pycom12g18460

Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
20604995 .. 20608720
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g18460.12

Sequence Viewer

Length: 1503 bp
ATGGTAGAGATAACACTCGTCGAAGGAGCTGCTGCCAAAGGAGCAGTCTGCCTGGATGGAACAGTACCTGCTTATCATTTGCATCATGGATATGGATCGGGGGTGAACAGTTGGCTTATTCACCTTCAGGGAGGAGCATGGTGTAATGACACCAAAAGTTGTTCTAACCGCAAATTTTCAGCATATGGATCATCAGCACACATGGAAAAGGAGAGAGCATTTTCTGGAATACTAAGCAATAAATCTGAAGAAAATCCCGGGACTGCAGAGTTTTTCAACTGGAATAGAGTAGAACTTCGCTATTGTGATGGCGCTTCATTTTCTGGGGACAGTGAAAATCAGGTTGGTGGAATGTTCTTGCCATTTACCTTTTTTCCACAAAATTATGATACACAACTGCAATTTAGAGGACAGCGTATATGGTTATCTGCAATGGATGATTTGATGTCAAAGGGAATGCGCAACGCAAATCAGGCTCTTCTTTCTGGTTGCTCTGCCGGCGGTCTGTCATCCATTTTGCACTGTGATGAGTTTCGGAGCTTGTTTCCCACAACTACAAAAGTGAAGTGCCTGAGTGATGCTGGATTTTTTCTCGACGCGGTTGATATATCTGGTGGACGCACACTCAGGGATTATTATAGTGGTGTTGTAAGCTTGCAGGGGGTGCAAGAAAATCTGCCGCGATTCTGTATTAGTCACCTCAACCCTACTTCGTGCTTCTTTCCTGAGAACTTAATCGCGAACATTACAACCCCGCTTTTTATACTCAATGCAGCATATGACTCATGGCAGATCGATAACAGTTTAGCTCCACCATCAGCAGATCCCGGCGGTGAGTGGAACAGTTGCAGATTAAACCTTGCAAGTTGTTCGGCATCACAGATGCAAATTCTGCAAGGTGAAATCCCACAAACAAGGAATTTTTTTCGACTCTTAAATCTTGCAGAAGCTGCAGAATTTCAGAAACAAACTGTGAATCAAATGCTGAATGCAGTAAAACAATTCTCGGTGTCTAATCAAACTGGGATGTTCATAAATTCGTGTTTCGCACACTGTCAAACGGGGCAAAGTGCATGGTCTGCTCATGATTCTCCAGCTGTTGGAAACAAGACAATTGCAGAAGCTGTCGGAGATTGGTATTTTGATAGAGCAGAGGTTAAGGTTGTTGATGAAACCTGCCGCCATCTGGCTATCGAGAGAGCCATGGTGAAGTTCTTGTGTGTAGGCATTGTGACAGTACTCGTTTTCATAATTTGGGCCAATGGGTGTGCGGAGAAAAGTCTCAATGAGGCGGTACCACCTTTGTTGAAGACCTATGGAGGAACCTCCAAGGCTGCAAATGGCATACTGATGGTAGGGCTAACCCTCATCGAAGGAGCTGCTTGGATGGAACAGTACCTGCTTATCATTTGCATCGTGGATATGGATCGGGGGCGAATAGTTGGCTCATTCACCTTCAGGTTTGTGAGAAGAAACTTACACTTCAGAGCATGTTGTGACTGA

Protein Analysis

501

Amino Acids

55.0

Weight (kDa)

