Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

27940358 .. 27942036

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1198500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGTGAAGTTCTTGTGTGTAGGCATTGTGACAGTACTTGTTTTCATAATTTGGGCCAAAGGGTGTGCGGAGAAGAGTCTCAATGAGGTGGTACCGCCTTTGTTGAAGACCTATGGAGGAACCTCCAAGGCTGCAAATGGCATACTGATGGTAGGGCTAACCCTCATCGAAGGAGCTGCTGCCAAAGGAGTCTGCTTGGATGGAACAGTACCTGCTTATCATTTGCATCGTGGATATGGATTGGGGGCGAATAGTTGGCTCATTCACCTTCAGGGAGGAGCGCGGTGTAATGACATCAGAAGTTGCACTAACCGTAAGTATTCAGCGTATGGATCATCAACACGCATGGAAACAGAGATATCATTTACGGGAATACTAAGCAACGCAGCAGAAAAGAACCCAGGTTTTCTCCTCAAACATAATACTCAGTTGTTAAACCGATGCGTGCATCTCCTTTTTTCTGTCTTGATCCTTATCATGCTTAGGAATGGGATTGCAGATTTTTTCAACTGGAATAGAGTATTGCTTCGCTATTGTGACGGCGCTTCTTTTCTTGGGGACAGCGAAAACCAGGAAAGAAAACTGCAATTTAGAGGACAGCGAATATGGTTGTCTGCAATGGAAGATTTGATGTCCAAGGGCATGCGCGATGCAAATGAGGCTCTTCTTTCTGGTGTCTCTGCCGGCGGTCTGTTATCCATTTTGCACTGTGATGAGTTTCGGGGCTTATTTCTCACAGCTACAAAAGTGAAGTGCCTGAGTGATGGTGGATTTTTTCTCGACGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

264

Amino Acids

28.78

Weight (kDa)

