Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

42323290 .. 42325907

Gene Structure 2618 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025138

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTTGAAGTTCTTGTGGGTTTGCATTGTAATAGCAACTTTTTTCAGCAACTGGGTTGATGGGTTTGTTCAGTACAGCCATGAAGGAGATCCCAAGACTGAAATCATTAATAACACTCTGATGGTATCACTAACCCTTATTCAAGGAGCTGATGCCAAAGGAGCAGTTTGCTTGGATGGAACATTACCCGCTTATTATTTTCATCGGGGACACGGGTCAGGGGAAAAGAGTTGGCTCGTTCACTTTCAGGGAGGAGGATGGTGTGGCAACATCACGGATTGTGTTGCTCGCAAGAAAACGCAGTTCGGATCATCAAATTTCATGCTACCAGAGACAGGATTCACCGGAATACTAAGCTATAAAGCTGAAGAAAATCCAGATTTCTTCAACTGGAATAGAGTAATGCTTCCCTCTTGTGACGGTGCTTCTTTTTCTGGGGACAGTGAAAATAAGGAAGCACAACTGCAATTTAGAGGACATCGCATTTGGTTGGCTGCAATGGAAAAATTGATGTCATTGGGCATGCGCCACGCCAAGAAGGCTCTTATTTCTGGTTGCTCTGCTGGAGGTCTGACATCTATTTTGCACTGTGATAAGTTCCGGGGATTATTTCAAAGAAATACTAAAGTGAAGTGCCTCAGTGATGCTGGATTTTTCCTTGACTCGGTTGACATATCTGGTGCACCAACATTCAGGAATTTTTTCAGTAATGTTGTAAGCTTGCAGGGGGTGAAAGAAAATCTGCCACACTTATGTACTAGTCGCCTCGATCCTACTTCATGCTTCTTCCCTCAGAACTTACTCGCCGGCATTAAAACCCCGCTGTTTATACTTAACTCAGCATATGATTCTTTTCAGTTCCAATTCAGCTTAGTTCCAGCATCAGCTGATCCCAACGGCTTATGGAACAGTTGCAAATTAAACGTTACCAACTGTTCCCCAACTCAGTTGCATATTCTGCAAGGATTCAGGAGTCAAATGCTACAGGCACTAAAGCCATTCTCAAATTCTAATCAAAATGGGATGTTTATAGATTCATGCTATGCACACTGTCAGTCTCAGTTTCAGCTAACGTGGTATGCTGCCAATTCTACAATCATTGGAAACAAGACAATCTCACAGTCCGTCGGAGATTGGTATTTCGATCGTGCAGAAGTTAAGGTCGTTGATAAAAGTTGCCGCCATTTGGTTCCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

400

Amino Acids

44.37

Weight (kDa)