5.91

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 461
Acc36I ACCTGC 3 cut(s) 76, 1184, 1407
Acc65I GGTACC 1 cut(s) 1294
AccB1I GGYRCC 1 cut(s) 1294
AccB7I CCANNNNNTGG 1 cut(s) 1100
AccII CGCG 3 cut(s) 599, 682, 740
AciI CCGC 9 cut(s) 169, 501, 599, 680, 755, 831, 1180, 1271, 1292
AclWI GGATC 4 cut(s) 103, 196, 818, 1434
AcsI RAATTY 5 cut(s) 173, 888, 919, 956, 1036
AcuI CTGAAG 4 cut(s) 110, 267, 1441, 1468
AfaI GTAC 4 cut(s) 66, 1239, 1296, 1397
AfiI CCNNNNNNNGG 2 cut(s) 1100, 1186
AgsI TTSAA 2 cut(s) 277, 1309
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 8 cut(s) 29, 540, 654, 809, 950, 1097, 1124, 1379
AluI AGCT 8 cut(s) 29, 540, 654, 809, 950, 1097, 1124, 1379
Alw26I GTCTC 1 cut(s) 1286
AlwI GGATC 4 cut(s) 103, 196, 818, 1434
AlwNI CAGNNNCTG 4 cut(s) 68, 950, 1124, 1399
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 1 cut(s) 1257
ApeKI GCWGC 6 cut(s) 29, 32, 773, 950, 1334, 1379
ApoI RAATTY 5 cut(s) 173, 888, 919, 956, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 30, 62
Asp718I GGTACC 1 cut(s) 1294
AspLEI GCGC 2 cut(s) 314, 462
AspS9I GGNCC 1 cut(s) 1257
AsuC2I CCSGG 3 cut(s) 258, 259, 828
AsuHPI GGTGA 7 cut(s) 113, 115, 689, 845, 911, 1219, 1444
AvaI CYCGRG 1 cut(s) 257
BanI GGYRCC 1 cut(s) 1294
BbsI GAAGAC 1 cut(s) 1316
BbvI GCAGC 6 cut(s) 16, 19, 785, 937, 1321, 1366
BccI CCATC 6 cut(s) 50, 302, 823, 1191, 1345, 1381
BcgI CGANNNNNNTGC 6 cut(s) 11, 45, 852, 886, 1361, 1395
BciT130I CCWGG 1 cut(s) 53
BcnI CCSGG 3 cut(s) 258, 259, 828
BcoDI GTCTC 1 cut(s) 1286
BfmI CTRYAG 2 cut(s) 264, 951
BfoI RGCGCY 1 cut(s) 315
BfuAI ACCTGC 3 cut(s) 76, 1184, 1407
BisI GCNGC 8 cut(s) 30, 33, 680, 774, 951, 1180, 1335, 1380
BlsI GCNGC 8 cut(s) 31, 34, 681, 775, 952, 1181, 1336, 1381
BmcAI AGTACT 1 cut(s) 1239
Bme1390I CCNGG 4 cut(s) 53, 258, 259, 828
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 1257
BmiI GGNNCC 2 cut(s) 1296, 1324
BmrFI CCNGG 4 cut(s) 53, 258, 259, 828
BmrI ACTGGG 1 cut(s) 1032
BmsI GCATC 5 cut(s) 91, 568, 873, 884, 1422
BmuI ACTGGG 1 cut(s) 1032
BpiI GAAGAC 1 cut(s) 1316
BpmI CTGGAG 1 cut(s) 1077
BpuMI CCSGG 3 cut(s) 258, 259, 828
Bsa29I ATCGAT 1 cut(s) 795
BsaBI GATNNNNATC 2 cut(s) 94, 1425
BsaJI CCNNGG 3 cut(s) 257, 1203, 1329
Bsc4I CCNNNNNNNGG 2 cut(s) 1100, 1186
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 2 cut(s) 284, 1027
Bse3DI GCAATG 1 cut(s) 438
Bse8I GATNNNNATC 2 cut(s) 94, 1425
BseBI CCWGG 1 cut(s) 53
BseCI ATCGAT 1 cut(s) 795
BseDI CCNNGG 3 cut(s) 257, 1203, 1329
BseGI GGATG 5 cut(s) 61, 442, 509, 1032, 1392
BseJI GATNNNNATC 2 cut(s) 94, 1425
BseLI CCNNNNNNNGG 2 cut(s) 1100, 1186
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 3 cut(s) 563, 640, 717
