278, 489, 569, 1355 |
| PspPPI | RGGWCCY | 1 cut(s) | 569 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 783, 815 |
| PstI | CTGCAG | 2 cut(s) | 63, 682 |
| PsuI | RGATCY | 2 cut(s) | 1282, 1449 |
| RsaI | GTAC | 4 cut(s) | 165, 477, 507, 1701 |
| RsaNI | GTAC | 4 cut(s) | 164, 476, 506, 1700 |
| RseI | CAYNNNNRTG | 4 cut(s) | 501, 1028, 1715, 2044 |
| SacI | GAGCTC | 1 cut(s) | 861 |
| SalI | GTCGAC | 1 cut(s) | 2110 |
| SapI | GCTCTTC | 1 cut(s) | 2250 |
| SaqAI | TTAA | 9 cut(s) | 99, 198, 744, 1187, 1472, 1776, 2036, 2220, 2294 |
| SatI | GCNGC | 3 cut(s) | 681, 1182, 1923 |
| Sau3AI | GATC | 9 cut(s) | 613, 978, 1072, 1282, 1297, 1338, 1449, 1909, 2023 |
| Sau96I | GGNCC | 4 cut(s) | 278, 489, 569, 1355 |
| SchI | GAGTC | 1 cut(s) | 1236 |
| ScrFI | CCNGG | 3 cut(s) | 430, 817, 883 |
| SduI | GDGCHC | 5 cut(s) | 833, 861, 1892, 2413, 2482 |
| SfaNI | GCATC | 3 cut(s) | 901, 1020, 1866 |
| SfcI | CTRYAG | 4 cut(s) | 59, 354, 678, 930 |
| Sfr274I | CTCGAG | 1 cut(s) | 1278 |
| SinI | GGWCC | 4 cut(s) | 278, 489, 569, 1355 |
| SlaI | CTCGAG | 1 cut(s) | 1278 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 501, 1028, 1715, 2044 |
| SmlI | CTYRAG | 3 cut(s) | 638, 1278, 2219 |
| SmoI | CTYRAG | 3 cut(s) | 638, 1278, 2219 |
| SpeI | ACTAGT | 1 cut(s) | 1555 |
| SphI | GCATGC | 1 cut(s) | 1461 |
| SseBI | AGGCCT | 1 cut(s) | 2033 |
| SsiI | CCGC | 3 cut(s) | 511, 1396, 2238 |
| SspI | AATATT | 1 cut(s) | 1935 |
| SstI | GAGCTC | 1 cut(s) | 861 |
| StuI | AGGCCT | 1 cut(s) | 2033 |
| StyD4I | CCNGG | 3 cut(s) | 428, 815, 881 |
| StyI | CCWWGG | 3 cut(s) | 965, 2008, 2341 |
| TaaI | ACNGT | 8 cut(s) | 88, 355, 1345, 1714, 2083, 2116, 2532, 2579 |
| TaiI | ACGT | 4 cut(s) | 207, 556, 1829, 2111 |
| TaqI | TCGA | 9 cut(s) | 20, 111, 622, 1122, 1207, 1279, 2026, 2111, 2435 |
| TaqII | GACCGA | 1 cut(s) | 2525 |
| TatI | WGTACW | 3 cut(s) | 163, 505, 1699 |
| TfiI | GAWTC | 7 cut(s) | 29, 108, 152, 514, 900, 1835, 2071 |
| Tru1I | TTAA | 9 cut(s) | 99, 198, 744, 1187, 1472, 1776, 2036, 2220, 2294 |
| Tru9I | TTAA | 9 cut(s) | 99, 198, 744, 1187, 1472, 1776, 2036, 2220, 2294 |
| TscAI | CASTG | 2 cut(s) | 833, 2584 |
| TseFI | GTSAC | 1 cut(s) | 82 |
| TseI | GCWGC | 3 cut(s) | 680, 1181, 1922 |
| Tsp45I | GTSAC | 1 cut(s) | 82 |
| TspGWI | ACGGA | 1 cut(s) | 1650 |
| TspRI | CASTG | 2 cut(s) | 833, 2584 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1558 |
| Vha464I | CTTAAG | 1 cut(s) | 2219 |
| VneI | GTGCAC | 1 cut(s) | 829 |
| VpaK11BI | GGWCC | 4 cut(s) | 278, 489, 569, 1355 |
| VspI | ATTAAT | 2 cut(s) | 198, 744 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1760 |
| XapI | RAATTY | 4 cut(s) | 13, 314, 624, 2280 |
| XceI | RCATGY | 5 cut(s) | 385, 918, 1461, 1929, 2522 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 656, 813, 1249 |
| XhoI | CTCGAG | 1 cut(s) | 1278 |
| XmaJI | CCTAGG | 1 cut(s) | 965 |
| XmiI | GTMKAC | 2 cut(s) | 2111, 2118 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2280 |
| Zsp2I | ATGCAT | 4 cut(s) | 916, 1740, 2047, 2204 |