Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Reverse (-)

7236420 .. 7238904

Gene Structure 2485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG089300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGTGAGGTTCTTGTGGGTTTGCATTGTAGTAGCATTTTGTTTCAGCAAATGGGTTGATGGGTTTGTGCAGTACAGTCATAGAGGAGATCCCAAAACTGAAATTATAAATAACACACTGATGGTATCGATAACCCTCATTCGAGGAGCTGGGGCCAAAGGAGCAGTCTGCTTGGATGGAACATTGCCTGCTTATTATTTTAACCGTGGACATGGGTCAGGGGCAAATAGTTGGGTCGTTCACTTTCAGACTTGGACCCTTATCGTCTCATACATCATTGCAGATTTTTACAACTGGAATAGAGTACTGATTCCCTCTTGTGATGGTGGTTCTTATTCTGGGGACAGTGAAAATAAGGAAGCACAACTACATTTTAGAGGACAGCGTATATGGTTGGCTTTCATGGAAGAGTTGATGTCATTGGGCATGCACCATGCCAAGAGGGCTCTTATTTCCGGTTGCTCTGCTGGCGGTCTGACATCTATTTTGCACTGTGATAAGTTTCGTGGCTTATTTAAAAAAAGTACTAAAGTGAAGTGCCTGAGTGATGCTGGATTTTTCCCTGACGAGGTCGATATTTCTGGTGAACCTACATTCAGGAATTTTTTTAGTGGTGTAGTAAGCTTGCAGGGGGTGAAAAAAAATCTGCCACGCTTTTGTACCAGACACCTTGACCCTACTTCGTGCTTCTTCCCGCAGAACTTAATCTCCGGAATCAAAACACCACTATTTATACTCAATTCAGCATATGACATATATCAGTTTTACGCCATTTTAGTTCCGGCATCAACAGATCCCAATGGTTTGTGGGATAATTGCAAACTAAACCTTACAAATTGTTCTCCATCTCAGTTACAAATAATGAAAGGATACAGGAACCAAATGCTGAATCTACTAAAACCAATCTCCAAGTCTAAACAAAATGGGATGTCTGTGACTTCATGTTATGCGCATTGTCAAGCTCAGTATCAAGTGATGTGGCATGCTGATAACTCTACACTTATTGGAACCAAGACAATCTCACAATCTGTCGGAGATTGGTATTTTGATCGGGCAGAAATTAAGGTGTATGATGAAGGTTGCCACTATTTGGTTCCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

367

Amino Acids

41.26

Weight (kDa)

