Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

27471585 .. 27474851

Gene Structure 3267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G303200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGTTTTTCAAGATTTGGGTGGCAGAGAGATTGAAGCAGAGGAGAGCCGTGATGAAGTTCTTGTGGGTGCTTGGTCTTGTAACAGCACTTGTTTTCAGCAAATGGGTTGACGGGTTTCTGAAGAAGAGTCTTAATAAGACAGAGCTGTCTTTGTTGGAGACCTATGGAGGCTCCAATGCTGCAAATAACACATTAATGGTAGAGTTAACCCTCATTGAAGGAGCTGGTGCTAAAGGAGCAGTCTGCTTGGATGGAACATTACCTGCTTATCATTTGCATCCTGGACATGGGTCAGGTGCAAATAGTTGGCTCATTCACTTGGAGGGAGGAGCATGGTGTAACGACATCCGGAGTTGTTCTAACCGCAAAAATTCAGCATATGGATCTTCATCACTCATGGAAAAAGAGAGGGCATTTACTGGAATACTAAGCAATGAAGCTGAAGATAATCCTGAGTTTTTCAACTGGAATAGAGTAATGCTTCGCTATTGCGATGGTGCTTCTTTTTCTGGGGACAGTGAAAACAAGGAAGCCAACCTGCAATTTAGAGGACAGCGTATATGGTTGTCTGCGATGGAAGATTTGATGTTGAAGGGCATGCGCTATGCCAATCAGGCTCTTCTTACTGGTGGCTCTGCTGGCGGTCTGGCATCCATTTTGCACTGTGACGAGTTTCGGGGCTTATTTCCCACAACTACAAAAGTGAAGTGCATGAGTGATGCTGGATTTTTTCTTGATGCGGTTGATATTTCTGGTGGACGCACACTCAGGAATTTATATACTGGTGTTGTAGGCTTGCAGGGGGTGCAAGAAAATCTGCCACATTACTGCACTAGCCACCTCGATCCTACTTCGTGCTTCTTCCCTGAGAACTTAATCGCCAACATCACAACCCCGTTATTTATACTCAACGCAGCATATGATTCATGGCAGATACAAAACAGTTTAGCTCCTTTATCAGCAGATCCCCACGGCGACTGGAACGGTTGCAGATTAAACCTTGCAAGTTGTTCTCCATCCCAAATGCAATTTCTGCAAGGATTTAGGAACCAAATGTTGGATGCATTAAAACAATTCTCAATGTCTGATCAAAATGGGATGTTCATAAATTCATGTTATGTGCACGGTCAAACGGGGCAAGGTGCATGGTTTGCTCCTGATTCTCCTGCTGTTGGAAACAAGACAATTGCAGAAGCAGTTGGAGATTGGTATTTTGACCGAGCAGAAGTTAAGGTTGTTGATGAAACTTGCCGCCGTCTGGTTCCTCCAGTGACAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

427

Amino Acids

46.93

Weight (kDa)

