Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

19046031 .. 19047978

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16380.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAAAAACAGGTAGCATTTAGTGGAATACTGAGCAATAAAGCCCAAGAAAATCCTGATTTTTTCAACTGGAACAGAGTAAAGGTTCGTTATTGTGATGGTGCTTCTTTTACTGGGGATAGTGAACACAAGGCTAAACAACTGCAATTTAGAGGGGAGCGTATATGGTTGGCTGCAATGGAAGACTTGAAATCAAGGGGCATGCGCTACGCCAAGCAGGCTCTTCTTTCAGGTTGCTCAGCCGGAGGTCTGGCAGCTATTTTGCACTGTGATAAGTTCCGAGGTTTAATGCCAGGAAATACAAAGGTGAAGTGCCTGAGCGATGCTGGATTGTTTCTTGATGCGCATGACGTTTCTGGTGGACACACACTCAGGAATTTATATAGTGGCATCGTTGGCTTGCAGTGCTTCTTCCCTCAGAACTTGATCTCCAGCGTCAAAACCCCACTGTTTATACTCAATGCAGCATATGATTCGTGGCAGATCCAGTCCAGTTTAGCTCCACCAGCAGCAGATCCTGCCGGCTACTGGCGCGATTGCAGATTAAACCATGCAAAATGTACTTCATCACAGATCAATTTTCTTCAAGGATTCAGGAATCAAATGCTGAATGCAGTAAAACGGTTCTCTATGTCTAAACAAAACGGGCTGTTTATAAATTCGTGTTTTGCTCACTGCCAATCCGAGAGGCAGGATACATGGTTTGCTGATGATTCTCCAGTTATTGGAAAGAAGGCAATCGCTATAGCAGTTGGAGATTGGTATTTCGACAGAACAAGCGTGAAGGCCATAGATTGTCCCTACCCATGTGACAATTCTTGCCACAATCTGAATTTCGAAAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

283

Amino Acids

31.45

Weight (kDa)