8.67

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	38 - 83	8.9e-15	Pectinacetylesterase
PAE	PF03283	95 - 363	1.6e-106	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
Acc16I	TGCGCA	1 cut(s)	951
AccB7I	CCANNNNNTGG	1 cut(s)	1090
AccIII	TCCGGA	1 cut(s)	710
AciI	CCGC	3 cut(s)	471, 695, 1097
AclWI	GGATC	2 cut(s)	83, 788
AcsI	RAATTY	1 cut(s)	601
AfaI	GTAC	4 cut(s)	74, 306, 526, 661
AfiI	CCNNNNNNNGG	2 cut(s)	568, 1090
AloI	GAACNNNNNNTCC	2 cut(s)	692, 724
AluBI	AGCT	3 cut(s)	149, 624, 962
AluI	AGCT	3 cut(s)	149, 624, 962
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	2 cut(s)	83, 788
Aor13HI	TCCGGA	1 cut(s)	710
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	601
ArsI	GACNNNNNNTTYG	4 cut(s)	150, 182, 469, 501
AspLEI	GCGC	1 cut(s)	952
AspS9I	GGNCC	2 cut(s)	153, 255
AsuHPI	GGTGA	3 cut(s)	16, 596, 646
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	448
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BccI	CCATC	5 cut(s)	53, 115, 170, 317, 853
BciVI	GTATCC	1 cut(s)	863
BcoDI	GTCTC	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	863
BglI	GCCNNNNNGGC	1 cut(s)	443
BmcAI	AGTACT	2 cut(s)	306, 526
Bme18I	GGWCC	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 255
BmiI	GGNNCC	5 cut(s)	154, 257, 878, 1009, 1095
BmsI	GCATC	2 cut(s)	538, 794
BoxI	GACNNNNGTC	1 cut(s)	214
Bsa29I	ATCGAT	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	2 cut(s)	455, 710
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 1090
Bse1I	ACTGG	1 cut(s)	299
Bse3DI	GCAATG	2 cut(s)	182, 276
BseAI	TCCGGA	1 cut(s)	710
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	2 cut(s)	181, 933
BseLI	CCNNNNNNNGG	2 cut(s)	568, 1090
BseMI	GCAATG	2 cut(s)	182, 276
BseMII	CTCAG	3 cut(s)	533, 863, 977
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	2 cut(s)	99, 159
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	456, 711, 782
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	2 cut(s)	568, 1090
BsmAI	GTCTC	1 cut(s)	271
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	356
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp13I	TCCGGA	1 cut(s)	710
Bsp143I	GATC	3 cut(s)	88, 793, 1048
BspACI	CCGC	3 cut(s)	471, 695, 1097
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	534, 862, 976
BspDI	ATCGAT	1 cut(s)	128
BspEI	TCCGGA	1 cut(s)	710
BspLI	GGNNCC	5 cut(s)	154, 257, 878, 1009, 1095
BspPI	GGATC	2 cut(s)	83, 788
BsrDI	GCAATG	2 cut(s)	182, 276
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	3 cut(s)	88, 793, 1048
Bst4CI	ACNGT	4 cut(s)	77, 206, 347, 494
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	5 cut(s)	189, 428, 469, 626, 984
BstDEI	CTNAG	3 cut(s)	542, 849, 963
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	181, 933
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	3 cut(s)	91, 796, 1051
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	3 cut(s)	88, 793, 1048
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 443, 468
BstNSI	RCATGY	2 cut(s)	430, 986
BstPAI	GACNNNNGTC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	88, 793
BstYI	RGATCY	2 cut(s)	88, 793
Bsu15I	ATCGAT	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	863
BsuRI	GGCC	1 cut(s)	155
BsuTUI	ATCGAT	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	181, 933
BtsIMutI	CAGTG	3 cut(s)	116, 352, 490
Cac8I	GCNNGC	5 cut(s)	189, 428, 469, 626, 984
CfoI	GCGC	1 cut(s)	952
Cfr13I	GGNCC	2 cut(s)	153, 255
ClaI	ATCGAT	1 cut(s)	128
Csp6I	GTAC	4 cut(s)	73, 305, 525, 660
CspCI	CAANNNNNGTGG	2 cut(s)	959, 994
CviAII	CATG	6 cut(s)	212, 403, 427, 434, 942, 983
CviJI	RGCY	7 cut(s)	149, 155, 398, 446, 510, 624, 962
CviKI_1	RGCY	7 cut(s)	149, 155, 398, 446, 510, 624, 962
CviQI	GTAC	4 cut(s)	73, 305, 525, 660
