Rw0G000950

Cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00027
OG0001291
Physical Location & Seq
Reverse (-)
29305 .. 30378
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000950.1

Sequence Viewer

Length: 1074 bp
ATGTTTACCTCTTTTGCTCCATTTGAAAGCGTGCTGAGCTTAGAAACTATAGGAAACCTGGGCCTAGTTTACTACATGTTTCTGGTGGGATTAGAACTTGAACTAAAGCCGGTAATCCGTGCCGGGAAGAAGGCTCTTAGCATTGCCCTCGTAGGCATGGTGGTGGCCATCGCCAGTGGTTGGGGCTTGTTTTTTGTCCTTGACGACAACATCAAGCCTAATCTTAAGTTTCTGACAGCCCCAAATCAGCGAGACAACACACACTCAGGCCACTTGTTCTGGGCACTCGCCCTCGGCACCACAAGCTTCCCAGACGTGGCTCGACTCCTCGCAGATCTTAAGCTCCTCCACTCCGAGCTTGGACGACTTGCATTGTCATCTGCTGTCATCTCCGACCTGTGCTCGTGGTTCCTTTTCATCTTGCTACTAGCACTAACCAATCTGACGGGCCGCTTTTTGGTGGTGGGACTGGCTACCCTGGCCTTCGTATGGTTTTGTGTTTTTGTACTCCGCCCGGCTCTTCCAAAGCTGATCCGCTTCGTAACGAAAAACAAAGAGGACAAGAGAGACAACTATAATGAGCTCCATGTGAGCTTTGTTCTCATGGGGGTTCTGGTATGCGCCATGATAACTGATTCGTTAGGTACACTATCCTACGTTGGGGCTTTCGTGTTTGGAGCCATTATGCCGAGGGGAGAGCTCAGCAAATTGGTCGTAGAGAAGATCCAACCCTTTGTGACTGGGATTATGATGCCCCTTTTCTTCTTAATCGTCGGGCTACGAACCAACATGTGGTTTGTATTCAGTTCACATGATTCTTATACGCCCTTTCAATTCAAATATGCAAAGCGTTTCATGCTGGTTCTCTCCCTGGCTTTCTTACCTAAGATTGCCGGCAGTTTTGTTGCCGCTTTAATCAACAAAATGAAACCTTGGAATGCACTGGCTCTGGGAGTAGTCATGAACACCAGAGGCCTGATGGCACTCTTTATTCTCAGCACCGGCAGGGACCTAAAGGTACGTGTGTGTGTGGAAACAGTATATACGCCCACATATATAACTTATAAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

357

Amino Acids

39.75

Weight (kDa)

9.58

Isoelectric Point (pI)

