Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

27580881 .. 27583776

Gene Structure 2896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1184600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATATTTTCGGATTTTGCAGTCTGCTTGGATGGAACCTTACCGGGGTATCATTTGCATCGCGGATATGGATCAGGAGCAAATAGTTGGCTCATTCAATTGGAGGGGGGAGGATGGTGTAACAACATTAGAACTTGTGTTTACCGAAAAACATCAAGGCGGGGATCATCAAAATACATGGAAAAACAGGTAGCATTTAGTGGAATACTGAGCAATAAAGCCCAAGAAAATCCTGATTTTTTCAACTGGAACAGAGTAAAGGTTCGTTATTGCGATGGTGCTTCTTTTACTGGGGATAGTGAACACAAGGCTAAACAACTGCAATTTAGAGGGGAGCGTATATGGTTGGCTGCAATGGAAGACTTGAAATCAAAGGGCATGCGCTACGCCAAGCAGGCTCTTCTTTCAGGTTGCTCTGCCGGAGGTCTGGCAGCTATTTTGCACTGTGATAAGTTCCGAGGCTTAATGCCAGGATATACAAAGGTGAAGTGCCTGAGTGATGCTGGATTGTTTCTTGATGCGCATGACGTTTCTGGTGGACACACACTCAGGAATTTATATAGTGGCATCGTTGGCTTGCAGGGGGTGAAACCAAATCTGCCACATTATTGCACTAATCACCTTGATCCTACTTCGTGCTTCTTCCCTCAGAACTTGATCTCCAGCGTCAAAACCCCACTGTTTATACTCAATGCAGCATATGATTCGTGGCAGATCCAGTCCAGTTTAGCTCCACCAGCGGCAGATCCTGCCGGCTACTGGCGCGATTGCAGATTAAACCATGCAAAATGTACTTCATCACAGATCAATTTTCTTCAAGGATTCAGGAATCAAATGCTGAATGCAGTAAAACGGTTCTCTATGTCTAAACAAAACGGGCTGTTTATAAATTCGTGTTTTGCGCACTGCCAATCCGAGAGGCAGGATACATGGTTTGCTGATGATTCTCCAGTTATTGGAAACAAGGCAATTGCTATAGCAGTTGGAGATTGGTATTTCGACAGAACAAGCGTGAAGGCCGTAGATTGTCCCTACCCATGTGACAATTCGTGCCACAATCTGAATTTCGAAAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

360

Amino Acids

40.0

Weight (kDa)

