Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Reverse (-)

7265044 .. 7267602

Gene Structure 2559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTGAGGTTCTTGTGGGTTTGCATTGTAGTAGCATTTTGTTTCAGCAAATGGGTTGATGGGTTTGTGCAGTACAGTCATAGAGGAGATCCCAAAACTGAAATTATAAATAACACACTGATGGTATCGATAACCCTCATTCGAGGAGCTGAGGCCAAAGGAGCAGTCTGCTTGGATGGAACGTTGCCTGCTTATTATTTTAACCGTGGACATGGGTCAGGGGCAAATAGTTGGGTCGTTCACTTTCAGGGTGGAGGATGGTGTAGCAACATCACAGAATGTGTTGCTCGCACAAAAACTCAGTTTGGATCATCAAGATACATGTTACCAGAGACGGGGTTCACTGGAATATTAAGCTTCAAAGCTGAAGAAAATCCAGATTTTTTCAACTGGAATAGAGTACTGATTCCCTCTTGTGATGGTGCTTCTTATTCTGGGGACAGTGAAAATAAGGAAGCACAACTACATTTTAGAGGACAGCGTATATGGTTGACTTTCATGGAAGAGTTGATGTCATTGGGCATGCGCCATGCCAAGAGGGCTCTTATTTCTGGTTGCTCTGCTGGCGGTCTGACATCTATTTTGCCCTGTGATAAGTTTCGTGGCTTATTTAAAAAAACTACTAAAGTGAAGTGCCTGAGTGATGCTGGATTTTTCCCTGACGAGGTCGATATTTCTGGTGAACCTACATTCAGAAATTTTTTTAGTGGTGTAGTAAGCTTGCAGGGGGTGAAAAAAAATCTGCCACGCTTTTGTACTAGACACCTTGACCCTACTTCGTGCTTCTTCCCTCAGAACTTAATCTCCGGAATCAAAACACCACTATTTATACTCAATTCAGCATATGACATATATCAGTTTTATGCCATTTTAGTTCCGGCATCAACAGATCCCAATGGTTTGTGGGATAATTGCAAACTAAACCTTACAAATTGTTCTCCATCTCAGTTACAAATAATGAAAGGATACAGGAACCAAATGCTGAATCTACTAAAACCAATCTCCAAGTCTAAACAAAATGGGATGTCTGTGACTTCATGTTATGCGCATTGTCAAGCTCAGTATCAAGTGATGTGGCATGCTGATAACTCTACACTTATTGGAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

370

Amino Acids

41.34

Weight (kDa)