19.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_H_Exchanger PF00999 9 - 340 4.3e-44 Sodium/hydrogen exchanger, transmembrane
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1065, 1072
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 2 cut(s) 180, 792
AciI CCGC 4 cut(s) 451, 511, 535, 909
AclWI GGATC 2 cut(s) 526, 718
AcoI YGGCCR 1 cut(s) 165
AfaI GTAC 3 cut(s) 507, 646, 1020
AfiI CCNNNNNNNGG 6 cut(s) 180, 316, 457, 489, 660, 792
AflII CTTAAG 2 cut(s) 224, 338
AflIII ACRYGT 3 cut(s) 75, 789, 1021
AgsI TTSAA 4 cut(s) 26, 101, 833, 838
AjiI CACGTC 1 cut(s) 316
AjnI CCWGG 3 cut(s) 57, 477, 870
AluBI AGCT 8 cut(s) 39, 306, 343, 358, 529, 583, 594, 700
AluI AGCT 8 cut(s) 39, 306, 343, 358, 529, 583, 594, 700
Alw21I GWGCWC 3 cut(s) 404, 585, 702
Alw26I GTCTC 2 cut(s) 246, 561
AlwI GGATC 2 cut(s) 526, 718
AoxI GGCC 6 cut(s) 61, 165, 268, 448, 480, 973
AspLEI GCGC 1 cut(s) 623
AspS9I GGNCC 3 cut(s) 61, 448, 1009
AsuC2I CCSGG 2 cut(s) 124, 515
AvaII GGWCC 1 cut(s) 1009
BaeGI GKGCMC 1 cut(s) 286
BaeI ACNNNNGTAYC 2 cut(s) 1010, 1043
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 2 cut(s) 585, 702
BauI CACGAG 1 cut(s) 403
Bbv12I GWGCWC 3 cut(s) 404, 585, 702
BccI CCATC 2 cut(s) 176, 973
BcgI CGANNNNNNTGC 4 cut(s) 130, 164, 694, 728
BciT130I CCWGG 3 cut(s) 59, 479, 872
BcnI CCSGG 2 cut(s) 124, 515
BcoDI GTCTC 2 cut(s) 246, 561
BfaI CTAG 2 cut(s) 65, 428
BfmI CTRYAG 1 cut(s) 48
BfrI CTTAAG 2 cut(s) 224, 338
BglII AGATCT 1 cut(s) 334
BisI GCNGC 2 cut(s) 451, 909
BlpI GCTNAGC 2 cut(s) 35, 701
BlsI GCNGC 2 cut(s) 452, 910
Bme1390I CCNGG 5 cut(s) 59, 124, 479, 515, 872
Bme18I GGWCC 1 cut(s) 1009
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 3 cut(s) 61, 448, 1009
BmiI GGNNCC 4 cut(s) 298, 410, 679, 1010
BmrFI CCNGG 5 cut(s) 59, 124, 479, 515, 872
BmrI ACTGGG 1 cut(s) 750
BmsI GCATC 1 cut(s) 741
BmuI ACTGGG 1 cut(s) 750
Bpu1102I GCTNAGC 2 cut(s) 35, 701
BpuMI CCSGG 2 cut(s) 124, 515
BsaAI YACGTR 1 cut(s) 1022
BsaJI CCNNGG 6 cut(s) 58, 292, 477, 689, 870, 932
Bsc4I CCNNNNNNNGG 6 cut(s) 180, 316, 457, 489, 660, 792
Bse118I RCCGGY 3 cut(s) 109, 893, 1001
Bse1I ACTGG 4 cut(s) 174, 474, 745, 948
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 3 cut(s) 59, 479, 872
BseDI CCNNGG 6 cut(s) 58, 292, 477, 689, 870, 932
BseLI CCNNNNNNNGG 6 cut(s) 180, 316, 457, 489, 660, 792
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 4 cut(s) 26, 279, 715, 1009
BseNI ACTGG 4 cut(s) 174, 474, 745, 948
BseRI GAGGAG 2 cut(s) 317, 335
BseSI GKGCMC 1 cut(s) 286
BshFI GGCC 6 cut(s) 63, 167, 270, 450, 482, 975
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 3 cut(s) 404, 585, 702
BsiSI CCGG 5 cut(s) 110, 123, 515, 894, 1002
BslFI GGGAC 2 cut(s) 480, 1022
BslI CCNNNNNNNGG 6 cut(s) 180, 316, 457, 489, 660, 792
BsmAI GTCTC 2 cut(s) 246, 561
BsmFI GGGAC 2 cut(s) 480, 1022
BsmI GAATGC 1 cut(s) 943
BsnI GGCC 6 cut(s) 63, 167, 270, 450, 482, 975
Bsp1286I GDGCHC 4 cut(s) 286, 404, 585, 702
Bsp143I GATC 3 cut(s) 334, 531, 723
Bsp1720I GCTNAGC 2 cut(s) 35, 701
BspACI CCGC 4 cut(s) 451, 511, 535, 909
BspANI GGCC 6 cut(s) 63, 167, 270, 450, 482, 975
BspCNI CTCAG 4 cut(s) 27, 278, 714, 1008
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 4 cut(s) 298, 410, 679, 1010
BspPI GGATC 2 cut(s) 526, 718
BspQI GCTCTTC 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 296
BspTI CTTAAG 2 cut(s) 224, 338
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 3 cut(s) 109, 893, 1001