BseNI ACTGG 2 cut(s) 284, 1027
BseRI GAGGAG 1 cut(s) 147
BseXI GCAGC 6 cut(s) 16, 19, 785, 937, 1321, 1366
Bsh1236I CGCG 3 cut(s) 599, 682, 740
BshFI GGCC 1 cut(s) 1259
BshNI GGYRCC 1 cut(s) 1294
BshVI ATCGAT 1 cut(s) 795
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 3 cut(s) 258, 498, 828
BslFI GGGAC 2 cut(s) 274, 341
BslI CCNNNNNNNGG 2 cut(s) 1100, 1186
BsmAI GTCTC 1 cut(s) 1286
BsmFI GGGAC 2 cut(s) 274, 341
BsmI GAATGC 2 cut(s) 462, 994
BsnI GGCC 1 cut(s) 1259
BsoBI CYCGRG 1 cut(s) 257
Bsp143I GATC 5 cut(s) 95, 188, 792, 823, 1426
Bsp19I CCATGG 1 cut(s) 1203
Bsp68I TCGCGA 1 cut(s) 740
BspACI CCGC 9 cut(s) 169, 501, 599, 680, 755, 831, 1180, 1271, 1292
BspANI GGCC 1 cut(s) 1259
BspCNI CTCAG 3 cut(s) 564, 639, 718
BspDI ATCGAT 1 cut(s) 795
BspFNI CGCG 3 cut(s) 599, 682, 740
BspHI TCATGA 1 cut(s) 1084
BspLI GGNNCC 2 cut(s) 1296, 1324
BspMAI CTGCAG 2 cut(s) 268, 955
BspMI ACCTGC 3 cut(s) 76, 1184, 1407
BspPI GGATC 4 cut(s) 103, 196, 818, 1434
BspQI GCTCTTC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 1294
BsrDI GCAATG 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 497
BsrI ACTGG 2 cut(s) 284, 1027
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 3 cut(s) 257, 1203, 1329
BssMI GATC 5 cut(s) 95, 188, 792, 823, 1426
BssT1I CCWWGG 2 cut(s) 1203, 1329
Bst2UI CCWGG 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 483
BstAPI GCANNNNNTGC 4 cut(s) 664, 892, 950, 1079
BstC8I GCNNGC 2 cut(s) 499, 656
BstDEI CTNAG 4 cut(s) 233, 572, 626, 726
BstDSI CCRYGG 1 cut(s) 1203
BstF5I GGATG 5 cut(s) 61, 442, 509, 1032, 1392
BstFNI CGCG 3 cut(s) 599, 682, 740
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 2 cut(s) 314, 462
BstKTI GATC 5 cut(s) 98, 191, 795, 826, 1429
BstMAI GTCTC 1 cut(s) 1286
BstMBI GATC 5 cut(s) 95, 188, 792, 823, 1426
BstMWI GCNNNNNNNGC 7 cut(s) 41, 473, 498, 664, 892, 950, 1079
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 1494
BstSCI CCNGG 4 cut(s) 51, 256, 257, 826
BstSFI CTRYAG 2 cut(s) 264, 951
BstUI CGCG 3 cut(s) 599, 682, 740
BstV1I GCAGC 6 cut(s) 16, 19, 785, 937, 1321, 1366
BstV2I GAAGAC 1 cut(s) 1316
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 795
BsuRI GGCC 1 cut(s) 1259
BsuTUI ATCGAT 1 cut(s) 795
BtgI CCRYGG 1 cut(s) 1203
BtsCI GGATG 5 cut(s) 61, 442, 509, 1032, 1392
BtsIMutI CAGTG 3 cut(s) 337, 520, 1051
BtuMI TCGCGA 1 cut(s) 740
BveI ACCTGC 3 cut(s) 76, 1184, 1407
Cac8I GCNNGC 2 cut(s) 499, 656
CaiI CAGNNNCTG 4 cut(s) 68, 950, 1124, 1399
CciI TCATGA 1 cut(s) 1084
CfoI GCGC 2 cut(s) 314, 462
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 1257
Cfr9I CCCGGG 1 cut(s) 257
ClaI ATCGAT 1 cut(s) 795
CseI GACGC 2 cut(s) 605, 627
