RLG00000033248

Cation H( ) antiporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
24826413 .. 24829752
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033248

Sequence Viewer

Length: 2520 bp
ATGTCGGAGATATCTTTAGCGTTGAGAGCAAACATTACAGCTCAAGTTGAACAGTTGGGATTTGCTCTTCCTTATAACAACAGAACCCATACAGTGGTATGTTATAATCTATTTGTTAGGAAATCAAGTAAGCAACTACAACATTTGAGACTTCCCACGGACTTGATTCTCCCTGTCTTCTTAGTCCAAATCGTGAGCATCATGTTCGTTTCTAGCATTCTCGTGCTCGCCCTCAAACGCTTCCACCAACCACGTATTGTCGCTGAAATTCTTGCTGGCTTTCTCTTGGGGCCAACTCTTTTGGGGGAAATTTTGAATAGATTACACATGTTTACCACTTTTGCTCCATTTGAAAGCGTGCTGAGCTTAGAAACTATAGGAAACCTGGGCCTAGTTTACTACATGTTTCTGGTGGGATTAGAACTTGAACTAAAGCCGGTAATCCGTGTCGGGAAGAAGGCTCTTAGCATTGCCCTCGTAGGCATGGTGGTGGCCATCGCCAGTGGTTGGGGCTTGTTTTTTGTCCTAGACGACAACATCAAGCCTAATCTTAAGTTTCTGAAAGCCCCAAATCAGCAAGACAACACACACTCAGGCCACTTGTTCTGGGCAGTCGCCCTCGGCTCCACAAGCTTCCCAGACGTGGCTCGACTCCTCGCAGATCTTAAGCTCCTCCACTCCGAGCTTGGACGACTTGCATTGTCATCTGCTGTCATCTCCGACCTGTGCTCGTGGTTCCTTTTCATCTTGCTACTAGCACTAACCAATATGACGGGCCACTTTTTCGTGGCCGGACTGACTACCCTGGCCTTCGTATGGTTTTGTGTTTTTGTACTCCGCCCGGCTCTTCCAAAGCTGATCCGCTTCATAACCAAAAACAAAGAGGACAAGAGAGACAACTACAATGAGCTCCATGTGAGCTTTGTTCTCATGGGGGTTCTGGTATGCGCCATGATAACTGATTCGTTAGGTACACTATCCTACGTTGGGGCTTTCGTGTTTGGAGCCATTATGCCGAGGGGAGAGCTCAGCAAATTGGTCGTAGAGAAGATCCAACCCTTTGTGACTGGGATTATGATGCCCCTTTTCTTCTTAATCGTCGGGCTACGAACCAACATGTGGTTTGTATTCAGTTCACATGATTCTTATACGCCCTTTCAATTCAAATATGCAAAGCGTTTCATGCTGGTTCTCTCCCTGGCTTTCTTACCTAAGATTGCCGGCAGTTTTGTTGCCGCTTTAATCCACAAAATGAAACCTTGGAATGCACTGGCTCTGGGAGTAACCTTGGACCAGAAAACATTCCCAGCAATGATCCTTGTGGTTTGGGCACTGATGATTCCGATCGGACCATTCCTAGCCTACAGTTACAAGACCACCAAGCATTTCGGGCAATACAAATATAGGAACATACGAAGCATGGGATCCGACACAGAGCTTCGCATCCTTGCATGCACCCACGACTCACGCAACTCACCCGCCGTCATCAATCTTCTTGAAGCTTCCAATCCAACCAGACAGTCCCCGATCCAAGTCTTTGCTGTCCAGCTAGTCGAAATGATTGGCCACACTTCCGCCATGCTCATTGTCCATGATGCTTGCAAAACCAACAATGAAGGGAGCAAGCACAAGGCCGGACAAATATCCTCATCGTTGCCCTCCAATCCCCTTGAACTCTACGCAAAGGAAAGAGAGAATGTCCATGTCCAGGCACTCACCATCGTCTCGGCCTACGCCACAATGCATGAAGACATATGCAACTTTGCGGAGGACAAGTGCATTACCCTTGTGATTGTCCCGTTCCATCGACAATCCACCCTAGACGGAACCATGGAGGAGTCCAACCCTGCTCTCAGGGCAGTCAATAGAAATGTCATTGACAACGCACCATGCTCAGTGGGTGTTCTTGTGGACCGTGGGCTCGGTATATCCCGGATCTTCAAGTCCAACATCAGCAGCCACATTAGCTCCGATGACGTGAGCTACCACCGCTTTGCTGTATTTTTCATTGGAGGGGCAGATGACCGTGAGGCATTAGCATATGCAAAAAGGATGGCTGGGCATTCCAGGGTTGACCTAACAGTTGTTCGGTTCATCTTAAATACAGAGGCATGCTTAGATGATGCTGACTACGACAACGAAATTATAGAGGCAATGGCAAACACTGGGAGGCAAAAACAGCTTGATGACTTATACCTGGATGGTTTTAGGGTCCATACAATGCACAATTCCTCCATAAAGTTGGTAGAGGAGGTGGCGAATAGCTGGGAAGAAACTCTGGACGCCATAAACGACATGGAGGGTGATTACGATTTGTACATAATGGGAAGACGACACGGAAGCAGAAGCACGTTGGCAGTGACATCAGAATTGGACAGCAGCGACTGTGATGAGCTCGGTACCCTGGCAGAGGCGTTAGTGTCTTCTAGCTTTTTTAAGGTTAATACATCTATTCTCATAGTGCAGCAAGGTGCTGCTGTAGAGGAAATACAAGATGAGTCGGATAGCCAGGAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

840

Amino Acids

93.35

Weight (kDa)

6.28

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 69 - 434 1.1e-46 Sodium/hydrogen exchanger, transmembrane
CHX17_2nd PF23256 512 - 642 9.1e-17 Plant cation/H(+) antiporter domain
CHX17_C PF23259 666 - 823 7e-11 Plant cation/H(+) antiporter, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 75, 105
Acc65I GGTACC 1 cut(s) 2399
AccB1I GGYRCC 1 cut(s) 2399
AccB7I CCANNNNNTGG 3 cut(s) 94, 507, 1119
AciI CCGC 7 cut(s) 838, 862, 1236, 1479, 1575, 1766, 1990
AclWI GGATC 7 cut(s) 853, 1045, 1309, 1419, 1432, 1522, 1943
AcoI YGGCCR 3 cut(s) 492, 789, 1564
AcsI RAATTY 2 cut(s) 267, 309
AcyI GRCGYC 1 cut(s) 2283
AfaI GTAC 4 cut(s) 834, 973, 2318, 2401
AfiI CCNNNNNNNGG 8 cut(s) 94, 507, 643, 816, 987, 1119, 1708, 2410
AflII CTTAAG 2 cut(s) 551, 665
AflIII ACRYGT 3 cut(s) 327, 402, 1116
AgsI TTSAA 9 cut(s) 50, 316, 353, 428, 1160, 1165, 1499, 1673, 1942
AjiI CACGTC 2 cut(s) 643, 1978
AjnI CCWGG 8 cut(s) 384, 804, 1197, 1707, 2066, 2196, 2403, 2508
Alw21I GWGCWC 5 cut(s) 228, 731, 912, 1029, 2397
Alw26I GTCTC 3 cut(s) 142, 888, 1729
AlwI GGATC 7 cut(s) 853, 1045, 1309, 1419, 1432, 1522, 1943
AlwNI CAGNNNCTG 1 cut(s) 2385
ApeKI GCWGC 4 cut(s) 1956, 2379, 2464, 2474
ApoI RAATTY 2 cut(s) 267, 309
Asp700I GAANNNNTTC 1 cut(s) 1301
Asp718I GGTACC 1 cut(s) 2399
AspLEI GCGC 1 cut(s) 950
AspS9I GGNCC 7 cut(s) 290, 388, 775, 1291, 1349, 1912, 2212
AsuC2I CCSGG 2 cut(s) 842, 1933
AsuHPI GGTGA 3 cut(s) 1467, 1708, 2315