8.86

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	7 - 352	1.8e-168	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
Acc16I	TGCGCA	2 cut(s)	522, 903
AccB7I	CCANNNNNTGG	1 cut(s)	956
AccII	CGCG	2 cut(s)	63, 765
AciI	CCGC	3 cut(s)	63, 160, 740
AclWI	GGATC	5 cut(s)	79, 172, 620, 709, 740
AcsI	RAATTY	3 cut(s)	553, 889, 1063
AfaI	GTAC	1 cut(s)	793
AfiI	CCNNNNNNNGG	3 cut(s)	45, 759, 956
AgsI	TTSAA	4 cut(s)	98, 244, 367, 818
AjnI	CCWGG	1 cut(s)	469
AloI	GAACNNNNNNTCC	2 cut(s)	644, 676
AluBI	AGCT	3 cut(s)	434, 731, 1076
AluI	AGCT	3 cut(s)	434, 731, 1076
AlwI	GGATC	5 cut(s)	79, 172, 620, 709, 740
AlwNI	CAGNNNCTG	1 cut(s)	749
AoxI	GGCC	1 cut(s)	1017
ApeKI	GCWGC	3 cut(s)	350, 431, 695
ApoI	RAATTY	3 cut(s)	553, 889, 1063
AspLEI	GCGC	4 cut(s)	384, 523, 765, 904
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	496, 598, 611
AsuII	TTCGAA	1 cut(s)	1068
BaeI	ACNNNNGTAYC	2 cut(s)	32, 65
BbsI	GAAGAC	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	337, 443, 707
BccI	CCATC	3 cut(s)	26, 108, 269
BceAI	ACGGC	1 cut(s)	1004
BcgI	CGANNNNNNTGC	2 cut(s)	687, 721
BciT130I	CCWGG	1 cut(s)	471
BciVI	GTATCC	1 cut(s)	919
BcnI	CCSGG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	975
BfuI	GTATCC	1 cut(s)	919
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	4 cut(s)	351, 432, 696, 741
BlsI	GCNGC	4 cut(s)	352, 433, 697, 742
Bme1390I	CCNGG	2 cut(s)	45, 471
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	45, 471
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	4 cut(s)	67, 490, 508, 576
BmuI	ACTGGG	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	2 cut(s)	646, 933
Bpu14I	TTCGAA	1 cut(s)	1068
BpuMI	CCSGG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	44, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	644, 674
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 759, 956
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	6 cut(s)	251, 295, 718, 723, 764, 950
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	2 cut(s)	44, 457
BseGI	GGATG	2 cut(s)	37, 119
BseJI	GATNNNNATC	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	45, 759, 956
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	4 cut(s)	200, 485, 562, 662
BseNI	ACTGG	6 cut(s)	251, 295, 718, 723, 764, 950
BseXI	GCAGC	3 cut(s)	337, 443, 707
Bsh1236I	CGCG	2 cut(s)	63, 765
BshFI	GGCC	1 cut(s)	1019
BsiSI	CCGG	3 cut(s)	44, 420, 753
BslFI	GGGAC	1 cut(s)	1014
BslI	CCNNNNNNNGG	3 cut(s)	45, 759, 956
BsmFI	GGGAC	1 cut(s)	1014
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	1 cut(s)	1019
Bsp119I	TTCGAA	1 cut(s)	1068
Bsp143I	GATC	7 cut(s)	71, 164, 625, 657, 714, 745, 804
BspACI	CCGC	3 cut(s)	63, 160, 740
BspANI	GGCC	1 cut(s)	1019
BspCNI	CTCAG	4 cut(s)	201, 486, 561, 661
BspFNI	CGCG	2 cut(s)	63, 765
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	5 cut(s)	79, 172, 620, 709, 740
BspQI	GCTCTTC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	1068
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	6 cut(s)	251, 295, 718, 723, 764, 950
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	2 cut(s)	44, 457
BssMI	GATC	7 cut(s)	71, 164, 625, 657, 714, 745, 804
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	3 cut(s)	446, 681, 855
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstBI	TTCGAA	1 cut(s)	1068
BstC8I	GCNNGC	4 cut(s)	380, 396, 578, 754
BstDEI	CTNAG	5 cut(s)	209, 494, 548, 648, 1077
BstF5I	GGATG	2 cut(s)	37, 119
BstFNI	CGCG	2 cut(s)	63, 765
BstHHI	GCGC	4 cut(s)	384, 523, 765, 904
BstKTI	GATC	7 cut(s)	74, 167, 628, 660, 717, 748, 807
BstMBI	GATC	7 cut(s)	71, 164, 625, 657, 714, 745, 804
BstMWI	GCNNNNNNNGC	5 cut(s)	395, 573, 737, 749, 762
BstNI	CCWGG	1 cut(s)	471
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	43, 469
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	2 cut(s)	63, 765
BstV1I	GCAGC	3 cut(s)	337, 443, 707
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	2 cut(s)	714, 745
BstYI	RGATCY	2 cut(s)	714, 745
BsuI	GTATCC	1 cut(s)	919
BsuRI	GGCC	1 cut(s)	1019
BtgZI	GCGATG	2 cut(s)	44, 288
BtsCI	GGATG	2 cut(s)	37, 119
BtsI	GCAGTG	1 cut(s)	904
BtsIMutI	CAGTG	3 cut(s)	442, 677, 904
Cac8I	GCNNGC	4 cut(s)	380, 396, 578, 754
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	4 cut(s)	384, 523, 765, 904
Cfr10I	RCCGGY	1 cut(s)	752
CseI	GACGC	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	792
CviAII	CATG	6 cut(s)	178, 379, 524, 782, 930, 1038