BsrI ACTGG 4 cut(s) 174, 474, 745, 948
BssAI RCCGGY 3 cut(s) 109, 893, 1001
BssECI CCNNGG 6 cut(s) 58, 292, 477, 689, 870, 932
BssMI GATC 3 cut(s) 334, 531, 723
BssSI CACGAG 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 932
Bst2BI CACGAG 1 cut(s) 403
Bst2UI CCWGG 3 cut(s) 59, 479, 872
Bst4CI ACNGT 1 cut(s) 1039
Bst6I CTCTTC 1 cut(s) 525
BstAFI CTTAAG 2 cut(s) 224, 338
BstBAI YACGTR 1 cut(s) 1022
BstC8I GCNNGC 2 cut(s) 32, 895
BstDEI CTNAG 7 cut(s) 35, 40, 137, 265, 701, 885, 995
BstHHI GCGC 1 cut(s) 623
BstKTI GATC 3 cut(s) 337, 534, 726
BstMAI GTCTC 2 cut(s) 246, 561
BstMBI GATC 3 cut(s) 334, 531, 723
BstMWI GCNNNNNNNGC 4 cut(s) 36, 303, 479, 856
BstNI CCWGG 3 cut(s) 59, 479, 872
BstNSI RCATGY 2 cut(s) 79, 793
BstSCI CCNGG 5 cut(s) 57, 122, 477, 513, 870
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 286
BstX2I RGATCY 2 cut(s) 334, 723
BstYI RGATCY 2 cut(s) 334, 723
BsuRI GGCC 6 cut(s) 63, 167, 270, 450, 482, 975
BtgZI GCGATG 1 cut(s) 154
BtrI CACGTC 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 181, 941
Cac8I GCNNGC 2 cut(s) 32, 895
CciI TCATGA 1 cut(s) 960
CfoI GCGC 1 cut(s) 623
Cfr10I RCCGGY 3 cut(s) 109, 893, 1001
Cfr13I GGNCC 3 cut(s) 61, 448, 1009
Csp6I GTAC 3 cut(s) 506, 645, 1019
CviAII CATG 9 cut(s) 76, 157, 587, 604, 625, 790, 812, 856, 961
CviQI GTAC 3 cut(s) 506, 645, 1019
DdeI CTNAG 7 cut(s) 35, 40, 137, 265, 701, 885, 995
DpnI GATC 3 cut(s) 336, 533, 725
DpnII GATC 3 cut(s) 334, 531, 723
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
EciI GGCGGA 1 cut(s) 500
Ecl136II GAGCTC 2 cut(s) 583, 700
Eco130I CCWWGG 1 cut(s) 932
Eco147I AGGCCT 1 cut(s) 975
Eco24I GRGCYC 2 cut(s) 585, 702
Eco47I GGWCC 1 cut(s) 1009
Eco53kI GAGCTC 2 cut(s) 583, 700
EcoICRI GAGCTC 2 cut(s) 583, 700
EcoO109I RGGNCCY 1 cut(s) 1009
EcoRII CCWGG 3 cut(s) 57, 477, 870
EcoT14I CCWWGG 1 cut(s) 932
EcoT38I GRGCYC 2 cut(s) 585, 702
ErhI CCWWGG 1 cut(s) 932
FaeI CATG 9 cut(s) 79, 160, 590, 607, 628, 793, 815, 859, 964
FaqI GGGAC 2 cut(s) 480, 1022
FatI CATG 9 cut(s) 75, 156, 586, 603, 624, 789, 811, 855, 960
Fnu4HI GCNGC 2 cut(s) 451, 909
FriOI GRGCYC 2 cut(s) 585, 702
Fsp4HI GCNGC 2 cut(s) 451, 909
FspBI CTAG 2 cut(s) 65, 428
GlaI GCGC 1 cut(s) 622
GluI GCNGC 2 cut(s) 451, 909
HaeIII GGCC 6 cut(s) 63, 167, 270, 450, 482, 975
HapII CCGG 5 cut(s) 110, 123, 515, 894, 1002
HhaI GCGC 1 cut(s) 623
Hin1II CATG 9 cut(s) 79, 160, 590, 607, 628, 793, 815, 859, 964
Hin6I GCGC 1 cut(s) 621
HinP1I GCGC 1 cut(s) 621
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 3 cut(s) 324, 635, 815
HpaII CCGG 5 cut(s) 110, 123, 515, 894, 1002
Hpy166II GTNNAC 4 cut(s) 6, 70, 647, 809
Hpy188I TCNGA 4 cut(s) 234, 355, 394, 444
Hpy188III TCNNGA 1 cut(s) 961
Hpy8I GTNNAC 4 cut(s) 6, 70, 647, 809
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 2 cut(s) 124, 493
HpyCH4III ACNGT 1 cut(s) 1039
HpyCH4IV ACGT 3 cut(s) 315, 657, 1021
HpyCH4V TGCA 3 cut(s) 371, 845, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 303, 479, 856
HpyF3I CTNAG 7 cut(s) 35, 40, 137, 265, 701, 885, 995
HpySE526I ACGT 3 cut(s) 315, 657, 1021
Hsp92II CATG 9 cut(s) 79, 160, 590, 607, 628, 793, 815, 859, 964
HspAI GCGC 1 cut(s) 621
KroI GCCGGC 1 cut(s) 893
KroNI GCCGGC 1 cut(s) 895
Kzo9I GATC 3 cut(s) 334, 531, 723
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 4 cut(s) 22, 348, 588, 677
LweI GCATC 1 cut(s) 741
MaeI CTAG 2 cut(s) 65, 428
MaeII ACGT 3 cut(s) 315, 657, 1021