8.9

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	38 - 367	2e-139	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
Acc16I	TGCGCA	1 cut(s)	1047
AccIII	TCCGGA	1 cut(s)	806
AciI	CCGC	1 cut(s)	567
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	3 cut(s)	83, 316, 884
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	3 cut(s)	74, 402, 757
AfiI	CCNNNNNNNGG	2 cut(s)	335, 664
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	361, 388
AloI	GAACNNNNNNTCC	2 cut(s)	788, 820
AluBI	AGCT	5 cut(s)	149, 357, 365, 720, 1058
AluI	AGCT	5 cut(s)	149, 357, 365, 720, 1058
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	3 cut(s)	83, 316, 884
Aor13HI	TCCGGA	1 cut(s)	806
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	4 cut(s)	150, 182, 565, 597
AspLEI	GCGC	2 cut(s)	528, 1048
AsuHPI	GGTGA	3 cut(s)	16, 692, 742
BanII	GRGCYC	1 cut(s)	544
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbvCI	CCTCAGC	1 cut(s)	150
BccI	CCATC	6 cut(s)	53, 115, 170, 252, 413, 949
BciVI	GTATCC	1 cut(s)	959
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	1 cut(s)	759
BfuI	GTATCC	1 cut(s)	959
BglI	GCCNNNNNGGC	1 cut(s)	539
BmcAI	AGTACT	1 cut(s)	402
BmiI	GGNNCC	2 cut(s)	974, 1105
BmsI	GCATC	2 cut(s)	634, 890
BoxI	GACNNNNGTC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	806
BsaXI	ACNNNNNCTCC	2 cut(s)	788, 818
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 664
Bse1I	ACTGG	2 cut(s)	349, 395
BseAI	TCCGGA	1 cut(s)	806
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	3 cut(s)	181, 263, 1029
BseLI	CCNNNNNNNGG	2 cut(s)	335, 664
BseMII	CTCAG	6 cut(s)	141, 314, 629, 806, 959, 1073
BseNI	ACTGG	2 cut(s)	349, 395
BseRI	GAGGAG	2 cut(s)	99, 159
BsgI	GTGCAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	155
BshVI	ATCGAT	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	807, 878
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	335, 664
BsmAI	GTCTC	1 cut(s)	326
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp13I	TCCGGA	1 cut(s)	806
Bsp143I	GATC	3 cut(s)	88, 308, 889
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	6 cut(s)	142, 313, 630, 805, 958, 1072
BspDI	ATCGAT	1 cut(s)	128
BspEI	TCCGGA	1 cut(s)	806
BspLI	GGNNCC	2 cut(s)	974, 1105
BspPI	GGATC	3 cut(s)	83, 316, 884
BsrI	ACTGG	2 cut(s)	349, 395
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	3 cut(s)	88, 308, 889
Bst4CI	ACNGT	3 cut(s)	77, 206, 443
Bst6I	CTCTTC	1 cut(s)	498
BstC8I	GCNNGC	6 cut(s)	189, 289, 524, 565, 722, 1080
BstDEI	CTNAG	6 cut(s)	150, 300, 638, 792, 945, 1059
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	3 cut(s)	181, 263, 1029
BstHHI	GCGC	2 cut(s)	528, 1048
BstKTI	GATC	3 cut(s)	91, 311, 892
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	3 cut(s)	88, 308, 889
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 539, 564
BstNSI	RCATGY	3 cut(s)	325, 526, 1082
BstPAI	GACNNNNGTC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	88, 889
BstYI	RGATCY	2 cut(s)	88, 889
Bsu15I	ATCGAT	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	959
BsuRI	GGCC	1 cut(s)	155
BsuTUI	ATCGAT	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	181, 263, 1029
BtsIMutI	CAGTG	3 cut(s)	116, 342, 448
Cac8I	GCNNGC	6 cut(s)	189, 289, 524, 565, 722, 1080
CfoI	GCGC	2 cut(s)	528, 1048
ClaI	ATCGAT	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	73, 401, 756
CspCI	CAANNNNNGTGG	2 cut(s)	1055, 1090
CviAII	CATG	7 cut(s)	212, 322, 499, 523, 530, 1038, 1079
CviJI	RGCY	8 cut(s)	149, 155, 357, 365, 542, 606, 720, 1058
CviKI_1	RGCY	8 cut(s)	149, 155, 357, 365, 542, 606, 720, 1058
CviQI	GTAC	3 cut(s)	73, 401, 756
DdeI	CTNAG	6 cut(s)	150, 300, 638, 792, 945, 1059
DpnI	GATC	3 cut(s)	90, 310, 891