AvaII GGWCC 4 cut(s) 1291, 1349, 1912, 2212
BaeGI GKGCMC 1 cut(s) 1333
BalI TGGCCA 2 cut(s) 494, 1566
BamHI GGATCC 1 cut(s) 1424
BanI GGYRCC 1 cut(s) 2399
BanII GRGCYC 4 cut(s) 912, 1029, 1923, 2397
BauI CACGAG 2 cut(s) 221, 730
BbsI GAAGAC 4 cut(s) 169, 1755, 2335, 2415
Bbv12I GWGCWC 5 cut(s) 228, 731, 912, 1029, 2397
BbvI GCAGC 4 cut(s) 1968, 2391, 2461, 2476
BccI CCATC 5 cut(s) 503, 1727, 1812, 2047, 2195
BceAI ACGGC 1 cut(s) 1466
BcgI CGANNNNNNTGC 6 cut(s) 187, 221, 457, 491, 1021, 1055
BciT130I CCWGG 8 cut(s) 386, 806, 1199, 1709, 2068, 2198, 2405, 2510
BcnI CCSGG 2 cut(s) 842, 1933
BcoDI GTCTC 3 cut(s) 142, 888, 1729
BfaI CTAG 8 cut(s) 213, 392, 527, 755, 1358, 1550, 1820, 2427
BfmI CTRYAG 3 cut(s) 375, 1363, 2478
BfrI CTTAAG 2 cut(s) 551, 665
BglII AGATCT 1 cut(s) 661
BisI GCNGC 5 cut(s) 1236, 1957, 2380, 2465, 2475
BlpI GCTNAGC 2 cut(s) 362, 1028
BlsI GCNGC 5 cut(s) 1237, 1958, 2381, 2466, 2476
Bme18I GGWCC 4 cut(s) 1291, 1349, 1912, 2212
BmgBI CACGTC 2 cut(s) 643, 1978
BmgT120I GGNCC 7 cut(s) 290, 388, 775, 1291, 1349, 1912, 2212
BmiI GGNNCC 8 cut(s) 291, 625, 737, 1006, 1426, 1828, 2213, 2401
BmrI ACTGGG 2 cut(s) 1077, 2175
BmsI GCATC 5 cut(s) 207, 1068, 1452, 1585, 2113
BmuI ACTGGG 2 cut(s) 1077, 2175
BpiI GAAGAC 4 cut(s) 169, 1755, 2335, 2415
Bpu1102I GCTNAGC 2 cut(s) 362, 1028
BpuEI CTTGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 842, 1933
BsaAI YACGTR 1 cut(s) 254
BsaBI GATNNNNATC 1 cut(s) 1343
BsaHI GRCGYC 1 cut(s) 2283
BsaXI ACNNNNNCTCC 8 cut(s) 328, 358, 1760, 1790, 1952, 1982, 2216, 2246
Bsc4I CCNNNNNNNGG 8 cut(s) 94, 507, 643, 816, 987, 1119, 1708, 2410
Bse118I RCCGGY 2 cut(s) 436, 1220
Bse1I ACTGG 4 cut(s) 501, 1072, 1275, 2170
Bse3DI GCAATG 3 cut(s) 468, 1317, 2160
Bse8I GATNNNNATC 1 cut(s) 1343
BseBI CCWGG 8 cut(s) 386, 806, 1199, 1709, 2068, 2198, 2405, 2510
BseGI GGATG 3 cut(s) 1443, 2058, 2206
BseJI GATNNNNATC 1 cut(s) 1343
BseLI CCNNNNNNNGG 8 cut(s) 94, 507, 643, 816, 987, 1119, 1708, 2410
BseMI GCAATG 3 cut(s) 468, 1317, 2160
BseMII CTCAG 5 cut(s) 353, 606, 1042, 1867, 1908
BseNI ACTGG 4 cut(s) 501, 1072, 1275, 2170
