Rroxscaffold_6G00420810

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
42012361 .. 42014819
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420810.1

Sequence Viewer

Length: 717 bp
ATGTTGAAGTTCTTGTGGGTTTGCATTGTAATAGCAACTTTTTTCAGCAACTGGGTCGATGGGTTTGTTCAGTACAGCCATGAAGGAGATCCCAAGACTGAAATCATTAATAACACTCTGATGGTATCACTAACCCTCATTCAAGGAGCTGATGCCAAAGGAGCAGTCTGCTTGGATGGAACATTACCTGCTTATTATTTTCATCGGGGACACGGGTCAGGGAAAAAGAGTTGGCTCGTTCACTTTCAGGCTAATAATGCTCTTGGTTTAGCCGTCTTGACCCTTTGCCTTATCATAATATATGGGATTGCAGATTTCTTCAACTGGAATAGAGTAATGCTTCCCTCTTGTGACGGTGCTTCTTTTTCTGGGGACAGTGAAAATAAGGAAGCACAACTGCAATTTAGAGGACATCGCATGTGGTTGGCTGCAATGGAAAAATTGATGTCATTGGGCATGCGCCACGCCAAGAAGGCTCTTATTTCTGGTTGCTCTGCTGGAGGTCTGACATCTATTTTGCACTGTGATAAGTTCCGGGGATTATTTCGAAGAAATACTAAAGTGAAGTGCCTCAGTGATGCTGGATTTTTCCTTGACTCAAACTGTAGTGATTTATCACAGGGGGTGAAAGAAAATCTGCCACACTTTTGTACTAGTCGCCTCGATCCTACATCGGTATTTGTTTCTCTGCATTTCCTCTTACAATGTTTAATTTGA

Protein Analysis

238

Amino Acids

26.41

Weight (kDa)