DpnII	GATC	3 cut(s)	88, 308, 889
DraI	TTTAAA	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	7 cut(s)	215, 325, 502, 526, 533, 1041, 1082
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	7 cut(s)	211, 321, 498, 522, 529, 1037, 1078
FauNDI	CATATG	1 cut(s)	844
FokI	GGATG	3 cut(s)	188, 270, 1036
FriOI	GRGCYC	1 cut(s)	544
FspAI	RTGCGCAY	1 cut(s)	1047
FspBI	CTAG	1 cut(s)	759
FspI	TGCGCA	1 cut(s)	1047
GlaI	GCGC	2 cut(s)	527, 1047
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	807, 878
HhaI	GCGC	2 cut(s)	528, 1048
Hin1II	CATG	7 cut(s)	215, 325, 502, 526, 533, 1041, 1082
Hin6I	GCGC	2 cut(s)	526, 1046
HinP1I	GCGC	2 cut(s)	526, 1046
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	2 cut(s)	355, 718
HinfI	GANTC	3 cut(s)	406, 810, 985
HpaII	CCGG	2 cut(s)	807, 878
HphI	GGTGA	3 cut(s)	16, 692, 742
Hpy166II	GTNNAC	5 cut(s)	209, 241, 342, 492, 683
Hpy188I	TCNGA	3 cut(s)	573, 695, 795
Hpy188III	TCNNGA	3 cut(s)	315, 377, 807
Hpy8I	GTNNAC	5 cut(s)	209, 241, 342, 492, 683
HpyCH4III	ACNGT	3 cut(s)	77, 206, 443
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	24, 70, 724, 915
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 539, 564
HpyF3I	CTNAG	6 cut(s)	150, 300, 638, 792, 945, 1059
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	7 cut(s)	215, 325, 502, 526, 533, 1041, 1082
HspAI	GCGC	2 cut(s)	526, 1046
Kpn2I	TCCGGA	1 cut(s)	806
Kzo9I	GATC	3 cut(s)	88, 308, 889
LmnI	GCTCC	2 cut(s)	146, 161
LweI	GCATC	2 cut(s)	634, 890
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	3 cut(s)	324, 948, 1030
MalI	GATC	3 cut(s)	90, 310, 891
MboI	GATC	3 cut(s)	88, 308, 889
MboII	GAAGA	3 cut(s)	380, 515, 778
MflI	RGATCY	2 cut(s)	88, 889
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	5 cut(s)	102, 697, 835, 910, 931
MroI	TCCGGA	1 cut(s)	806
MseI	TTAA	4 cut(s)	201, 353, 612, 800
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	2 cut(s)	807, 878
MwoI	GCNNNNNNNGC	3 cut(s)	161, 539, 564
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	3 cut(s)	88, 308, 889
NlaIII	CATG	7 cut(s)	215, 325, 502, 526, 533, 1041, 1082
NlaIV	GGNNCC	2 cut(s)	974, 1105
NmuCI	GTSAC	1 cut(s)	1030
NsbI	TGCGCA	1 cut(s)	1047
NspI	RCATGY	3 cut(s)	325, 526, 1082
PaeI	GCATGC	2 cut(s)	526, 1082
PciI	ACATGT	1 cut(s)	321
PfeI	GAWTC	3 cut(s)	406, 810, 985
PflFI	GACNNNGTC	1 cut(s)	665
PscI	ACATGT	1 cut(s)	321
PshAI	GACNNNNGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	107
Psp1406I	AACGTT	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	974, 1105
PsuI	RGATCY	2 cut(s)	88, 889
PsyI	GACNNNGTC	1 cut(s)	665
RsaI	GTAC	3 cut(s)	74, 402, 757
RsaNI	GTAC	3 cut(s)	73, 401, 756
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	201, 353, 612, 800
Sau3AI	GATC	3 cut(s)	88, 308, 889
ScaI	AGTACT	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	2 cut(s)	634, 890
SmiMI	CAYNNNNRTG	1 cut(s)	119
SphI	GCATGC	2 cut(s)	526, 1082
Sse9I	AATT	5 cut(s)	102, 697, 835, 910, 931
SsiI	CCGC	1 cut(s)	567
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	1 cut(s)	759
TaaI	ACNGT	3 cut(s)	77, 206, 443
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	3 cut(s)	128, 142, 669
TasI	AATT	5 cut(s)	102, 697, 835, 910, 931
TatI	WGTACW	3 cut(s)	72, 400, 755
TfiI	GAWTC	3 cut(s)	406, 810, 985
Tru1I	TTAA	4 cut(s)	201, 353, 612, 800
Tru9I	TTAA	4 cut(s)	201, 353, 612, 800
TscAI	CASTG	3 cut(s)	123, 349, 448
TseFI	GTSAC	1 cut(s)	1030
Tsp45I	GTSAC	1 cut(s)	1030
TspDTI	ATGAA	3 cut(s)	487, 974, 1026
TspRI	CASTG	3 cut(s)	123, 349, 448
Tth111I	GACNNNGTC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	3 cut(s)	325, 526, 1082
XspI	CTAG	1 cut(s)	759
ZrmI	AGTACT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.