BseRI GAGGAG 4 cut(s) 644, 662, 1850, 2264
BseSI GKGCMC 1 cut(s) 1333
BseXI GCAGC 4 cut(s) 1968, 2391, 2461, 2476
BseYI CCCAGC 3 cut(s) 1306, 2057, 2265
BsgI GTGCAG 1 cut(s) 2483
Bsh1285I CGRYCG 1 cut(s) 1347
BshNI GGYRCC 1 cut(s) 2399
BsiEI CGRYCG 1 cut(s) 1347
BsiHKAI GWGCWC 5 cut(s) 228, 731, 912, 1029, 2397
BsiSI CCGG 6 cut(s) 437, 792, 842, 1221, 1635, 1933
BslFI GGGAC 2 cut(s) 1507, 1781
BslI CCNNNNNNNGG 8 cut(s) 94, 507, 643, 816, 987, 1119, 1708, 2410
BsmAI GTCTC 3 cut(s) 142, 888, 1729
BsmBI CGTCTC 1 cut(s) 1729
BsmFI GGGAC 2 cut(s) 1507, 1781
BsmI GAATGC 3 cut(s) 216, 1270, 2062
Bsp1286I GDGCHC 7 cut(s) 228, 731, 912, 1029, 1333, 1923, 2397
Bsp1407I TGTACA 1 cut(s) 2316
Bsp143I GATC 8 cut(s) 661, 858, 1050, 1314, 1344, 1424, 1527, 1935
Bsp1720I GCTNAGC 2 cut(s) 362, 1028
Bsp19I CCATGG 1 cut(s) 1830
BspACI CCGC 7 cut(s) 838, 862, 1236, 1479, 1575, 1766, 1990
BspCNI CTCAG 5 cut(s) 354, 605, 1041, 1866, 1907
BspLI GGNNCC 8 cut(s) 291, 625, 737, 1006, 1426, 1828, 2213, 2401
BspPI GGATC 7 cut(s) 853, 1045, 1309, 1419, 1432, 1522, 1943
BspQI GCTCTTC 2 cut(s) 72, 852
BspT107I GGYRCC 1 cut(s) 2399
BspTI CTTAAG 2 cut(s) 551, 665
BsrDI GCAATG 3 cut(s) 468, 1317, 2160
BsrFI RCCGGY 2 cut(s) 436, 1220
BsrGI TGTACA 1 cut(s) 2316
BsrI ACTGG 4 cut(s) 501, 1072, 1275, 2170
BssAI RCCGGY 2 cut(s) 436, 1220
BssMI GATC 8 cut(s) 661, 858, 1050, 1314, 1344, 1424, 1527, 1935
BssNI GRCGYC 1 cut(s) 2283
BssSI CACGAG 2 cut(s) 221, 730
BssT1I CCWWGG 3 cut(s) 1259, 1287, 1830
Bst2BI CACGAG 2 cut(s) 221, 730
Bst2UI CCWGG 8 cut(s) 386, 806, 1199, 1709, 2068, 2198, 2405, 2510
Bst4CI ACNGT 8 cut(s) 54, 94, 1367, 1521, 1916, 2027, 2083, 2387
Bst6I CTCTTC 2 cut(s) 72, 852
BstACI GRCGYC 1 cut(s) 2283
BstAFI CTTAAG 2 cut(s) 551, 665
BstAUI TGTACA 1 cut(s) 2316
BstBAI YACGTR 1 cut(s) 254
BstC8I GCNNGC 8 cut(s) 228, 277, 359, 1222, 1453, 1600, 1625, 2113
BstDSI CCRYGG 3 cut(s) 156, 1830, 1915
BstENI CCTNNNNNAGG 1 cut(s) 2408
BstF5I GGATG 3 cut(s) 1443, 2058, 2206
BstHHI GCGC 1 cut(s) 950
BstKTI GATC 8 cut(s) 664, 861, 1053, 1317, 1347, 1427, 1530, 1938
BstMAI GTCTC 3 cut(s) 142, 888, 1729