Csp6I GTAC 4 cut(s) 65, 1238, 1295, 1396
CspCI CAANNNNNGTGG 2 cut(s) 1287, 1322
CviAII CATG 8 cut(s) 86, 138, 202, 786, 1074, 1085, 1204, 1491
CviQI GTAC 4 cut(s) 65, 1238, 1295, 1396
DdeI CTNAG 4 cut(s) 233, 572, 626, 726
DpnI GATC 5 cut(s) 97, 190, 794, 825, 1428
DpnII GATC 5 cut(s) 95, 188, 792, 823, 1426
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 2 cut(s) 1203, 1329
Eco57I CTGAAG 4 cut(s) 110, 267, 1441, 1468
Eco88I CYCGRG 1 cut(s) 257
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 1203, 1329
ErhI CCWWGG 2 cut(s) 1203, 1329
FaeI CATG 8 cut(s) 89, 141, 205, 789, 1077, 1088, 1207, 1494
FaqI GGGAC 2 cut(s) 274, 341
FatI CATG 8 cut(s) 85, 137, 201, 785, 1073, 1084, 1203, 1490
FauI CCCGC 1 cut(s) 762
FauNDI CATATG 2 cut(s) 184, 778
Fnu4HI GCNGC 8 cut(s) 30, 33, 680, 774, 951, 1180, 1335, 1380
FokI GGATG 5 cut(s) 68, 449, 496, 1039, 1399
Fsp4HI GCNGC 8 cut(s) 30, 33, 680, 774, 951, 1180, 1335, 1380
FspI TGCGCA 1 cut(s) 461
GlaI GCGC 2 cut(s) 313, 461
GluI GCNGC 8 cut(s) 30, 33, 680, 774, 951, 1180, 1335, 1380
GsuI CTGGAG 1 cut(s) 1077
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 1 cut(s) 1259
HapII CCGG 3 cut(s) 258, 498, 828
HgaI GACGC 2 cut(s) 605, 627
HhaI GCGC 2 cut(s) 314, 462
Hin1II CATG 8 cut(s) 89, 141, 205, 789, 1077, 1088, 1207, 1494
Hin6I GCGC 2 cut(s) 312, 460
HinP1I GCGC 2 cut(s) 312, 460
HindIII AAGCTT 1 cut(s) 652
HinfI GANTC 5 cut(s) 684, 782, 930, 976, 1088
HpaII CCGG 3 cut(s) 258, 498, 828
HphI GGTGA 7 cut(s) 113, 115, 689, 845, 911, 1219, 1444
Hpy166II GTNNAC 2 cut(s) 106, 617
Hpy188I TCNGA 5 cut(s) 247, 537, 963, 1130, 1487
Hpy188III TCNNGA 6 cut(s) 225, 593, 725, 739, 1085, 1195
Hpy8I GTNNAC 2 cut(s) 106, 617
Hpy99I CGWCG 2 cut(s) 23, 599
HpyAV CCTTC 4 cut(s) 17, 134, 1367, 1465
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 473, 498, 664, 892, 950, 1079
HpyF3I CTNAG 4 cut(s) 233, 572, 626, 726
Hsp92II CATG 8 cut(s) 89, 141, 205, 789, 1077, 1088, 1207, 1494
HspAI GCGC 2 cut(s) 312, 460
KpnI GGTACC 1 cut(s) 1298
KroI GCCGGC 1 cut(s) 497
KroNI GCCGGC 1 cut(s) 499
Kzo9I GATC 5 cut(s) 95, 188, 792, 823, 1426
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 6 cut(s) 26, 41, 134, 537, 814, 1376
Lsp1109I GCAGC 6 cut(s) 16, 19, 785, 937, 1321, 1366
LweI GCATC 5 cut(s) 91, 568, 873, 884, 1422
MaeIII GTNAC 3 cut(s) 695, 1231, 1496
MalI GATC 5 cut(s) 97, 190, 794, 825, 1428
MboI GATC 5 cut(s) 95, 188, 792, 823, 1426
MboII GAAGA 4 cut(s) 260, 470, 1321, 1482
MfeI CAATTG 1 cut(s) 1113
MflI RGATCY 1 cut(s) 823
MlyI GAGTC 2 cut(s) 776, 924
MmeI TCCRAC 2 cut(s) 1081, 1108
MnlI CCTC 8 cut(s) 125, 401, 710, 1147, 1282, 1313, 1336, 1376
MroNI GCCGGC 1 cut(s) 497