8.31

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	38 - 393	1.4e-154	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	189, 821, 1180
AclI	AACGTT	1 cut(s)	924
AclWI	GGATC	4 cut(s)	83, 316, 764, 884
AcsI	RAATTY	3 cut(s)	316, 697, 1006
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	74, 757
AfiI	CCNNNNNNNGG	3 cut(s)	335, 664, 1186
AgsI	TTSAA	4 cut(s)	7, 143, 388, 614
AhlI	ACTAGT	1 cut(s)	758
AluBI	AGCT	7 cut(s)	149, 357, 365, 720, 870, 887, 1069
AluI	AGCT	7 cut(s)	149, 357, 365, 720, 870, 887, 1069
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	2 cut(s)	326, 1062
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	4 cut(s)	83, 316, 764, 884
AlwNI	CAGNNNCTG	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	2 cut(s)	494, 1082
ApoI	RAATTY	3 cut(s)	316, 697, 1006
ArsI	GACNNNNNNTTYG	4 cut(s)	468, 500, 565, 597
AseI	ATTAAT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	528
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	2 cut(s)	334, 742
BaeGI	GKGCMC	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	2 cut(s)	481, 1069
BccI	CCATC	4 cut(s)	53, 115, 170, 252
BceAI	ACGGC	1 cut(s)	913
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	2 cut(s)	326, 1062
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	1 cut(s)	759
BfmI	CTRYAG	1 cut(s)	983
BglI	GCCNNNNNGGC	1 cut(s)	539
BisI	GCNGC	3 cut(s)	495, 1083, 1180
BlsI	GCNGC	3 cut(s)	496, 1084, 1181
Bme1390I	CCNGG	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	1191
BmrFI	CCNGG	1 cut(s)	602
BmrI	ACTGGG	1 cut(s)	61
BmsI	GCATC	3 cut(s)	142, 634, 890
BmuI	ACTGGG	1 cut(s)	61
BoxI	GACNNNNGTC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	601
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 664, 1186
Bse118I	RCCGGY	1 cut(s)	806
Bse1I	ACTGG	2 cut(s)	56, 395
Bse3DI	GCAATG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	601
BseGI	GGATG	3 cut(s)	181, 263, 1029
BseLI	CCNNNNNNNGG	3 cut(s)	335, 664, 1186
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	5 cut(s)	652, 806, 852, 959, 1073
BseNI	ACTGG	2 cut(s)	56, 395
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	685
BseXI	GCAGC	2 cut(s)	481, 1069
BsgI	GTGCAG	1 cut(s)	1170
Bsh1285I	CGRYCG	1 cut(s)	1147
BsiEI	CGRYCG	1 cut(s)	1147
BsiHKAI	GWGCWC	1 cut(s)	685
BsiSI	CCGG	3 cut(s)	345, 601, 807
BslFI	GGGAC	2 cut(s)	222, 452
BslI	CCNNNNNNNGG	3 cut(s)	335, 664, 1186
BsmAI	GTCTC	2 cut(s)	326, 1062
BsmFI	GGGAC	2 cut(s)	222, 452
Bsp1286I	GDGCHC	1 cut(s)	685
Bsp143I	GATC	5 cut(s)	88, 308, 769, 889, 1144
BspACI	CCGC	3 cut(s)	189, 821, 1180
BspCNI	CTCAG	5 cut(s)	651, 805, 851, 958, 1072
BspLI	GGNNCC	1 cut(s)	1191
BspPI	GGATC	4 cut(s)	83, 316, 764, 884
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	1 cut(s)	806
BsrI	ACTGG	2 cut(s)	56, 395
BssAI	RCCGGY	1 cut(s)	806
BssECI	CCNNGG	1 cut(s)	601
BssMI	GATC	5 cut(s)	88, 308, 769, 889, 1144
Bst4CI	ACNGT	7 cut(s)	422, 443, 590, 911, 935, 1052, 1122
BstAPI	GCANNNNNTGC	1 cut(s)	958
BstC8I	GCNNGC	4 cut(s)	289, 524, 722, 808
BstDEI	CTNAG	7 cut(s)	353, 638, 792, 838, 871, 945, 1059
BstF5I	GGATG	3 cut(s)	181, 263, 1029
BstHHI	GCGC	1 cut(s)	528
BstKTI	GATC	5 cut(s)	91, 311, 772, 892, 1147
BstMAI	GTCTC	2 cut(s)	326, 1062
BstMBI	GATC	5 cut(s)	88, 308, 769, 889, 1144
BstMCI	CGRYCG	1 cut(s)	1147
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 539, 958
BstNSI	RCATGY	1 cut(s)	526
BstPAI	GACNNNNGTC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	600
BstSFI	CTRYAG	1 cut(s)	983
BstSLI	GKGCMC	1 cut(s)	685
BstV1I	GCAGC	2 cut(s)	481, 1069
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	464
BtsCI	GGATG	3 cut(s)	181, 263, 1029
BtsIMutI	CAGTG	4 cut(s)	448, 586, 646, 1048
Cac8I	GCNNGC	4 cut(s)	289, 524, 722, 808
CaiI	CAGNNNCTG	1 cut(s)	51
CfoI	GCGC	1 cut(s)	528
Cfr10I	RCCGGY	1 cut(s)	806
Csp6I	GTAC	2 cut(s)	73, 756
CviAII	CATG	5 cut(s)	80, 322, 523, 780, 1038
CviQI	GTAC	2 cut(s)	73, 756
DdeI	CTNAG	7 cut(s)	353, 638, 792, 838, 871, 945, 1059
DpnI	GATC	5 cut(s)	90, 310, 771, 891, 1146
DpnII	GATC	5 cut(s)	88, 308, 769, 889, 1144
Eco57I	CTGAAG	1 cut(s)	387
FaeI	CATG	5 cut(s)	83, 325, 526, 783, 1041
FaqI	GGGAC	2 cut(s)	222, 452
FatI	CATG	5 cut(s)	79, 321, 522, 779, 1037
FauI	CCCGC	2 cut(s)	196, 828