BstMBI GATC 8 cut(s) 661, 858, 1050, 1314, 1344, 1424, 1527, 1935
BstMCI CGRYCG 1 cut(s) 1347
BstMWI GCNNNNNNNGC 9 cut(s) 26, 363, 630, 1183, 1390, 1856, 1965, 1989, 2179
BstNI CCWGG 8 cut(s) 386, 806, 1199, 1709, 2068, 2198, 2405, 2510
BstNSI RCATGY 5 cut(s) 331, 406, 1120, 1455, 2115
BstSFI CTRYAG 3 cut(s) 375, 1363, 2478
BstSLI GKGCMC 1 cut(s) 1333
BstV1I GCAGC 4 cut(s) 1968, 2391, 2461, 2476
BstV2I GAAGAC 4 cut(s) 169, 1755, 2335, 2415
BstX2I RGATCY 4 cut(s) 661, 1050, 1424, 1935
BstXI CCANNNNNNTGG 1 cut(s) 2242
BstYI RGATCY 4 cut(s) 661, 1050, 1424, 1935
BtgI CCRYGG 3 cut(s) 156, 1830, 1915
BtgZI GCGATG 1 cut(s) 481
BtrI CACGTC 2 cut(s) 643, 1978
BtsCI GGATG 3 cut(s) 1443, 2058, 2206
BtsI GCAGTG 1 cut(s) 2364
BtsIMutI CAGTG 7 cut(s) 99, 508, 1268, 1331, 1902, 2163, 2364
Cac8I GCNNGC 8 cut(s) 228, 277, 359, 1222, 1453, 1600, 1625, 2113
CaiI CAGNNNCTG 1 cut(s) 2385
CfoI GCGC 1 cut(s) 950
Cfr10I RCCGGY 2 cut(s) 436, 1220
Cfr13I GGNCC 7 cut(s) 290, 388, 775, 1291, 1349, 1912, 2212
CseI GACGC 1 cut(s) 2291
Csp6I GTAC 4 cut(s) 833, 972, 2317, 2400
CviQI GTAC 4 cut(s) 833, 972, 2317, 2400
DpnI GATC 8 cut(s) 663, 860, 1052, 1316, 1346, 1426, 1529, 1937
DpnII GATC 8 cut(s) 661, 858, 1050, 1314, 1344, 1424, 1527, 1935
EaeI YGGCCR 3 cut(s) 492, 789, 1564
Eam1104I CTCTTC 2 cut(s) 72, 852
EarI CTCTTC 2 cut(s) 72, 852
EciI GGCGGA 2 cut(s) 827, 1564
Ecl136II GAGCTC 3 cut(s) 910, 1027, 2395
Eco130I CCWWGG 3 cut(s) 1259, 1287, 1830
Eco24I GRGCYC 4 cut(s) 912, 1029, 1923, 2397
Eco32I GATATC 1 cut(s) 12
Eco47I GGWCC 4 cut(s) 1291, 1349, 1912, 2212
Eco53kI GAGCTC 3 cut(s) 910, 1027, 2395
EcoICRI GAGCTC 3 cut(s) 910, 1027, 2395
EcoNI CCTNNNNNAGG 1 cut(s) 2408
EcoRII CCWGG 8 cut(s) 384, 804, 1197, 1707, 2066, 2196, 2403, 2508
EcoRV GATATC 1 cut(s) 12
EcoT14I CCWWGG 3 cut(s) 1259, 1287, 1830
EcoT22I ATGCAT 1 cut(s) 1746
EcoT38I GRGCYC 4 cut(s) 912, 1029, 1923, 2397
ErhI CCWWGG 3 cut(s) 1259, 1287, 1830
Esp3I CGTCTC 1 cut(s) 1729
FaqI GGGAC 2 cut(s) 1507, 1781
FauI CCCGC 1 cut(s) 1486
FauNDI CATATG 2 cut(s) 1754, 2041
Fnu4HI GCNGC 5 cut(s) 1236, 1957, 2380, 2465, 2475
FokI GGATG 3 cut(s) 1430, 2065, 2213
