Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

19052890 .. 19055233

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16410.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGGTGAAGTTCTTGTGGATTGGCATTGTAACAGCACTTGTGTTCAGAACTTGGGTTGATGGGTTTGTGGAAGAGAAGAATCTTGATGAGACGGTGCCGTCTTTGTTGGAGACCGATGGAAGCTCCAAGGCTTTTAATGACACACTACTCATGGTAGAGCTAACACTCGTCCAAGAAGCTGCTGCTAAAGGAGCAGTCTGCTTGGATGGAACAGCACCTGCTTATCATTTACATCGTGGATATGGATCGGGAGCGAACAGTTGGCTCATTCACCTTCAGGGAGGAGCATGGTGTAACGACACCAAAAGTTGTTCTAACCGCACAACTTCACTTTTCGGATTGGGATCATCAGCGTACATGGAACCATATATGGCATTTTCTGGAATACTAAGCAACCAATCTGAGGAAAATCCCGGTTTCTCCTCAAACTTAATGGTACATTGGACTGCAGAGTTTTTCAACTGGAATAGAGTAGAGCTCCGCTATTGCGACGGTGCTTCATTTTCTGGGGACAGCGAAAGTCAGGTTGGTGGGATGATCTTGCCATTTACATTTTTCCACAAAAGTATGATAGGGGTTGTAGTAGTGCTGCAGCTATTGGAAGCAAAACTGCAATATAGAGGACAGCGTATATGGTTATCTGCAATGGACGATTTGATGTCAAAGGGAATGCGTGACGCGAAAAATGCTCTTCTTTGTGGTTGCTCTGCCGGCGGTCTGTCAACAATTTTGCACTGTGATGAGTTTCGGGGCATGTTTCCCACAAGTACAAAAGTGAAGTGCCTGAGTGATGCTGGATTTTTTCTTGACGCGGTTGATATTTCCGGTGAACGCACACTGAGGGATTATTATAGCGGTGTTGTAAGCTTGCAGGGGGTGCAAGAAAATCTGCTGCGATTCTGTACTAGTCACCTCGATCCTACTTCGTGCTTCTTCCCGGAGAACTTAATTGTGAACATTACAACCCCGCTATTTATACTCAATTCAGCATACGATTCATGGCAGATCAATAACAGTTTCGTTCCACCATCAGCAGATCGGTGCAGCGAGTGGGAGAGTTGCAGATTTAACCTTGCAAGTTGTTCTGCATCACAGATGCAAATTCTGCAAGGATTCAGGAATCAAATGCTGAATGCAGTAAAACAATTCTCAATCCCTAATCAAAATGGGATGTTCATAAATTCGTGTTTAGTGCACTGTCAAACGAAGGAAAGTGCATTGTTTGCTCATGAATTTCCAGCTCTTGGAAACAAGACAATTGGAGAAGCTCTTGGTGATTGGTATTTTGATAGAGCAGAGGTTAAGGTTGTTGATGAAACTTGCTGCGATCTGGCTCTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

448

Amino Acids

49.49

Weight (kDa)

