Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

19050700 .. 19051623

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGGGATTTTTATAGTGGTGTAGTAAGCTTGCAGGGGGTGCAAGAAAATCTTCCGCGATTCTGTACTAGTCACCTCGATCCATCTTCGTGCTTCTTCCCCAAGAACTTAATTGTGAACATTACAACCCCGCTATTTATACTCAATTCAGCATATGATTCATGGCAGATCAATAACAGTTTAGCTCCACCATCAGCAGATCTGCACGGCGAGTGGAAGAGTTGCAGATATAACCTTGCAAGTTGTTCTGCATCACAGATGCAAATTCTTCAAGGATTCAGGAATCAAATGCTGAATGCAGTAAGAGAATTCTCAATGCGTAATCAAAATGGGATGTTCATAAATTCGTGTTTGGTGCACTGTCAAACGGAGAAAAGTGCATGGTATGCTAATGAATCTCCAGCTCTTGGAAACAAGACAATTGCAGAAGCTGTTGGAGATTGGTATTTTGATAGAGCAGAGGTTAAGGTTGTTGATGAAACTTGCCGCCATCTGGCTCTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

169

Amino Acids

19.01

Weight (kDa)

5.78

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	1 - 162	1.6e-59	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccII	CGCG	1 cut(s)	58
AciI	CCGC	3 cut(s)	56, 131, 487
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	3 cut(s)	264, 308, 343
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	407, 493
AgsI	TTSAA	1 cut(s)	272
AhlI	ACTAGT	1 cut(s)	68
AluBI	AGCT	4 cut(s)	30, 185, 404, 431
AluI	AGCT	4 cut(s)	30, 185, 404, 431
Alw21I	GWGCWC	1 cut(s)	360
Alw44I	GTGCAC	1 cut(s)	356
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	431
ApaLI	GTGCAC	1 cut(s)	356
ApoI	RAATTY	3 cut(s)	264, 308, 343
Asp700I	GAANNNNTTC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	360
BccI	CCATC	3 cut(s)	91, 199, 498
BceAI	ACGGC	1 cut(s)	223
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	1 cut(s)	69
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
BmsI	GCATC	2 cut(s)	249, 260
BpmI	CTGGAG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	407, 493
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	407, 493
BseSI	GKGCMC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	360
BslI	CCNNNNNNNGG	2 cut(s)	407, 493
BsmI	GAATGC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	79, 168, 199
BspACI	CCGC	3 cut(s)	56, 131, 487
BspFNI	CGCG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	74
BssMI	GATC	3 cut(s)	79, 168, 199
Bst4CI	ACNGT	2 cut(s)	179, 362
Bst6I	CTCTTC	1 cut(s)	212
BstAPI	GCANNNNNTGC	2 cut(s)	40, 386
BstC8I	GCNNGC	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	3 cut(s)	82, 171, 202
BstMBI	GATC	3 cut(s)	79, 168, 199
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 386
BstSLI	GKGCMC	1 cut(s)	360
BstUI	CGCG	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	32
CaiI	CAGNNNCTG	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	2 cut(s)	162, 381
CviJI	RGCY	5 cut(s)	30, 185, 404, 431, 497
CviKI_1	RGCY	5 cut(s)	30, 185, 404, 431, 497
CviQI	GTAC	1 cut(s)	66
DpnI	GATC	3 cut(s)	81, 170, 201
DpnII	GATC	3 cut(s)	79, 168, 199
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	308
FaeI	CATG	2 cut(s)	165, 384
FaiI	YATR	9 cut(s)	15, 140, 154, 156, 163, 231, 341, 382, 387
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FatI	CATG	2 cut(s)	161, 380
FauI	CCCGC	1 cut(s)	138
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	487
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	487
GsuI	CTGGAG	1 cut(s)	384
Hin1II	CATG	2 cut(s)	165, 384
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	5 cut(s)	60, 158, 276, 283, 395
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	118, 358
Hpy188III	TCNNGA	2 cut(s)	280, 500
Hpy8I	GTNNAC	2 cut(s)	118, 358
HpyCH4III	ACNGT	2 cut(s)	179, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 386
Hsp92II	CATG	2 cut(s)	165, 384
Kzo9I	GATC	3 cut(s)	79, 168, 199
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	4 cut(s)	20, 265, 414, 479
LweI	GCATC	2 cut(s)	249, 260
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	3 cut(s)	81, 170, 201
MboI	GATC	3 cut(s)	79, 168, 199
MboII	GAAGA	5 cut(s)	44, 78, 88, 229, 260
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	6 cut(s)	111, 145, 264, 308, 343, 420
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	2 cut(s)	86, 454
MroXI	GAANNNNTTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	110, 465
MslI	CAYNNNNRTG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	301
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	40, 386
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	3 cut(s)	79, 168, 199
NlaIII	CATG	2 cut(s)	165, 384
NmuCI	GTSAC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	51
PfeI	GAWTC	5 cut(s)	60, 158, 276, 283, 395
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	1 cut(s)	488
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
RseI	CAYNNNNRTG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	110, 465
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	3 cut(s)	79, 168, 199
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	8 cut(s)	32, 78, 187, 237, 406, 433, 465, 471
SfaNI	GCATC	2 cut(s)	249, 260
SmiMI	CAYNNNNRTG	1 cut(s)	88
SpeI	ACTAGT	1 cut(s)	68
Sse9I	AATT	6 cut(s)	111, 145, 264, 308, 343, 420
SsiI	CCGC	3 cut(s)	56, 131, 487
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	179, 362
TaqI	TCGA	2 cut(s)	78, 501
TasI	AATT	6 cut(s)	111, 145, 264, 308, 343, 420
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	5 cut(s)	60, 158, 276, 283, 395
Tru1I	TTAA	2 cut(s)	110, 465
Tru9I	TTAA	2 cut(s)	110, 465
TscAI	CASTG	1 cut(s)	365
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	4 cut(s)	150, 328, 408, 492
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	407
VneI	GTGCAC	1 cut(s)	356
XapI	RAATTY	3 cut(s)	264, 308, 343
XmnI	GAANNNNTTC	1 cut(s)	51
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.