FriOI GRGCYC 4 cut(s) 912, 1029, 1923, 2397
Fsp4HI GCNGC 5 cut(s) 1236, 1957, 2380, 2465, 2475
FspBI CTAG 8 cut(s) 213, 392, 527, 755, 1358, 1550, 1820, 2427
GlaI GCGC 1 cut(s) 949
GluI GCNGC 5 cut(s) 1236, 1957, 2380, 2465, 2475
GsaI CCCAGC 3 cut(s) 1310, 2061, 2269
HapII CCGG 6 cut(s) 437, 792, 842, 1221, 1635, 1933
HgaI GACGC 1 cut(s) 2291
HhaI GCGC 1 cut(s) 950
Hin1I GRCGYC 1 cut(s) 2283
Hin6I GCGC 1 cut(s) 948
HinP1I GCGC 1 cut(s) 948
HincII GTYRAC 1 cut(s) 2074
HindII GTYRAC 1 cut(s) 2074
HindIII AAGCTT 2 cut(s) 631, 1500
HinfI GANTC 8 cut(s) 166, 651, 962, 1142, 1339, 1463, 1838, 2498
HpaII CCGG 6 cut(s) 437, 792, 842, 1221, 1635, 1933
HphI GGTGA 3 cut(s) 1467, 1708, 2315
Hpy166II GTNNAC 6 cut(s) 333, 397, 974, 1136, 1912, 2074
Hpy188III TCNNGA 4 cut(s) 193, 451, 1496, 2279
Hpy8I GTNNAC 6 cut(s) 333, 397, 974, 1136, 1912, 2074
Hpy99I CGWCG 1 cut(s) 1103
HpyAV CCTTC 3 cut(s) 451, 820, 1610
HpyCH4III ACNGT 8 cut(s) 54, 94, 1367, 1521, 1916, 2027, 2083, 2387
HpyCH4IV ACGT 5 cut(s) 253, 642, 984, 1977, 2351
HpyF10VI GCNNNNNNNGC 9 cut(s) 26, 363, 630, 1183, 1390, 1856, 1965, 1989, 2179
HpySE526I ACGT 5 cut(s) 253, 642, 984, 1977, 2351
Hsp92I GRCGYC 1 cut(s) 2283
HspAI GCGC 1 cut(s) 948
KpnI GGTACC 1 cut(s) 2403
KroI GCCGGC 1 cut(s) 1220
KroNI GCCGGC 1 cut(s) 1222
Kzo9I GATC 8 cut(s) 661, 858, 1050, 1314, 1344, 1424, 1527, 1935
LguI GCTCTTC 2 cut(s) 72, 852
LmnI GCTCC 7 cut(s) 349, 629, 675, 915, 1004, 1620, 1973
Lsp1109I GCAGC 4 cut(s) 1968, 2391, 2461, 2476
LweI GCATC 5 cut(s) 207, 1068, 1452, 1585, 2113
MaeI CTAG 8 cut(s) 213, 392, 527, 755, 1358, 1550, 1820, 2427
MaeII ACGT 5 cut(s) 253, 642, 984, 1977, 2351
MaeIII GTNAC 4 cut(s) 1063, 1282, 1367, 2359
MalI GATC 8 cut(s) 663, 860, 1052, 1316, 1346, 1426, 1529, 1937
MboI GATC 8 cut(s) 661, 858, 1050, 1314, 1344, 1424, 1527, 1935
MflI RGATCY 4 cut(s) 661, 1050, 1424, 1935
MhlI GDGCHC 7 cut(s) 228, 731, 912, 1029, 1333, 1923, 2397
MlsI TGGCCA 2 cut(s) 494, 1566
MluCI AATT 7 cut(s) 267, 309, 1034, 1160, 2142, 2227, 2369
MluNI TGGCCA 2 cut(s) 494, 1566
MlyI GAGTC 4 cut(s) 645, 1457, 1847, 2507
MmeI TCCRAC 7 cut(s) 744, 1078, 1452, 1535, 1866, 1971, 2481