4.96

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
AasI	GACNNNNNNGTC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	226
AccB1I	GGYRCC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	1244
AccII	CGCG	2 cut(s)	680, 812
AciI	CCGC	6 cut(s)	319, 481, 714, 812, 855, 968
AclWI	GGATC	3 cut(s)	253, 352, 911
AcsI	RAATTY	3 cut(s)	1101, 1180, 1232
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	4 cut(s)	356, 438, 769, 904
AfiI	CCNNNNNNNGG	2 cut(s)	403, 1244
AgsI	TTSAA	1 cut(s)	460
AhlI	ACTAGT	1 cut(s)	905
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	8 cut(s)	123, 160, 179, 478, 595, 867, 1241, 1268
AluI	AGCT	8 cut(s)	123, 160, 179, 478, 595, 867, 1241, 1268
Alw21I	GWGCWC	2 cut(s)	480, 1197
Alw26I	GTCTC	2 cut(s)	83, 104
Alw44I	GTGCAC	1 cut(s)	1193
AlwI	GGATC	3 cut(s)	253, 352, 911
AlwNI	CAGNNNCTG	1 cut(s)	218
ApaLI	GTGCAC	1 cut(s)	1193
ApeKI	GCWGC	7 cut(s)	179, 182, 589, 592, 892, 1044, 1323
ApoI	RAATTY	3 cut(s)	1101, 1180, 1232
AsuC2I	CCSGG	2 cut(s)	414, 938
AsuHPI	GGTGA	5 cut(s)	16, 263, 839, 902, 1286
BaeGI	GKGCMC	1 cut(s)	1197
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	2 cut(s)	480, 1197
BbvI	GCAGC	7 cut(s)	166, 169, 576, 604, 879, 1056, 1310
BccI	CCATC	4 cut(s)	53, 110, 200, 1036
BceAI	ACGGC	1 cut(s)	82
BcnI	CCSGG	2 cut(s)	414, 938
BcoDI	GTCTC	2 cut(s)	83, 104
BcuI	ACTAGT	1 cut(s)	905
BfaI	CTAG	1 cut(s)	906
BfmI	CTRYAG	2 cut(s)	447, 590
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	7 cut(s)	180, 183, 590, 593, 893, 1045, 1324
BlsI	GCNGC	7 cut(s)	181, 184, 591, 594, 894, 1046, 1325
Bme1390I	CCNGG	2 cut(s)	414, 938
BmiI	GGNNCC	2 cut(s)	96, 363
BmrFI	CCNGG	2 cut(s)	414, 938
BmsI	GCATC	3 cut(s)	781, 1086, 1097
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
BpuMI	CCSGG	2 cut(s)	414, 938
BsaBI	GATNNNNATC	2 cut(s)	244, 343
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	824
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 1244
Bse118I	RCCGGY	1 cut(s)	710
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	651
Bse8I	GATNNNNATC	2 cut(s)	244, 343
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	3 cut(s)	211, 540, 1176
BseJI	GATNNNNATC	2 cut(s)	244, 343
BseLI	CCNNNNNNNGG	2 cut(s)	403, 1244
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	3 cut(s)	393, 776, 830
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	2 cut(s)	297, 412
BseSI	GKGCMC	1 cut(s)	1197
BseXI	GCAGC	7 cut(s)	166, 169, 576, 604, 879, 1056, 1310
BsgI	GTGCAG	1 cut(s)	1063
Bsh1236I	CGCG	2 cut(s)	680, 812
BshNI	GGYRCC	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	480, 1197
BsiSI	CCGG	4 cut(s)	414, 711, 825, 938
BslFI	GGGAC	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	403, 1244
BsmAI	GTCTC	2 cut(s)	83, 104
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	524
BsmI	GAATGC	2 cut(s)	675, 1138
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	480, 1197
Bsp143I	GATC	7 cut(s)	245, 344, 537, 916, 1005, 1036, 1327
BspACI	CCGC	6 cut(s)	319, 481, 714, 812, 855, 968
BspCNI	CTCAG	3 cut(s)	394, 777, 831
BspFNI	CGCG	2 cut(s)	680, 812
BspHI	TCATGA	1 cut(s)	1228
BspLI	GGNNCC	2 cut(s)	96, 363
BspMAI	CTGCAG	2 cut(s)	451, 594