MaeIII GTNAC 2 cut(s) 541, 736
MalI GATC 3 cut(s) 336, 533, 725
MboI GATC 3 cut(s) 334, 531, 723
MboII GAAGA 4 cut(s) 139, 512, 733, 754
MflI RGATCY 2 cut(s) 334, 723
MhlI GDGCHC 4 cut(s) 286, 404, 585, 702
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 3 cut(s) 707, 833, 1067
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 2 cut(s) 417, 751
MnlI CCTC 8 cut(s) 19, 158, 302, 338, 356, 550, 684, 965
Mox20I TGGCCA 1 cut(s) 167
MroNI GCCGGC 1 cut(s) 893
MscI TGGCCA 1 cut(s) 167
MseI TTAA 4 cut(s) 225, 339, 767, 914
MslI CAYNNNNRTG 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 167
MspCI CTTAAG 2 cut(s) 224, 338
MspI CCGG 5 cut(s) 110, 123, 515, 894, 1002
MspR9I CCNGG 5 cut(s) 59, 124, 479, 515, 872
Mva1269I GAATGC 1 cut(s) 943
MvaI CCWGG 3 cut(s) 59, 479, 872
MwoI GCNNNNNNNGC 4 cut(s) 36, 303, 479, 856
NaeI GCCGGC 1 cut(s) 895
NciI CCSGG 2 cut(s) 124, 515
NdeII GATC 3 cut(s) 334, 531, 723
NgoMIV GCCGGC 1 cut(s) 893
NlaIII CATG 9 cut(s) 79, 160, 590, 607, 628, 793, 815, 859, 964
NlaIV GGNNCC 4 cut(s) 298, 410, 679, 1010
NmeAIII GCCGAG 2 cut(s) 273, 714
NmuCI GTSAC 1 cut(s) 736
NspI RCATGY 2 cut(s) 79, 793
PagI TCATGA 1 cut(s) 960
PceI AGGCCT 1 cut(s) 975
PciI ACATGT 2 cut(s) 75, 789
PciSI GCTCTTC 1 cut(s) 525
PctI GAATGC 1 cut(s) 943
PdiI GCCGGC 1 cut(s) 895
PfeI GAWTC 2 cut(s) 635, 815
PflMI CCANNNNNTGG 2 cut(s) 180, 792
PkrI GCNGC 2 cut(s) 452, 910
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Ppu21I YACGTR 1 cut(s) 1022
PpuMI RGGWCCY 1 cut(s) 1009
PscI ACATGT 2 cut(s) 75, 789
PsiI TTATAA 2 cut(s) 1065, 1072
Psp124BI GAGCTC 2 cut(s) 585, 702
Psp5II RGGWCCY 1 cut(s) 1009
Psp6I CCWGG 3 cut(s) 57, 477, 870
PspGI CCWGG 3 cut(s) 57, 477, 870
PspN4I GGNNCC 4 cut(s) 298, 410, 679, 1010
PspPI GGNCC 3 cut(s) 61, 448, 1009
PspPPI RGGWCCY 1 cut(s) 1009
PsuI RGATCY 2 cut(s) 334, 723
RsaI GTAC 3 cut(s) 507, 646, 1020
RsaNI GTAC 3 cut(s) 506, 645, 1019
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 2 cut(s) 585, 702
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 4 cut(s) 225, 339, 767, 914
SatI GCNGC 2 cut(s) 451, 909
Sau3AI GATC 3 cut(s) 334, 531, 723
Sau96I GGNCC 3 cut(s) 61, 448, 1009
SchI GAGTC 1 cut(s) 318
ScrFI CCNGG 5 cut(s) 59, 124, 479, 515, 872
SduI GDGCHC 4 cut(s) 286, 404, 585, 702
SfaNI GCATC 1 cut(s) 741
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 1009
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 2 cut(s) 224, 338
SmoI CTYRAG 2 cut(s) 224, 338
Sse9I AATT 3 cut(s) 707, 833, 1067
SseBI AGGCCT 1 cut(s) 975
SsiI CCGC 4 cut(s) 451, 511, 535, 909
SspMI CTAG 2 cut(s) 65, 428
SstI GAGCTC 2 cut(s) 585, 702
StuI AGGCCT 1 cut(s) 975
StyD4I CCNGG 5 cut(s) 57, 122, 477, 513, 870
StyI CCWWGG 1 cut(s) 932
TaaI ACNGT 1 cut(s) 1039
TaiI ACGT 3 cut(s) 318, 660, 1024
TaqI TCGA 1 cut(s) 322
TasI AATT 3 cut(s) 707, 833, 1067
TatI WGTACW 1 cut(s) 505
TauI GCSGC 2 cut(s) 453, 911
TfiI GAWTC 2 cut(s) 635, 815
Tru1I TTAA 4 cut(s) 225, 339, 767, 914
Tru9I TTAA 4 cut(s) 225, 339, 767, 914
TscAI CASTG 2 cut(s) 181, 948
TseFI GTSAC 1 cut(s) 736
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 4 cut(s) 406, 844, 941, 977
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 2 cut(s) 181, 948
Van91I CCANNNNNTGG 2 cut(s) 180, 792
Vha464I CTTAAG 2 cut(s) 224, 338
VpaK11BI GGWCC 1 cut(s) 1009
XceI RCATGY 2 cut(s) 79, 793
XcmI CCANNNNNNNNNTGG 2 cut(s) 356, 976
XspI CTAG 2 cut(s) 65, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.