MseI TTAA 4 cut(s) 734, 854, 935, 1158
MslI CAYNNNNRTG 3 cut(s) 90, 525, 1349
MspA1I CMGCKG 1 cut(s) 1097
MspI CCGG 3 cut(s) 258, 498, 828
MspR9I CCNGG 4 cut(s) 53, 258, 259, 828
MunI CAATTG 1 cut(s) 1113
Mva1269I GAATGC 2 cut(s) 462, 994
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 3 cut(s) 599, 682, 740
MwoI GCNNNNNNNGC 7 cut(s) 41, 473, 498, 664, 892, 950, 1079
NaeI GCCGGC 1 cut(s) 499
NciI CCSGG 3 cut(s) 258, 259, 828
NcoI CCATGG 1 cut(s) 1203
NdeI CATATG 2 cut(s) 184, 778
NdeII GATC 5 cut(s) 95, 188, 792, 823, 1426
NgoMIV GCCGGC 1 cut(s) 497
NlaIII CATG 8 cut(s) 89, 141, 205, 789, 1077, 1088, 1207, 1494
NlaIV GGNNCC 2 cut(s) 1296, 1324
NmuCI GTSAC 3 cut(s) 695, 1231, 1496
NruI TCGCGA 1 cut(s) 740
NsbI TGCGCA 1 cut(s) 461
NspI RCATGY 1 cut(s) 1494
PagI TCATGA 1 cut(s) 1084
PciSI GCTCTTC 1 cut(s) 483
PctI GAATGC 2 cut(s) 462, 994
PdiI GCCGGC 1 cut(s) 499
PfeI GAWTC 3 cut(s) 684, 976, 1088
PflMI CCANNNNNTGG 1 cut(s) 1100
PkrI GCNGC 8 cut(s) 31, 34, 681, 775, 952, 1181, 1336, 1381
PleI GAGTC 2 cut(s) 776, 924
PpsI GAGTC 2 cut(s) 776, 924
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 1296, 1324
PspPI GGNCC 1 cut(s) 1257
PstI CTGCAG 2 cut(s) 268, 955
PstNI CAGNNNCTG 4 cut(s) 68, 950, 1124, 1399
PsuI RGATCY 1 cut(s) 823
PvuII CAGCTG 1 cut(s) 1097
RruI TCGCGA 1 cut(s) 740
RsaI GTAC 4 cut(s) 66, 1239, 1296, 1397
RsaNI GTAC 4 cut(s) 65, 1238, 1295, 1396
RseI CAYNNNNRTG 3 cut(s) 90, 525, 1349
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 4 cut(s) 734, 854, 935, 1158
SatI GCNGC 8 cut(s) 30, 33, 680, 774, 951, 1180, 1335, 1380
Sau3AI GATC 5 cut(s) 95, 188, 792, 823, 1426
Sau96I GGNCC 1 cut(s) 1257
ScaI AGTACT 1 cut(s) 1239
SchI GAGTC 2 cut(s) 776, 924
ScrFI CCNGG 4 cut(s) 53, 258, 259, 828
SfaNI GCATC 5 cut(s) 91, 568, 873, 884, 1422
SfcI CTRYAG 2 cut(s) 264, 951
SmaI CCCGGG 1 cut(s) 259
SmiMI CAYNNNNRTG 3 cut(s) 90, 525, 1349
SsiI CCGC 9 cut(s) 169, 501, 599, 680, 755, 831, 1180, 1271, 1292
StyD4I CCNGG 4 cut(s) 51, 256, 257, 826
StyI CCWWGG 2 cut(s) 1203, 1329
TaqI TCGA 6 cut(s) 21, 594, 795, 928, 1194, 1371
TatI WGTACW 1 cut(s) 1237
TauI GCSGC 2 cut(s) 682, 1182
TfiI GAWTC 3 cut(s) 684, 976, 1088
Tru1I TTAA 4 cut(s) 734, 854, 935, 1158
Tru9I TTAA 4 cut(s) 734, 854, 935, 1158
TscAI CASTG 3 cut(s) 337, 527, 1058
TseFI GTSAC 3 cut(s) 695, 1231, 1496
TseI GCWGC 6 cut(s) 29, 32, 773, 950, 1334, 1379
Tsp45I GTSAC 3 cut(s) 695, 1231, 1496
TspDTI ATGAA 4 cut(s) 306, 1021, 1185, 1237
TspMI CCCGGG 1 cut(s) 257
TspRI CASTG 3 cut(s) 337, 527, 1058
Van91I CCANNNNNTGG 1 cut(s) 1100
XapI RAATTY 5 cut(s) 173, 888, 919, 956, 1036
XceI RCATGY 1 cut(s) 1494
XmaI CCCGGG 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.