8.72

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	49 - 137	8.6e-32	Pectinacetylesterase
PAE	PF03283	167 - 262	3.5e-42	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
Acc65I	GGTACC	1 cut(s)	91
AccB1I	GGYRCC	1 cut(s)	91
AccII	CGCG	2 cut(s)	283, 648
AciI	CCGC	4 cut(s)	68, 95, 283, 687
AclWI	GGATC	2 cut(s)	340, 463
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	3 cut(s)	36, 93, 210
AgsI	TTSAA	2 cut(s)	106, 508
AjnI	CCWGG	2 cut(s)	400, 570
AluBI	AGCT	2 cut(s)	176, 740
AluI	AGCT	2 cut(s)	176, 740
Alw26I	GTCTC	2 cut(s)	83, 682
AlwI	GGATC	2 cut(s)	340, 463
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	4 cut(s)	131, 176, 179, 386
Asp718I	GGTACC	1 cut(s)	91
AspLEI	GCGC	3 cut(s)	283, 545, 648
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	16, 257
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	4 cut(s)	118, 163, 166, 398
BccI	CCATC	3 cut(s)	142, 194, 758
BceAI	ACGGC	1 cut(s)	556
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	2 cut(s)	402, 572
BcoDI	GTCTC	2 cut(s)	83, 682
BfoI	RGCGCY	1 cut(s)	546
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	4 cut(s)	132, 177, 180, 387
BlsI	GCNGC	4 cut(s)	133, 178, 181, 388
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	2 cut(s)	402, 572
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	93, 121
BmrFI	CCNGG	2 cut(s)	402, 572
BmsI	GCATC	4 cut(s)	235, 431, 457, 640
BpiI	GAAGAC	1 cut(s)	113
Bpu10I	CCTNAGC	1 cut(s)	482
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	126, 400, 636
Bse118I	RCCGGY	1 cut(s)	683
Bse1I	ACTGG	1 cut(s)	515
Bse3DI	GCAATG	1 cut(s)	624
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	402, 572
BseDI	CCNNGG	3 cut(s)	126, 400, 636
BseGI	GGATG	1 cut(s)	205
BseJI	GATNNNNATC	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	2 cut(s)	440, 749
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	2 cut(s)	291, 401
BseXI	GCAGC	4 cut(s)	118, 163, 166, 398
Bsh1236I	CGCG	2 cut(s)	283, 648
BshFI	GGCC	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	684
BslFI	GGGAC	1 cut(s)	572
BsmAI	GTCTC	2 cut(s)	83, 682
BsmFI	GGGAC	1 cut(s)	572
BsnI	GGCC	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	332, 468
BspACI	CCGC	4 cut(s)	68, 95, 283, 687
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	439, 750
BspFNI	CGCG	2 cut(s)	283, 648
BspLI	GGNNCC	2 cut(s)	93, 121
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	2 cut(s)	340, 463
BspQI	GCTCTTC	1 cut(s)	669
BspT107I	GGYRCC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	683
BssECI	CCNNGG	3 cut(s)	126, 400, 636
BssMI	GATC	2 cut(s)	332, 468
BssT1I	CCWWGG	2 cut(s)	126, 636
Bst2UI	CCWGG	2 cut(s)	402, 572
Bst4CI	ACNGT	4 cut(s)	34, 208, 314, 710
Bst6I	CTCTTC	2 cut(s)	68, 669
BstC8I	GCNNGC	3 cut(s)	446, 644, 685
BstDEI	CTNAG	4 cut(s)	377, 426, 482, 758
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	2 cut(s)	283, 648
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	3 cut(s)	283, 545, 648
BstKTI	GATC	2 cut(s)	335, 471
BstMAI	GTCTC	2 cut(s)	83, 682
BstMBI	GATC	2 cut(s)	332, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNI	CCWGG	2 cut(s)	402, 572
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	400, 570
BstUI	CGCG	2 cut(s)	283, 648
BstV1I	GCAGC	4 cut(s)	118, 163, 166, 398
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	663
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	706
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	3 cut(s)	446, 644, 685
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	3 cut(s)	283, 545, 648
Cfr10I	RCCGGY	1 cut(s)	683
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	35, 92, 209
CviAII	CATG	3 cut(s)	346, 478, 643
CviJI	RGCY	8 cut(s)	56, 131, 157, 176, 259, 662, 726, 740
