Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Reverse (-)

2489604 .. 2493820

Gene Structure 4217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0031700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGATCTAGAATCTATATTAGAGGCCGCTTCACGAGCCATAGGATCGCTATTAGTCAGAGGCTCGGCAAAAAACACCGCCTTTCATAGTTGGTTTGGTTGGTTTCCACGTGGCTCTGTTTGCTTGCTCCACGAAGAGAGAGATCAAGAAGGATCGAGAGAGCCAGACAGGTATAGAAGGATCGAGAGCAAGCACAGTCGAAAGAGTGCAGGTTTGTTTCTTGAGAAAGCACAGTCGAAACAGAGAGAGAGAGAGAGAGTGGTGATTCCGTTTTGCTGTGAGGAGGAAGAAGATCTGCCGTTTACCTTTTGGGTTGGGGTATTGTTCGGTTTTGCTGTGAGAAGGAGGAGGATCTGCGTTTTGGATAACTCTGTCGGGTACCTTTTGGGGGTATTGTTTGTGCTTCAGTTTATTTCAGTGATTGATTGGAGGAGGTTCAAGGTGAGGCTTACTCTTGAAGAGCCGAAACATAAAACAAGAGACTTTGGAAATCTAATTTTGAAGGCTCGATTATATGCAAAGAAGTGTGTGTATTATTCTTCTGCCGCTGTTCCTCTGTACATTGTTTGGAAGTATCTCACCGTCTTATTGCTATTCAGTGATGGCACCAAAAACTATGATGAGAGGAGCAAAAAGATTGTTAGAACAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

217

Amino Acids

25.38

Weight (kDa)

9.63

Isoelectric Point (pI)

50.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	378, 605
AciI	CCGC	3 cut(s)	27, 78, 546
AclWI	GGATC	5 cut(s)	12, 52, 160, 188, 359
AcuI	CTGAAG	1 cut(s)	389
AcvI	CACGTG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	380, 560
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	439, 458, 502
Alw26I	GTCTC	1 cut(s)	474
AlwI	GGATC	5 cut(s)	12, 52, 160, 188, 359
AoxI	GGCC	1 cut(s)	24
Asp718I	GGTACC	1 cut(s)	378
AsuHPI	GGTGA	3 cut(s)	274, 454, 571
BanI	GGYRCC	2 cut(s)	378, 605
BauI	CACGAG	1 cut(s)	33
BbrPI	CACGTG	1 cut(s)	110
BccI	CCATC	1 cut(s)	596
BceAI	ACGGC	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	200
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	2 cut(s)	27, 546
BlsI	GCNGC	2 cut(s)	28, 547
BmiI	GGNNCC	2 cut(s)	380, 607
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpuEI	CTTGAG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseRI	GAGGAG	4 cut(s)	296, 361, 445, 640
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	2 cut(s)	378, 605
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	7 cut(s)	4, 44, 142, 152, 180, 292, 351
BspACI	CCGC	3 cut(s)	27, 78, 546
BspANI	GGCC	1 cut(s)	26
BspLI	GGNNCC	2 cut(s)	380, 607
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	5 cut(s)	12, 52, 160, 188, 359
BspQI	GCTCTTC	1 cut(s)	453
BspT107I	GGYRCC	2 cut(s)	378, 605
BsrGI	TGTACA	1 cut(s)	558
BssMI	GATC	7 cut(s)	4, 44, 142, 152, 180, 292, 351
BssSI	CACGAG	1 cut(s)	33
Bst2BI	CACGAG	1 cut(s)	33
Bst4CI	ACNGT	4 cut(s)	197, 234, 583, 649
Bst6I	CTCTTC	2 cut(s)	129, 453
BstAUI	TGTACA	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	125, 191
BstKTI	GATC	7 cut(s)	7, 47, 145, 155, 183, 295, 354
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	7 cut(s)	4, 44, 142, 152, 180, 292, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 120
BstX2I	RGATCY	3 cut(s)	4, 292, 351
BstYI	RGATCY	3 cut(s)	4, 292, 351
BsuRI	GGCC	1 cut(s)	26
BtsIMutI	CAGTG	3 cut(s)	423, 604, 654
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	125, 191
Csp6I	GTAC	2 cut(s)	379, 559
CviJI	RGCY	8 cut(s)	26, 38, 63, 114, 163, 448, 463, 506
CviKI_1	RGCY	8 cut(s)	26, 38, 63, 114, 163, 448, 463, 506
CviQI	GTAC	2 cut(s)	379, 559
DpnI	GATC	7 cut(s)	6, 46, 144, 154, 182, 294, 353
DpnII	GATC	7 cut(s)	4, 44, 142, 152, 180, 292, 351
Eam1104I	CTCTTC	2 cut(s)	129, 453
EarI	CTCTTC	2 cut(s)	129, 453
Eco57I	CTGAAG	1 cut(s)	389
Eco72I	CACGTG	1 cut(s)	110
FaiI	YATR	8 cut(s)	17, 41, 87, 174, 471, 514, 516, 618
Fnu4HI	GCNGC	2 cut(s)	27, 546
Fsp4HI	GCNGC	2 cut(s)	27, 546
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	2 cut(s)	27, 546
HaeIII	GGCC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	11, 265
HphI	GGTGA	3 cut(s)	274, 454, 571
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	7 cut(s)	8, 33, 146, 156, 184, 221, 455
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	4 cut(s)	143, 171, 336, 496
HpyCH4III	ACNGT	4 cut(s)	197, 234, 583, 649
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	209, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 120
HpySE526I	ACGT	1 cut(s)	109
KpnI	GGTACC	1 cut(s)	382
Kzo9I	GATC	7 cut(s)	4, 44, 142, 152, 180, 292, 351
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	2 cut(s)	132, 627
LpnPI	CCDG	3 cut(s)	154, 177, 195
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	109
MalI	GATC	7 cut(s)	6, 46, 144, 154, 182, 294, 353
MboI	GATC	7 cut(s)	4, 44, 142, 152, 180, 292, 351
MboII	GAAGA	5 cut(s)	146, 299, 302, 470, 531
MflI	RGATCY	3 cut(s)	4, 292, 351
MluCI	AATT	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	548
MwoI	GCNNNNNNNGC	2 cut(s)	35, 120
NdeII	GATC	7 cut(s)	4, 44, 142, 152, 180, 292, 351
NlaIV	GGNNCC	2 cut(s)	380, 607
NmeAIII	GCCGAG	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	11, 265
PkrI	GCNGC	2 cut(s)	28, 547
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	1 cut(s)	110
PspCI	CACGTG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	380, 607
PsuI	RGATCY	3 cut(s)	4, 292, 351
RsaI	GTAC	2 cut(s)	380, 560
RsaNI	GTAC	2 cut(s)	379, 559
SapI	GCTCTTC	1 cut(s)	453
SatI	GCNGC	2 cut(s)	27, 546
Sau3AI	GATC	7 cut(s)	4, 44, 142, 152, 180, 292, 351
SetI	ASST	7 cut(s)	112, 173, 214, 308, 384, 437, 444
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	3 cut(s)	27, 78, 546
SspMI	CTAG	1 cut(s)	8
TaaI	ACNGT	4 cut(s)	197, 234, 583, 649
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	5 cut(s)	155, 183, 199, 236, 508
TasI	AATT	1 cut(s)	495
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	2 cut(s)	29, 548
TfiI	GAWTC	2 cut(s)	11, 265
TscAI	CASTG	3 cut(s)	423, 604, 654
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	258
TspRI	CASTG	3 cut(s)	423, 604, 654
XbaI	TCTAGA	1 cut(s)	7
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.