CviQI	GTAC	1 cut(s)	792
DdeI	CTNAG	5 cut(s)	209, 494, 548, 648, 1077
DpnI	GATC	7 cut(s)	73, 166, 627, 659, 716, 747, 806
DpnII	GATC	7 cut(s)	71, 164, 625, 657, 714, 745, 804
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	469
FaeI	CATG	6 cut(s)	181, 382, 527, 785, 933, 1041
FaqI	GGGAC	1 cut(s)	1014
FatI	CATG	6 cut(s)	177, 378, 523, 781, 929, 1037
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	700
Fnu4HI	GCNGC	4 cut(s)	351, 432, 696, 741
FokI	GGATG	2 cut(s)	44, 126
Fsp4HI	GCNGC	4 cut(s)	351, 432, 696, 741
FspAI	RTGCGCAY	1 cut(s)	522
FspI	TGCGCA	2 cut(s)	522, 903
GlaI	GCGC	4 cut(s)	383, 522, 764, 903
GluI	GCNGC	4 cut(s)	351, 432, 696, 741
GsuI	CTGGAG	2 cut(s)	646, 933
HaeIII	GGCC	1 cut(s)	1019
HapII	CCGG	3 cut(s)	44, 420, 753
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	4 cut(s)	384, 523, 765, 904
Hin1II	CATG	6 cut(s)	181, 382, 527, 785, 933, 1041
Hin6I	GCGC	4 cut(s)	382, 521, 763, 902
HinP1I	GCGC	4 cut(s)	382, 521, 763, 902
HinfI	GANTC	4 cut(s)	704, 822, 829, 944
HpaII	CCGG	3 cut(s)	44, 420, 753
HphI	GGTGA	3 cut(s)	496, 598, 611
Hpy166II	GTNNAC	3 cut(s)	142, 302, 539
Hpy188I	TCNGA	5 cut(s)	13, 458, 651, 916, 1062
Hpy188III	TCNNGA	5 cut(s)	75, 233, 515, 550, 826
Hpy8I	GTNNAC	3 cut(s)	142, 302, 539
HpyAV	CCTTC	1 cut(s)	1009
HpyCH4III	ACNGT	3 cut(s)	446, 681, 855
HpyCH4IV	ACGT	1 cut(s)	528
HpyF10VI	GCNNNNNNNGC	5 cut(s)	395, 573, 737, 749, 762
HpyF3I	CTNAG	5 cut(s)	209, 494, 548, 648, 1077
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	6 cut(s)	181, 382, 527, 785, 933, 1041
HspAI	GCGC	4 cut(s)	382, 521, 763, 902
KroI	GCCGGC	1 cut(s)	752
KroNI	GCCGGC	1 cut(s)	754
Kzo9I	GATC	7 cut(s)	71, 164, 625, 657, 714, 745, 804
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	3 cut(s)	77, 334, 736
Lsp1109I	GCAGC	3 cut(s)	337, 443, 707
LweI	GCATC	4 cut(s)	67, 490, 508, 576
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	119, 1040
MalI	GATC	7 cut(s)	73, 166, 627, 659, 716, 747, 806
MboI	GATC	7 cut(s)	71, 164, 625, 657, 714, 745, 804
MboII	GAAGA	4 cut(s)	371, 392, 634, 806
MfeI	CAATTG	2 cut(s)	98, 969
MflI	RGATCY	2 cut(s)	714, 745
MluCI	AATT	8 cut(s)	98, 323, 553, 808, 889, 969, 1045, 1063
MmeI	TCCRAC	1 cut(s)	964
MnlI	CCTC	7 cut(s)	97, 104, 323, 416, 452, 657, 912
MroNI	GCCGGC	1 cut(s)	752
MseI	TTAA	2 cut(s)	464, 776
MspA1I	CMGCKG	1 cut(s)	740
MspI	CCGG	3 cut(s)	44, 420, 753
MspR9I	CCNGG	2 cut(s)	45, 471
MunI	CAATTG	2 cut(s)	98, 969
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	1 cut(s)	471
MvnI	CGCG	2 cut(s)	63, 765
MwoI	GCNNNNNNNGC	5 cut(s)	395, 573, 737, 749, 762
NaeI	GCCGGC	1 cut(s)	754
NciI	CCSGG	1 cut(s)	45
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	7 cut(s)	71, 164, 625, 657, 714, 745, 804
NgoMIV	GCCGGC	1 cut(s)	752
NlaIII	CATG	6 cut(s)	181, 382, 527, 785, 933, 1041
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	1040
NsbI	TGCGCA	2 cut(s)	522, 903
NspI	RCATGY	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	1068
PaeI	GCATGC	1 cut(s)	382
PciSI	GCTCTTC	1 cut(s)	405
PctI	GAATGC	1 cut(s)	847
PdiI	GCCGGC	1 cut(s)	754
PfeI	GAWTC	4 cut(s)	704, 822, 829, 944
PflMI	CCANNNNNTGG	1 cut(s)	956
PkrI	GCNGC	4 cut(s)	352, 433, 697, 742
PsiI	TTATAA	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	2 cut(s)	714, 745
RsaI	GTAC	1 cut(s)	793
RsaNI	GTAC	1 cut(s)	792
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	464, 776
SatI	GCNGC	4 cut(s)	351, 432, 696, 741
Sau3AI	GATC	7 cut(s)	71, 164, 625, 657, 714, 745, 804
ScrFI	CCNGG	2 cut(s)	45, 471
SfaNI	GCATC	4 cut(s)	67, 490, 508, 576
SfcI	CTRYAG	1 cut(s)	975
SfuI	TTCGAA	1 cut(s)	1068
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	8 cut(s)	98, 323, 553, 808, 889, 969, 1045, 1063
SsiI	CCGC	3 cut(s)	63, 160, 740
StyD4I	CCNGG	2 cut(s)	43, 469
TaaI	ACNGT	3 cut(s)	446, 681, 855
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	2 cut(s)	999, 1068
TasI	AATT	8 cut(s)	98, 323, 553, 808, 889, 969, 1045, 1063
TatI	WGTACW	1 cut(s)	791
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	4 cut(s)	704, 822, 829, 944
Tru1I	TTAA	2 cut(s)	464, 776
Tru9I	TTAA	2 cut(s)	464, 776
TscAI	CASTG	3 cut(s)	449, 684, 911
TseFI	GTSAC	1 cut(s)	1040
TseI	GCWGC	3 cut(s)	350, 431, 695
Tsp45I	GTSAC	1 cut(s)	1040
TspDTI	ATGAA	1 cut(s)	786
TspRI	CASTG	3 cut(s)	449, 684, 911
Van91I	CCANNNNNTGG	1 cut(s)	956
XapI	RAATTY	3 cut(s)	553, 889, 1063
XceI	RCATGY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.