Mox20I TGGCCA 2 cut(s) 494, 1566
Mph1103I ATGCAT 1 cut(s) 1746
MroNI GCCGGC 1 cut(s) 1220
MroXI GAANNNNTTC 1 cut(s) 1301
MscI TGGCCA 2 cut(s) 494, 1566
MseI TTAA 7 cut(s) 552, 666, 1094, 1241, 2099, 2436, 2442
MslI CAYNNNNRTG 2 cut(s) 221, 488
Msp20I TGGCCA 2 cut(s) 494, 1566
MspCI CTTAAG 2 cut(s) 551, 665
MspI CCGG 6 cut(s) 437, 792, 842, 1221, 1635, 1933
Mva1269I GAATGC 3 cut(s) 216, 1270, 2062
MvaI CCWGG 8 cut(s) 386, 806, 1199, 1709, 2068, 2198, 2405, 2510
MwoI GCNNNNNNNGC 9 cut(s) 26, 363, 630, 1183, 1390, 1856, 1965, 1989, 2179
NaeI GCCGGC 1 cut(s) 1222
NciI CCSGG 2 cut(s) 842, 1933
NcoI CCATGG 1 cut(s) 1830
NdeI CATATG 2 cut(s) 1754, 2041
NdeII GATC 8 cut(s) 661, 858, 1050, 1314, 1344, 1424, 1527, 1935
NgoMIV GCCGGC 1 cut(s) 1220
NlaIV GGNNCC 8 cut(s) 291, 625, 737, 1006, 1426, 1828, 2213, 2401
NmeAIII GCCGAG 3 cut(s) 600, 1041, 1706
NmuCI GTSAC 2 cut(s) 1063, 2359
NsiI ATGCAT 1 cut(s) 1746
NspI RCATGY 5 cut(s) 331, 406, 1120, 1455, 2115
PaeI GCATGC 2 cut(s) 1455, 2115
PciI ACATGT 3 cut(s) 327, 402, 1116
PciSI GCTCTTC 2 cut(s) 72, 852
PcsI WCGNNNNNNNCGW 1 cut(s) 2289
PctI GAATGC 3 cut(s) 216, 1270, 2062
PdiI GCCGGC 1 cut(s) 1222
PdmI GAANNNNTTC 1 cut(s) 1301
PfeI GAWTC 4 cut(s) 166, 962, 1142, 1339
PflMI CCANNNNNTGG 3 cut(s) 94, 507, 1119
PfoI TCCNGGA 1 cut(s) 1931
PkrI GCNGC 5 cut(s) 1237, 1958, 2381, 2466, 2476
Ple19I CGATCG 1 cut(s) 1347
PleI GAGTC 4 cut(s) 645, 1457, 1846, 2506
PpsI GAGTC 4 cut(s) 645, 1457, 1846, 2506
Ppu21I YACGTR 1 cut(s) 254
PscI ACATGT 3 cut(s) 327, 402, 1116
PsiI TTATAA 2 cut(s) 75, 105
Psp124BI GAGCTC 3 cut(s) 912, 1029, 2397
Psp6I CCWGG 8 cut(s) 384, 804, 1197, 1707, 2066, 2196, 2403, 2508
PspFI CCCAGC 3 cut(s) 1306, 2057, 2265
PspGI CCWGG 8 cut(s) 384, 804, 1197, 1707, 2066, 2196, 2403, 2508
PspN4I GGNNCC 8 cut(s) 291, 625, 737, 1006, 1426, 1828, 2213, 2401
PspPI GGNCC 7 cut(s) 290, 388, 775, 1291, 1349, 1912, 2212
PstNI CAGNNNCTG 1 cut(s) 2385
PsuI RGATCY 4 cut(s) 661, 1050, 1424, 1935
PvuI CGATCG 1 cut(s) 1347
RsaI GTAC 4 cut(s) 834, 973, 2318, 2401
RsaNI GTAC 4 cut(s) 833, 972, 2317, 2400
RseI CAYNNNNRTG 2 cut(s) 221, 488