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	3 cut(s)	253, 352, 911
BspQI	GCTCTTC	1 cut(s)	696
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	651
BsrFI	RCCGGY	1 cut(s)	710
BsrI	ACTGG	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	7 cut(s)	245, 344, 537, 916, 1005, 1036, 1327
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	6 cut(s)	94, 260, 494, 737, 1016, 1199
Bst6I	CTCTTC	2 cut(s)	66, 696
BstAPI	GCANNNNNTGC	3 cut(s)	877, 1105, 1223
BstC8I	GCNNGC	2 cut(s)	712, 869
BstDEI	CTNAG	4 cut(s)	389, 402, 785, 839
BstF5I	GGATG	3 cut(s)	211, 540, 1176
BstFNI	CGCG	2 cut(s)	680, 812
BstKTI	GATC	7 cut(s)	248, 347, 540, 919, 1008, 1039, 1330
BstMAI	GTCTC	2 cut(s)	83, 104
BstMBI	GATC	7 cut(s)	245, 344, 537, 916, 1005, 1036, 1327
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 686, 711, 877, 1105, 1223
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	412, 936
BstSFI	CTRYAG	2 cut(s)	447, 590
BstSLI	GKGCMC	1 cut(s)	1197
BstUI	CGCG	2 cut(s)	680, 812
BstV1I	GCAGC	7 cut(s)	166, 169, 576, 604, 879, 1056, 1310
BtsCI	GGATG	3 cut(s)	211, 540, 1176
BtsIMutI	CAGTG	3 cut(s)	733, 836, 1195
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	712, 869
CaiI	CAGNNNCTG	1 cut(s)	218
CciI	TCATGA	1 cut(s)	1228
Cfr10I	RCCGGY	1 cut(s)	710
CseI	GACGC	2 cut(s)	686, 818
Csp6I	GTAC	4 cut(s)	355, 437, 768, 903
CviAII	CATG	6 cut(s)	151, 288, 358, 754, 999, 1229
CviQI	GTAC	4 cut(s)	355, 437, 768, 903
DdeI	CTNAG	4 cut(s)	389, 402, 785, 839
DpnI	GATC	7 cut(s)	247, 346, 539, 918, 1007, 1038, 1329
DpnII	GATC	7 cut(s)	245, 344, 537, 916, 1005, 1036, 1327
DrdI	GACNNNNNNGTC	1 cut(s)	97
DseDI	GACNNNNNNGTC	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	66, 696
EarI	CTCTTC	2 cut(s)	66, 696
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	480
Eco31I	GGTCTC	1 cut(s)	104
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	6 cut(s)	154, 291, 361, 757, 1002, 1232
FaqI	GGGAC	1 cut(s)	524
FatI	CATG	6 cut(s)	150, 287, 357, 753, 998, 1228
FauI	CCCGC	1 cut(s)	975
Fnu4HI	GCNGC	7 cut(s)	180, 183, 590, 593, 893, 1045, 1324
FokI	GGATG	3 cut(s)	218, 547, 1183
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	7 cut(s)	180, 183, 590, 593, 893, 1045, 1324
FspBI	CTAG	1 cut(s)	906
GluI	GCNGC	7 cut(s)	180, 183, 590, 593, 893, 1045, 1324
HapII	CCGG	4 cut(s)	414, 711, 825, 938
HgaI	GACGC	2 cut(s)	686, 818
Hin1II	CATG	6 cut(s)	154, 291, 361, 757, 1002, 1232
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HindIII	AAGCTT	1 cut(s)	865
HinfI	GANTC	5 cut(s)	79, 897, 995, 1113, 1120
HpaII	CCGG	4 cut(s)	414, 711, 825, 938
HphI	GGTGA	5 cut(s)	16, 263, 839, 902, 1286
Hpy166II	GTNNAC	4 cut(s)	723, 830, 955, 1195
Hpy188I	TCNGA	3 cut(s)	47, 338, 403
Hpy188III	TCNNGA	7 cut(s)	83, 249, 381, 806, 1117, 1229, 1337
Hpy8I	GTNNAC	4 cut(s)	723, 830, 955, 1195
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	2 cut(s)	284, 1201
HpyCH4III	ACNGT	6 cut(s)	94, 260, 494, 737, 1016, 1199
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 686, 711, 877, 1105, 1223
HpyF3I	CTNAG	4 cut(s)	389, 402, 785, 839
Hsp92II	CATG	6 cut(s)	154, 291, 361, 757, 1002, 1232
KroI	GCCGGC	1 cut(s)	710
KroNI	GCCGGC	1 cut(s)	712
Kzo9I	GATC	7 cut(s)	245, 344, 537, 916, 1005, 1036, 1327