CviKI_1	RGCY	8 cut(s)	56, 131, 157, 176, 259, 662, 726, 740
CviQI	GTAC	3 cut(s)	35, 92, 209
DdeI	CTNAG	4 cut(s)	377, 426, 482, 758
DpnI	GATC	2 cut(s)	334, 470
DpnII	GATC	2 cut(s)	332, 468
Eam1104I	CTCTTC	2 cut(s)	68, 669
EarI	CTCTTC	2 cut(s)	68, 669
Eco130I	CCWWGG	2 cut(s)	126, 636
Eco32I	GATATC	1 cut(s)	360
Eco57I	CTGAAG	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	400, 570
EcoRV	GATATC	1 cut(s)	360
EcoT14I	CCWWGG	2 cut(s)	126, 636
ErhI	CCWWGG	2 cut(s)	126, 636
FaeI	CATG	3 cut(s)	349, 481, 646
FaqI	GGGAC	1 cut(s)	572
FatI	CATG	3 cut(s)	345, 477, 642
Fnu4HI	GCNGC	4 cut(s)	132, 177, 180, 387
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	132, 177, 180, 387
GlaI	GCGC	3 cut(s)	282, 544, 647
GluI	GCNGC	4 cut(s)	132, 177, 180, 387
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	684
HhaI	GCGC	3 cut(s)	283, 545, 648
Hin1II	CATG	3 cut(s)	349, 481, 646
Hin6I	GCGC	3 cut(s)	281, 543, 646
HinP1I	GCGC	3 cut(s)	281, 543, 646
HinfI	GANTC	2 cut(s)	76, 189
HpaII	CCGG	1 cut(s)	684
HphI	GGTGA	2 cut(s)	16, 257
Hpy188I	TCNGA	1 cut(s)	299
Hpy188III	TCNNGA	2 cut(s)	466, 779
Hpy99I	CGWCG	1 cut(s)	785
HpyAV	CCTTC	2 cut(s)	164, 278
HpyCH4III	ACNGT	4 cut(s)	34, 208, 314, 710
HpyCH4V	TGCA	9 cut(s)	134, 226, 306, 448, 497, 586, 617, 653, 706
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	4 cut(s)	377, 426, 482, 758
Hsp92II	CATG	3 cut(s)	349, 481, 646
HspAI	GCGC	3 cut(s)	281, 543, 646
KpnI	GGTACC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	683
KroNI	GCCGGC	1 cut(s)	685
Kzo9I	GATC	2 cut(s)	332, 468
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	2 cut(s)	173, 278
Lsp1109I	GCAGC	4 cut(s)	118, 163, 166, 398
LweI	GCATC	4 cut(s)	235, 431, 457, 640
MaeIII	GTNAC	2 cut(s)	28, 536
MalI	GATC	2 cut(s)	334, 470
MboI	GATC	2 cut(s)	332, 468
MboII	GAAGA	4 cut(s)	85, 118, 635, 656
MluCI	AATT	3 cut(s)	48, 587, 787
MlyI	GAGTC	2 cut(s)	85, 198
MnlI	CCTC	8 cut(s)	79, 110, 133, 173, 269, 422, 587, 652
MroNI	GCCGGC	1 cut(s)	683
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	146, 711
MspI	CCGG	1 cut(s)	684
MspR9I	CCNGG	2 cut(s)	402, 572
MvaI	CCWGG	2 cut(s)	402, 572
MvnI	CGCG	2 cut(s)	283, 648
MwoI	GCNNNNNNNGC	1 cut(s)	659
NaeI	GCCGGC	1 cut(s)	685
NdeII	GATC	2 cut(s)	332, 468
NgoMIV	GCCGGC	1 cut(s)	683
NlaIII	CATG	3 cut(s)	349, 481, 646
NlaIV	GGNNCC	2 cut(s)	93, 121
NmuCI	GTSAC	2 cut(s)	28, 536
NspI	RCATGY	1 cut(s)	646
PaeI	GCATGC	1 cut(s)	646
PciSI	GCTCTTC	1 cut(s)	669
PdiI	GCCGGC	1 cut(s)	685
PkrI	GCNGC	4 cut(s)	133, 178, 181, 388
PleI	GAGTC	2 cut(s)	84, 197
PpsI	GAGTC	2 cut(s)	84, 197
Psp6I	CCWGG	2 cut(s)	400, 570
PspGI	CCWGG	2 cut(s)	400, 570
PspN4I	GGNNCC	2 cut(s)	93, 121
PspPI	GGNCC	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	3 cut(s)	36, 93, 210
RsaNI	GTAC	3 cut(s)	35, 92, 209
RseI	CAYNNNNRTG	2 cut(s)	146, 711
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	4 cut(s)	132, 177, 180, 387
Sau3AI	GATC	2 cut(s)	332, 468
Sau96I	GGNCC	1 cut(s)	54
ScaI	AGTACT	1 cut(s)	36
SchI	GAGTC	2 cut(s)	85, 198
ScrFI	CCNGG	2 cut(s)	402, 572
SetI	ASST	8 cut(s)	90, 113, 125, 178, 214, 270, 406, 742
SfaNI	GCATC	4 cut(s)	235, 431, 457, 640
SmiMI	CAYNNNNRTG	2 cut(s)	146, 711
SphI	GCATGC	1 cut(s)	646
Sse9I	AATT	3 cut(s)	48, 587, 787
SsiI	CCGC	4 cut(s)	68, 95, 283, 687
StyD4I	CCNGG	2 cut(s)	400, 570
StyI	CCWWGG	2 cut(s)	126, 636
TaaI	ACNGT	4 cut(s)	34, 208, 314, 710
TaqI	TCGA	2 cut(s)	168, 780
TasI	AATT	3 cut(s)	48, 587, 787
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	713
TseFI	GTSAC	2 cut(s)	28, 536
TseI	GCWGC	4 cut(s)	131, 176, 179, 386
Tsp45I	GTSAC	2 cut(s)	28, 536
TspDTI	ATGAA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	713
XceI	RCATGY	1 cut(s)	646
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.