8.79

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
Acc16I	TGCGCA	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	725
AccII	CGCG	1 cut(s)	534
AclWI	GGATC	2 cut(s)	478, 509
AcsI	RAATTY	3 cut(s)	376, 658, 832
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	2 cut(s)	528, 725
AgsI	TTSAA	3 cut(s)	67, 190, 587
AjnI	CCWGG	1 cut(s)	292
AloI	GAACNNNNNNTCC	2 cut(s)	413, 445
AluBI	AGCT	3 cut(s)	257, 500, 845
AluI	AGCT	3 cut(s)	257, 500, 845
AlwI	GGATC	2 cut(s)	478, 509
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	1 cut(s)	786
ApeKI	GCWGC	4 cut(s)	173, 254, 464, 509
ApoI	RAATTY	3 cut(s)	376, 658, 832
AspLEI	GCGC	3 cut(s)	207, 346, 534
AsuHPI	GGTGA	1 cut(s)	319
AsuII	TTCGAA	1 cut(s)	837
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	4 cut(s)	160, 266, 476, 521
BccI	CCATC	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BciT130I	CCWGG	1 cut(s)	294
BciVI	GTATCC	1 cut(s)	688
BfmI	CTRYAG	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	174, 255, 465, 510
BlpI	GCTNAGC	1 cut(s)	238
BlsI	GCNGC	4 cut(s)	175, 256, 466, 511
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	313, 331, 399
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	2 cut(s)	415, 702
Bpu10I	CCTNAGC	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	238
Bpu14I	TTCGAA	1 cut(s)	837
BsaJI	CCNNGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	2 cut(s)	413, 443
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 725
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	6 cut(s)	74, 118, 487, 492, 533, 719
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	280
BseLI	CCNNNNNNNGG	2 cut(s)	528, 725
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	5 cut(s)	23, 252, 308, 385, 431
BseNI	ACTGG	6 cut(s)	74, 118, 487, 492, 533, 719
BseXI	GCAGC	4 cut(s)	160, 266, 476, 521
Bsh1236I	CGCG	1 cut(s)	534
BshFI	GGCC	1 cut(s)	788
BsiSI	CCGG	2 cut(s)	243, 522
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	2 cut(s)	528, 725
BsmFI	GGGAC	1 cut(s)	783
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	788
Bsp119I	TTCGAA	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	426, 483, 514, 573
Bsp1720I	GCTNAGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	788
BspCNI	CTCAG	5 cut(s)	24, 251, 309, 384, 430
BspFNI	CGCG	1 cut(s)	534
BspPI	GGATC	2 cut(s)	478, 509
BspQI	GCTCTTC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	837
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	6 cut(s)	74, 118, 487, 492, 533, 719
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	4 cut(s)	426, 483, 514, 573
Bst2UI	CCWGG	1 cut(s)	294
Bst4CI	ACNGT	3 cut(s)	269, 450, 624
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	837
BstC8I	GCNNGC	4 cut(s)	203, 219, 401, 523
BstDEI	CTNAG	6 cut(s)	32, 238, 317, 371, 417, 846
BstFNI	CGCG	1 cut(s)	534
BstHHI	GCGC	3 cut(s)	207, 346, 534
BstKTI	GATC	4 cut(s)	429, 486, 517, 576
BstMBI	GATC	4 cut(s)	426, 483, 514, 573
BstMWI	GCNNNNNNNGC	6 cut(s)	218, 396, 405, 506, 518, 531
BstNI	CCWGG	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	744
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	4 cut(s)	160, 266, 476, 521
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	483, 514
BstYI	RGATCY	2 cut(s)	483, 514
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	1 cut(s)	788
BtgZI	GCGATG	1 cut(s)	336
BtsI	GCAGTG	2 cut(s)	410, 673
BtsIMutI	CAGTG	4 cut(s)	265, 410, 446, 673
Cac8I	GCNNGC	4 cut(s)	203, 219, 401, 523
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	3 cut(s)	207, 346, 534
Cfr10I	RCCGGY	1 cut(s)	521
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	5 cut(s)	202, 347, 551, 699, 807
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	6 cut(s)	32, 238, 317, 371, 417, 846
DpnI	GATC	4 cut(s)	428, 485, 516, 575
DpnII	GATC	4 cut(s)	426, 483, 514, 573
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	292
FaeI	CATG	5 cut(s)	205, 350, 554, 702, 810
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	5 cut(s)	201, 346, 550, 698, 806
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	174, 255, 465, 510
Fsp4HI	GCNGC	4 cut(s)	174, 255, 465, 510
FspAI	RTGCGCAY	1 cut(s)	345
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	3 cut(s)	206, 345, 533
GluI	GCNGC	4 cut(s)	174, 255, 465, 510
GsuI	CTGGAG	2 cut(s)	415, 702
HaeIII	GGCC	1 cut(s)	788
HapII	CCGG	2 cut(s)	243, 522
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	3 cut(s)	207, 346, 534
Hin1II	CATG	5 cut(s)	205, 350, 554, 702, 810
Hin6I	GCGC	3 cut(s)	205, 344, 532
HinP1I	GCGC	3 cut(s)	205, 344, 532
HinfI	GANTC	4 cut(s)	473, 591, 598, 713
HpaII	CCGG	2 cut(s)	243, 522
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	125, 362
Hpy188I	TCNGA	4 cut(s)	281, 420, 685, 831
Hpy188III	TCNNGA	4 cut(s)	56, 338, 373, 595
Hpy8I	GTNNAC	2 cut(s)	125, 362
HpyAV	CCTTC	2 cut(s)	727, 778
HpyCH4III	ACNGT	3 cut(s)	269, 450, 624
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	8 cut(s)	145, 176, 265, 403, 464, 540, 554, 614
HpyF10VI	GCNNNNNNNGC	6 cut(s)	218, 396, 405, 506, 518, 531
HpyF3I	CTNAG	6 cut(s)	32, 238, 317, 371, 417, 846
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	5 cut(s)	205, 350, 554, 702, 810
HspAI	GCGC	3 cut(s)	205, 344, 532
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Kzo9I	GATC	4 cut(s)	426, 483, 514, 573
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	157, 505
Lsp1109I	GCAGC	4 cut(s)	160, 266, 476, 521
LweI	GCATC	3 cut(s)	313, 331, 399
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	809
MalI	GATC	4 cut(s)	428, 485, 516, 575
MboI	GATC	4 cut(s)	426, 483, 514, 573
MboII	GAAGA	4 cut(s)	194, 215, 403, 575
MflI	RGATCY	2 cut(s)	483, 514
MluCI	AATT	6 cut(s)	146, 376, 577, 658, 814, 832
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	5 cut(s)	146, 239, 275, 426, 681
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	2 cut(s)	287, 545
MspI	CCGG	2 cut(s)	243, 522
MspR9I	CCNGG	1 cut(s)	294
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	294
MvnI	CGCG	1 cut(s)	534
MwoI	GCNNNNNNNGC	6 cut(s)	218, 396, 405, 506, 518, 531
NaeI	GCCGGC	1 cut(s)	523
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	4 cut(s)	426, 483, 514, 573
NgoMIV	GCCGGC	1 cut(s)	521
NlaIII	CATG	5 cut(s)	205, 350, 554, 702, 810
NmuCI	GTSAC	1 cut(s)	809
NsbI	TGCGCA	1 cut(s)	345
NspI	RCATGY	1 cut(s)	205
NspV	TTCGAA	1 cut(s)	837
PaeI	GCATGC	1 cut(s)	205
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	1 cut(s)	616
PdiI	GCCGGC	1 cut(s)	523
PfeI	GAWTC	4 cut(s)	473, 591, 598, 713
PflMI	CCANNNNNTGG	1 cut(s)	725
PkrI	GCNGC	4 cut(s)	175, 256, 466, 511
PsiI	TTATAA	1 cut(s)	656
Psp6I	CCWGG	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	518
PsuI	RGATCY	2 cut(s)	483, 514
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	287, 545
SatI	GCNGC	4 cut(s)	174, 255, 465, 510
Sau3AI	GATC	4 cut(s)	426, 483, 514, 573
ScrFI	CCNGG	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	313, 331, 399
SfcI	CTRYAG	1 cut(s)	744
SfuI	TTCGAA	1 cut(s)	837
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	6 cut(s)	146, 376, 577, 658, 814, 832
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	3 cut(s)	269, 450, 624
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	768, 837
TasI	AATT	6 cut(s)	146, 376, 577, 658, 814, 832
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	4 cut(s)	473, 591, 598, 713
Tru1I	TTAA	2 cut(s)	287, 545
Tru9I	TTAA	2 cut(s)	287, 545
TscAI	CASTG	4 cut(s)	272, 410, 453, 680
TseFI	GTSAC	1 cut(s)	809
TseI	GCWGC	4 cut(s)	173, 254, 464, 509
Tsp45I	GTSAC	1 cut(s)	809
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	4 cut(s)	272, 410, 453, 680
Van91I	CCANNNNNTGG	1 cut(s)	725
XapI	RAATTY	3 cut(s)	376, 658, 832
XceI	RCATGY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.