8.52

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAE PF03283 38 - 83 4.8e-16 Pectinacetylesterase
PAE PF03283 105 - 212 6.1e-44 Pectinacetylesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AclWI GGATC 2 cut(s) 83, 659
AfaI GTAC 2 cut(s) 74, 652
AgsI TTSAA 3 cut(s) 7, 143, 322
AhlI ACTAGT 1 cut(s) 653
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 2 cut(s) 83, 659
AlwNI CAGNNNCTG 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 428
ArsI GACNNNNNNTTYG 4 cut(s) 150, 182, 499, 531
AseI ATTAAT 1 cut(s) 108
AspLEI GCGC 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 536
AsuHPI GGTGA 1 cut(s) 637
AsuII TTCGAA 1 cut(s) 547
BbvI GCAGC 1 cut(s) 415
BccI CCATC 3 cut(s) 53, 115, 170
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BcnI CCSGG 1 cut(s) 536
BcuI ACTAGT 1 cut(s) 653
BfaI CTAG 1 cut(s) 654
BfmI CTRYAG 1 cut(s) 604
BfuAI ACCTGC 1 cut(s) 196
BglI GCCNNNNNGGC 1 cut(s) 473
BisI GCNGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 430
Bme1390I CCNGG 1 cut(s) 536
BmrFI CCNGG 1 cut(s) 536
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 2 cut(s) 142, 568
BmuI ACTGGG 1 cut(s) 61
BoxI GACNNNNGTC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 547
BpuMI CCSGG 1 cut(s) 536
BsaJI CCNNGG 1 cut(s) 535
Bse1I ACTGG 2 cut(s) 56, 329
Bse3DI GCAATG 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 586
BseNI ACTGG 2 cut(s) 56, 329
BseXI GCAGC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 535
BslFI GGGAC 2 cut(s) 222, 386
BsmFI GGGAC 2 cut(s) 222, 386
Bsp119I TTCGAA 1 cut(s) 547
Bsp143I GATC 2 cut(s) 88, 664
BspCNI CTCAG 1 cut(s) 585
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 2 cut(s) 83, 659
BspT104I TTCGAA 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 2 cut(s) 56, 329
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 2 cut(s) 88, 664
Bst4CI ACNGT 4 cut(s) 356, 377, 524, 605
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 1 cut(s) 572
BstF5I GGATG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 2 cut(s) 91, 667
BstMBI GATC 2 cut(s) 88, 664
BstMWI GCNNNNNNNGC 3 cut(s) 161, 257, 473
BstNSI RCATGY 2 cut(s) 421, 460
BstPAI GACNNNNGTC 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 534
BstSFI CTRYAG 1 cut(s) 604
BstV1I GCAGC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtgZI GCGATG 1 cut(s) 398
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 3 cut(s) 382, 520, 580
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 458
CaiI CAGNNNCTG 1 cut(s) 51
CfoI GCGC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 73, 651
CviAII CATG 3 cut(s) 80, 418, 457
CviJI RGCY 7 cut(s) 78, 149, 235, 251, 272, 428, 476
CviKI_1 RGCY 7 cut(s) 78, 149, 235, 251, 272, 428, 476
CviQI GTAC 2 cut(s) 73, 651
DdeI CTNAG 1 cut(s) 572
DpnI GATC 2 cut(s) 90, 666
DpnII GATC 2 cut(s) 88, 664
FaeI CATG 3 cut(s) 83, 421, 460
FaiI YATR 6 cut(s) 81, 296, 301, 303, 419, 458
FaqI GGGAC 2 cut(s) 222, 386
FatI CATG 3 cut(s) 79, 417, 456
Fnu4HI GCNGC 1 cut(s) 429
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 429
FspBI CTAG 1 cut(s) 654
GlaI GCGC 1 cut(s) 461
GluI GCNGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 519
HapII CCGG 1 cut(s) 535
HhaI GCGC 1 cut(s) 462
Hin1II CATG 3 cut(s) 83, 421, 460
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HinfI GANTC 1 cut(s) 596
HpaII CCGG 1 cut(s) 535
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 120, 507
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 77, 466
HpyCH4III ACNGT 4 cut(s) 356, 377, 524, 605
HpyCH4V TGCA 6 cut(s) 24, 311, 400, 431, 520, 691
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 257, 473
HpyF3I CTNAG 1 cut(s) 572
Hsp92II CATG 3 cut(s) 83, 421, 460
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 2 cut(s) 88, 664
LmnI GCTCC 2 cut(s) 146, 161
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 2 cut(s) 142, 568
MaeI CTAG 1 cut(s) 654
MaeIII GTNAC 1 cut(s) 350
MalI GATC 2 cut(s) 90, 666
MboI GATC 2 cut(s) 88, 664
MboII GAAGA 2 cut(s) 310, 561
MflI RGATCY 1 cut(s) 88
MluCI AATT 3 cut(s) 401, 440, 711
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 7 cut(s) 146, 355, 401, 494, 581, 671, 707
MseI TTAA 2 cut(s) 108, 710
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 1 cut(s) 535
MspR9I CCNGG 1 cut(s) 536
MwoI GCNNNNNNNGC 3 cut(s) 161, 257, 473
NciI CCSGG 1 cut(s) 536
NdeII GATC 2 cut(s) 88, 664
NlaIII CATG 3 cut(s) 83, 421, 460
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 2 cut(s) 421, 460
NspV TTCGAA 1 cut(s) 547
PaeI GCATGC 1 cut(s) 460
PkrI GCNGC 1 cut(s) 430
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
PshAI GACNNNNGTC 1 cut(s) 214
PshBI ATTAAT 1 cut(s) 108
PstNI CAGNNNCTG 1 cut(s) 51
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 2 cut(s) 74, 652
RsaNI GTAC 2 cut(s) 73, 651
RseI CAYNNNNRTG 1 cut(s) 119
SaqAI TTAA 2 cut(s) 108, 710
SatI GCNGC 1 cut(s) 429
Sau3AI GATC 2 cut(s) 88, 664
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 1 cut(s) 536
SetI ASST 3 cut(s) 151, 190, 505
SfaNI GCATC 2 cut(s) 142, 568
SfcI CTRYAG 1 cut(s) 604
SfuI TTCGAA 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 653
SphI GCATGC 1 cut(s) 460
Sse9I AATT 3 cut(s) 401, 440, 711
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 1 cut(s) 534
TaaI ACNGT 4 cut(s) 356, 377, 524, 605
TaqI TCGA 3 cut(s) 57, 547, 663
TasI AATT 3 cut(s) 401, 440, 711
TatI WGTACW 2 cut(s) 72, 650
Tru1I TTAA 2 cut(s) 108, 710
Tru9I TTAA 2 cut(s) 108, 710
TscAI CASTG 3 cut(s) 382, 527, 580
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 428
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 2 cut(s) 96, 191
TspRI CASTG 3 cut(s) 382, 527, 580
VspI ATTAAT 1 cut(s) 108
XceI RCATGY 2 cut(s) 421, 460
XspI CTAG 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.