DdeI	CTNAG	3 cut(s)	542, 849, 963
DpnI	GATC	3 cut(s)	90, 795, 1050
DpnII	GATC	3 cut(s)	88, 793, 1048
DraI	TTTAAA	1 cut(s)	517
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	448
Esp3I	CGTCTC	1 cut(s)	271
FaeI	CATG	6 cut(s)	215, 406, 430, 437, 945, 986
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	6 cut(s)	211, 402, 426, 433, 941, 982
FauI	CCCGC	1 cut(s)	702
FauNDI	CATATG	1 cut(s)	748
FokI	GGATG	2 cut(s)	188, 940
FriOI	GRGCYC	1 cut(s)	448
FspAI	RTGCGCAY	1 cut(s)	951
FspI	TGCGCA	1 cut(s)	951
GlaI	GCGC	1 cut(s)	951
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	3 cut(s)	456, 711, 782
HhaI	GCGC	1 cut(s)	952
Hin1II	CATG	6 cut(s)	215, 406, 430, 437, 945, 986
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HindIII	AAGCTT	1 cut(s)	622
HinfI	GANTC	3 cut(s)	310, 714, 889
HpaII	CCGG	3 cut(s)	456, 711, 782
HphI	GGTGA	3 cut(s)	16, 596, 646
Hpy166II	GTNNAC	3 cut(s)	209, 241, 587
Hpy188I	TCNGA	3 cut(s)	249, 477, 1034
Hpy188III	TCNNGA	2 cut(s)	598, 711
Hpy8I	GTNNAC	3 cut(s)	209, 241, 587
HpyAV	CCTTC	1 cut(s)	1070
HpyCH4III	ACNGT	4 cut(s)	77, 206, 347, 494
HpyCH4V	TGCA	7 cut(s)	24, 70, 281, 430, 490, 628, 819
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 443, 468
HpyF3I	CTNAG	3 cut(s)	542, 849, 963
Hsp92II	CATG	6 cut(s)	215, 406, 430, 437, 945, 986
HspAI	GCGC	1 cut(s)	950
Kpn2I	TCCGGA	1 cut(s)	710
Kzo9I	GATC	3 cut(s)	88, 793, 1048
LmnI	GCTCC	2 cut(s)	146, 161
LweI	GCATC	2 cut(s)	538, 794
MaeIII	GTNAC	2 cut(s)	852, 934
MalI	GATC	3 cut(s)	90, 795, 1050
MboI	GATC	3 cut(s)	88, 793, 1048
MboII	GAAGA	2 cut(s)	419, 682
MflI	RGATCY	2 cut(s)	88, 793
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	6 cut(s)	102, 601, 739, 814, 835, 1059
MmeI	TCCRAC	1 cut(s)	1012
MnlI	CCTC	7 cut(s)	77, 137, 146, 325, 371, 435, 562
MroI	TCCGGA	1 cut(s)	710
MseI	TTAA	4 cut(s)	201, 516, 704, 1062
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	3 cut(s)	456, 711, 782
MwoI	GCNNNNNNNGC	3 cut(s)	161, 443, 468
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	3 cut(s)	88, 793, 1048
NlaIII	CATG	6 cut(s)	215, 406, 430, 437, 945, 986
NlaIV	GGNNCC	5 cut(s)	154, 257, 878, 1009, 1095
NmuCI	GTSAC	1 cut(s)	934
NsbI	TGCGCA	1 cut(s)	951
NspI	RCATGY	2 cut(s)	430, 986
PaeI	GCATGC	2 cut(s)	430, 986
PfeI	GAWTC	3 cut(s)	310, 714, 889
PflFI	GACNNNGTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	1090
PshAI	GACNNNNGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	5 cut(s)	154, 257, 878, 1009, 1095
PspPI	GGNCC	2 cut(s)	153, 255
PsuI	RGATCY	2 cut(s)	88, 793
PsyI	GACNNNGTC	1 cut(s)	569
RsaI	GTAC	4 cut(s)	74, 306, 526, 661
RsaNI	GTAC	4 cut(s)	73, 305, 525, 660
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	201, 516, 704, 1062
Sau3AI	GATC	3 cut(s)	88, 793, 1048
Sau96I	GGNCC	2 cut(s)	153, 255
ScaI	AGTACT	2 cut(s)	306, 526
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	2 cut(s)	538, 794
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	119
SphI	GCATGC	2 cut(s)	430, 986
Sse9I	AATT	6 cut(s)	102, 601, 739, 814, 835, 1059
SsiI	CCGC	3 cut(s)	471, 695, 1097
TaaI	ACNGT	4 cut(s)	77, 206, 347, 494
TaqI	TCGA	3 cut(s)	128, 142, 573
TasI	AATT	6 cut(s)	102, 601, 739, 814, 835, 1059
TatI	WGTACW	3 cut(s)	72, 304, 524
TfiI	GAWTC	3 cut(s)	310, 714, 889
Tru1I	TTAA	4 cut(s)	201, 516, 704, 1062
Tru9I	TTAA	4 cut(s)	201, 516, 704, 1062
TscAI	CASTG	3 cut(s)	123, 352, 497
TseFI	GTSAC	1 cut(s)	934
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	4 cut(s)	391, 878, 930, 1089
TspRI	CASTG	3 cut(s)	123, 352, 497
Tth111I	GACNNNGTC	1 cut(s)	569
Van91I	CCANNNNNTGG	1 cut(s)	1090
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	2 cut(s)	430, 986
ZrmI	AGTACT	2 cut(s)	306, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.