SacI GAGCTC 3 cut(s) 912, 1029, 2397
SapI GCTCTTC 2 cut(s) 72, 852
SaqAI TTAA 7 cut(s) 552, 666, 1094, 1241, 2099, 2436, 2442
SatI GCNGC 5 cut(s) 1236, 1957, 2380, 2465, 2475
Sau3AI GATC 8 cut(s) 661, 858, 1050, 1314, 1344, 1424, 1527, 1935
Sau96I GGNCC 7 cut(s) 290, 388, 775, 1291, 1349, 1912, 2212
SchI GAGTC 4 cut(s) 645, 1457, 1847, 2507
SduI GDGCHC 7 cut(s) 228, 731, 912, 1029, 1333, 1923, 2397
SfaNI GCATC 5 cut(s) 207, 1068, 1452, 1585, 2113
SfcI CTRYAG 3 cut(s) 375, 1363, 2478
SinI GGWCC 4 cut(s) 1291, 1349, 1912, 2212
SmiMI CAYNNNNRTG 2 cut(s) 221, 488
SmlI CTYRAG 3 cut(s) 42, 551, 665
SmoI CTYRAG 3 cut(s) 42, 551, 665
SphI GCATGC 2 cut(s) 1455, 2115
Sse9I AATT 7 cut(s) 267, 309, 1034, 1160, 2142, 2227, 2369
SsiI CCGC 7 cut(s) 838, 862, 1236, 1479, 1575, 1766, 1990
SspMI CTAG 8 cut(s) 213, 392, 527, 755, 1358, 1550, 1820, 2427
SstI GAGCTC 3 cut(s) 912, 1029, 2397
StyI CCWWGG 3 cut(s) 1259, 1287, 1830
TaaI ACNGT 8 cut(s) 54, 94, 1367, 1521, 1916, 2027, 2083, 2387
TaiI ACGT 5 cut(s) 256, 645, 987, 1980, 2354
TaqI TCGA 3 cut(s) 649, 1554, 1807
TasI AATT 7 cut(s) 267, 309, 1034, 1160, 2142, 2227, 2369
TatI WGTACW 2 cut(s) 832, 2316
TauI GCSGC 1 cut(s) 1238
TfiI GAWTC 4 cut(s) 166, 962, 1142, 1339
Tru1I TTAA 7 cut(s) 552, 666, 1094, 1241, 2099, 2436, 2442
Tru9I TTAA 7 cut(s) 552, 666, 1094, 1241, 2099, 2436, 2442
TscAI CASTG 7 cut(s) 99, 508, 1275, 1338, 1902, 2170, 2364
TseFI GTSAC 2 cut(s) 1063, 2359
TseI GCWGC 4 cut(s) 1956, 2379, 2464, 2474
Tsp45I GTSAC 2 cut(s) 1063, 2359
TspDTI ATGAA 8 cut(s) 733, 856, 1171, 1268, 1629, 1761, 1996, 2083
TspGWI ACGGA 4 cut(s) 173, 434, 1839, 2352
TspRI CASTG 7 cut(s) 99, 508, 1275, 1338, 1902, 2170, 2364
Van91I CCANNNNNTGG 3 cut(s) 94, 507, 1119
Vha464I CTTAAG 2 cut(s) 551, 665
VpaK11BI GGWCC 4 cut(s) 1291, 1349, 1912, 2212
XagI CCTNNNNNAGG 1 cut(s) 2408
XapI RAATTY 2 cut(s) 267, 309
XceI RCATGY 5 cut(s) 331, 406, 1120, 1455, 2115
XcmI CCANNNNNNNNNTGG 2 cut(s) 683, 2293
XmnI GAANNNNTTC 1 cut(s) 1301
XspI CTAG 8 cut(s) 213, 392, 527, 755, 1358, 1550, 1820, 2427
Zsp2I ATGCAT 1 cut(s) 1746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.