FauNDI	CATATG	1 cut(s)	844
Fnu4HI	GCNGC	3 cut(s)	495, 1083, 1180
FokI	GGATG	3 cut(s)	188, 270, 1036
Fsp4HI	GCNGC	3 cut(s)	495, 1083, 1180
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	3 cut(s)	495, 1083, 1180
GsuI	CTGGAG	1 cut(s)	585
HapII	CCGG	3 cut(s)	345, 601, 807
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	5 cut(s)	83, 325, 526, 783, 1041
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	718
HinfI	GANTC	6 cut(s)	339, 662, 848, 966, 973, 1034
HpaII	CCGG	3 cut(s)	345, 601, 807
HphI	GGTGA	2 cut(s)	334, 742
Hpy166II	GTNNAC	3 cut(s)	241, 670, 683
Hpy188I	TCNGA	5 cut(s)	120, 308, 573, 795, 1130
Hpy188III	TCNNGA	3 cut(s)	377, 694, 970
Hpy8I	GTNNAC	3 cut(s)	241, 670, 683
Hpy99I	CGWCG	1 cut(s)	1130
HpyAV	CCTTC	2 cut(s)	77, 532
HpyCH4III	ACNGT	7 cut(s)	422, 443, 590, 911, 935, 1052, 1122
HpyCH4IV	ACGT	2 cut(s)	924, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 539, 958
HpyF3I	CTNAG	7 cut(s)	353, 638, 792, 838, 871, 945, 1059
HpySE526I	ACGT	2 cut(s)	924, 1073
Hsp92II	CATG	5 cut(s)	83, 325, 526, 783, 1041
HspAI	GCGC	1 cut(s)	526
KroI	GCCGGC	1 cut(s)	806
KroNI	GCCGGC	1 cut(s)	808
Kzo9I	GATC	5 cut(s)	88, 308, 769, 889, 1144
LmnI	GCTCC	2 cut(s)	146, 161
Lsp1109I	GCAGC	2 cut(s)	481, 1069
LweI	GCATC	3 cut(s)	142, 634, 890
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	2 cut(s)	924, 1073
MaeIII	GTNAC	2 cut(s)	416, 925
MalI	GATC	5 cut(s)	90, 310, 771, 891, 1146
MboI	GATC	5 cut(s)	88, 308, 769, 889, 1144
MboII	GAAGA	3 cut(s)	376, 380, 778
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	685
MluCI	AATT	8 cut(s)	316, 467, 506, 697, 863, 917, 1006, 1087
MlyI	GAGTC	2 cut(s)	656, 982
MmeI	TCCRAC	1 cut(s)	1108
MnlI	CCTC	8 cut(s)	245, 248, 421, 467, 560, 647, 776, 801
MroNI	GCCGGC	1 cut(s)	806
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	5 cut(s)	108, 813, 834, 920, 1158
MslI	CAYNNNNRTG	2 cut(s)	119, 751
MspA1I	CMGCKG	2 cut(s)	823, 887
MspI	CCGG	3 cut(s)	345, 601, 807
MspR9I	CCNGG	1 cut(s)	602
MwoI	GCNNNNNNNGC	3 cut(s)	161, 539, 958
NaeI	GCCGGC	1 cut(s)	808
NciI	CCSGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	5 cut(s)	88, 308, 769, 889, 1144
NgoMIV	GCCGGC	1 cut(s)	806
NlaIII	CATG	5 cut(s)	83, 325, 526, 783, 1041
NlaIV	GGNNCC	1 cut(s)	1191
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	526
PaeI	GCATGC	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	4 cut(s)	339, 848, 966, 1034
PkrI	GCNGC	3 cut(s)	496, 1084, 1181
Ple19I	CGATCG	1 cut(s)	1147
PleI	GAGTC	2 cut(s)	656, 981
PpsI	GAGTC	2 cut(s)	656, 981
PshAI	GACNNNNGTC	1 cut(s)	214
PshBI	ATTAAT	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	924
PspN4I	GGNNCC	1 cut(s)	1191
PstNI	CAGNNNCTG	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	1147
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	2 cut(s)	74, 757
RsaNI	GTAC	2 cut(s)	73, 756
RseI	CAYNNNNRTG	2 cut(s)	119, 751
SaqAI	TTAA	5 cut(s)	108, 813, 834, 920, 1158
SatI	GCNGC	3 cut(s)	495, 1083, 1180
Sau3AI	GATC	5 cut(s)	88, 308, 769, 889, 1144
SchI	GAGTC	2 cut(s)	656, 982
ScrFI	CCNGG	1 cut(s)	602
SduI	GDGCHC	1 cut(s)	685
SfaNI	GCATC	3 cut(s)	142, 634, 890
SfcI	CTRYAG	1 cut(s)	983
SmiMI	CAYNNNNRTG	2 cut(s)	119, 751
SpeI	ACTAGT	1 cut(s)	758
SphI	GCATGC	1 cut(s)	526
Sse9I	AATT	8 cut(s)	316, 467, 506, 697, 863, 917, 1006, 1087
SsiI	CCGC	3 cut(s)	189, 821, 1180
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	600
TaaI	ACNGT	7 cut(s)	422, 443, 590, 911, 935, 1052, 1122
TaiI	ACGT	2 cut(s)	927, 1076
TaqI	TCGA	2 cut(s)	768, 1143
TasI	AATT	8 cut(s)	316, 467, 506, 697, 863, 917, 1006, 1087
TatI	WGTACW	2 cut(s)	72, 755
TauI	GCSGC	1 cut(s)	1182
TfiI	GAWTC	4 cut(s)	339, 848, 966, 1034
Tru1I	TTAA	5 cut(s)	108, 813, 834, 920, 1158
Tru9I	TTAA	5 cut(s)	108, 813, 834, 920, 1158
TscAI	CASTG	4 cut(s)	448, 593, 646, 1055
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	494, 1082
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	5 cut(s)	96, 191, 310, 768, 1026
TspGWI	ACGGA	2 cut(s)	290, 1114
TspRI	CASTG	4 cut(s)	448, 593, 646, 1055
VneI	GTGCAC	1 cut(s)	681
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	3 cut(s)	316, 697, 1006
XceI	RCATGY	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.