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	5 cut(s)	128, 191, 251, 284, 483
Lsp1109I	GCAGC	7 cut(s)	166, 169, 576, 604, 879, 1056, 1310
LweI	GCATC	3 cut(s)	781, 1086, 1097
MaeI	CTAG	1 cut(s)	906
MaeIII	GTNAC	4 cut(s)	28, 293, 674, 908
MalI	GATC	7 cut(s)	247, 346, 539, 918, 1007, 1038, 1329
MboI	GATC	7 cut(s)	245, 344, 537, 916, 1005, 1036, 1327
MboII	GAAGA	4 cut(s)	83, 88, 683, 925
MfeI	CAATTG	1 cut(s)	1257
MhlI	GDGCHC	2 cut(s)	480, 1197
MluCI	AATT	8 cut(s)	726, 948, 982, 1101, 1145, 1180, 1232, 1257
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	7 cut(s)	275, 397, 433, 614, 834, 923, 1291
MroNI	GCCGGC	1 cut(s)	710
MseI	TTAA	5 cut(s)	135, 431, 947, 1068, 1302
MslI	CAYNNNNRTG	1 cut(s)	738
MspI	CCGG	4 cut(s)	414, 711, 825, 938
MspR9I	CCNGG	2 cut(s)	414, 938
MunI	CAATTG	1 cut(s)	1257
Mva1269I	GAATGC	2 cut(s)	675, 1138
MvnI	CGCG	2 cut(s)	680, 812
MwoI	GCNNNNNNNGC	6 cut(s)	191, 686, 711, 877, 1105, 1223
NaeI	GCCGGC	1 cut(s)	712
NciI	CCSGG	2 cut(s)	414, 938
NdeII	GATC	7 cut(s)	245, 344, 537, 916, 1005, 1036, 1327
NgoMIV	GCCGGC	1 cut(s)	710
NlaIII	CATG	6 cut(s)	154, 291, 361, 757, 1002, 1232
NlaIV	GGNNCC	2 cut(s)	96, 363
NmuCI	GTSAC	2 cut(s)	674, 908
NspI	RCATGY	1 cut(s)	757
PagI	TCATGA	1 cut(s)	1228
PaqCI	CACCTGC	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	696
PctI	GAATGC	2 cut(s)	675, 1138
PdiI	GCCGGC	1 cut(s)	712
PfeI	GAWTC	5 cut(s)	79, 897, 995, 1113, 1120
PflMI	CCANNNNNTGG	1 cut(s)	1244
PfoI	TCCNGGA	1 cut(s)	936
PkrI	GCNGC	7 cut(s)	181, 184, 591, 594, 894, 1046, 1325
Psp124BI	GAGCTC	1 cut(s)	480
PspN4I	GGNNCC	2 cut(s)	96, 363
PstI	CTGCAG	2 cut(s)	451, 594
PstNI	CAGNNNCTG	1 cut(s)	218
RsaI	GTAC	4 cut(s)	356, 438, 769, 904
RsaNI	GTAC	4 cut(s)	355, 437, 768, 903
RseI	CAYNNNNRTG	1 cut(s)	738
SacI	GAGCTC	1 cut(s)	480
SapI	GCTCTTC	1 cut(s)	696
SaqAI	TTAA	5 cut(s)	135, 431, 947, 1068, 1302
SatI	GCNGC	7 cut(s)	180, 183, 590, 593, 893, 1045, 1324
Sau3AI	GATC	7 cut(s)	245, 344, 537, 916, 1005, 1036, 1327
ScrFI	CCNGG	2 cut(s)	414, 938
SduI	GDGCHC	2 cut(s)	480, 1197
SfaNI	GCATC	3 cut(s)	781, 1086, 1097
SfcI	CTRYAG	2 cut(s)	447, 590
SmiMI	CAYNNNNRTG	1 cut(s)	738
SpeI	ACTAGT	1 cut(s)	905
Sse9I	AATT	8 cut(s)	726, 948, 982, 1101, 1145, 1180, 1232, 1257
SsiI	CCGC	6 cut(s)	319, 481, 714, 812, 855, 968
SspMI	CTAG	1 cut(s)	906
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	412, 936
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	6 cut(s)	94, 260, 494, 737, 1016, 1199
TaqI	TCGA	2 cut(s)	915, 1338
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	8 cut(s)	726, 948, 982, 1101, 1145, 1180, 1232, 1257
TatI	WGTACW	2 cut(s)	767, 902
TfiI	GAWTC	5 cut(s)	79, 897, 995, 1113, 1120
Tru1I	TTAA	5 cut(s)	135, 431, 947, 1068, 1302
Tru9I	TTAA	5 cut(s)	135, 431, 947, 1068, 1302
TscAI	CASTG	3 cut(s)	740, 843, 1202
TseFI	GTSAC	2 cut(s)	674, 908
TseI	GCWGC	7 cut(s)	179, 182, 589, 592, 892, 1044, 1323
Tsp45I	GTSAC	2 cut(s)	674, 908
TspDTI	ATGAA	5 cut(s)	489, 987, 1165, 1245, 1329
TspRI	CASTG	3 cut(s)	740, 843, 1202
Van91I	CCANNNNNTGG	1 cut(s)	1244
VneI	GTGCAC	1 cut(s)	1193
XapI	RAATTY	3 cut(s)	1101, 1180, 1232
XceI	RCATGY	1 cut(s)	757
XspI	CTAG	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.