6.01

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	145
Acc36I	ACCTGC	2 cut(s)	271, 546
AccB7I	CCANNNNNTGG	1 cut(s)	1057
AccIII	TCCGGA	1 cut(s)	348
AciI	CCGC	4 cut(s)	364, 642, 740, 1252
AclWI	GGATC	3 cut(s)	391, 839, 959
AcsI	RAATTY	3 cut(s)	370, 772, 1108
AcuI	CTGAAG	2 cut(s)	140, 462
AfiI	CCNNNNNNNGG	4 cut(s)	287, 1057, 1172, 1258
AgsI	TTSAA	5 cut(s)	10, 34, 218, 463, 592
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	4 cut(s)	1014, 1040, 1046, 1072
AluBI	AGCT	4 cut(s)	145, 224, 440, 950
AluI	AGCT	4 cut(s)	145, 224, 440, 950
Alw21I	GWGCWC	1 cut(s)	1125
Alw26I	GTCTC	1 cut(s)	152
Alw44I	GTGCAC	1 cut(s)	1121
AlwI	GGATC	3 cut(s)	391, 839, 959
Aor13HI	TCCGGA	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	1121
ApeKI	GCWGC	2 cut(s)	179, 914
ApoI	RAATTY	3 cut(s)	370, 772, 1108
AseI	ATTAAT	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	1125
Bbv12I	GWGCWC	1 cut(s)	1125
BbvI	GCAGC	2 cut(s)	166, 926
BccI	CCATC	4 cut(s)	245, 488, 568, 1024
BceAI	ACGGC	3 cut(s)	32, 988, 1239
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	1087
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	834
BfuAI	ACCTGC	2 cut(s)	271, 546
BglI	GCCNNNNNGGC	1 cut(s)	614
BisI	GCNGC	3 cut(s)	180, 915, 1252
BlsI	GCNGC	3 cut(s)	181, 916, 1253
Bme1390I	CCNGG	1 cut(s)	282
BmiI	GGNNCC	3 cut(s)	172, 1049, 1263
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	5 cut(s)	286, 659, 709, 727, 1051
BoxI	GACNNNNGTC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	1251
BsaBI	GATNNNNATC	1 cut(s)	388
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	970
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	4 cut(s)	287, 1057, 1172, 1258
Bse1I	ACTGG	6 cut(s)	424, 470, 631, 787, 983, 1268
Bse3DI	GCAATG	1 cut(s)	439
Bse8I	GATNNNNATC	1 cut(s)	388
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	970
BseGI	GGATG	7 cut(s)	256, 277, 345, 650, 1016, 1066, 1104
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	4 cut(s)	287, 1057, 1172, 1258
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	3 cut(s)	444, 781, 858
BseNI	ACTGG	6 cut(s)	424, 470, 631, 787, 983, 1268
BseRI	GAGGAG	2 cut(s)	55, 342
BseSI	GKGCMC	1 cut(s)	1125
BseXI	GCAGC	2 cut(s)	166, 926
BsgI	GTGCAG	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	1125
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	4 cut(s)	287, 1057, 1172, 1258
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	527
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	1125
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	383, 844, 964, 1087
BspACI	CCGC	4 cut(s)	364, 642, 740, 1252
BspCNI	CTCAG	3 cut(s)	445, 780, 859
BspEI	TCCGGA	1 cut(s)	348
BspLI	GGNNCC	3 cut(s)	172, 1049, 1263
BspMI	ACCTGC	2 cut(s)	271, 546
BspPI	GGATC	3 cut(s)	391, 839, 959
BspQI	GCTCTTC	1 cut(s)	624
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	6 cut(s)	424, 470, 631, 787, 983, 1268
BssECI	CCNNGG	1 cut(s)	970
BssMI	GATC	4 cut(s)	383, 844, 964, 1087
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	5 cut(s)	518, 665, 944, 986, 1127
Bst6I	CTCTTC	2 cut(s)	119, 624
BstAPI	GCANNNNNTGC	3 cut(s)	805, 1033, 1151
BstC8I	GCNNGC	3 cut(s)	599, 640, 797
BstDEI	CTNAG	4 cut(s)	428, 453, 767, 867
BstDSI	CCRYGG	1 cut(s)	970
BstF5I	GGATG	7 cut(s)	256, 277, 345, 650, 1016, 1066, 1104
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	4 cut(s)	386, 847, 967, 1090
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	4 cut(s)	383, 844, 964, 1087
BstMWI	GCNNNNNNNGC	6 cut(s)	236, 614, 639, 805, 1033, 1151
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	601
BstPAI	GACNNNNGTC	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	1125
BstV1I	GCAGC	2 cut(s)	166, 926
BstX2I	RGATCY	2 cut(s)	383, 964
BstYI	RGATCY	2 cut(s)	383, 964
BtgI	CCRYGG	1 cut(s)	970
BtgZI	GCGATG	2 cut(s)	507, 587
BtsCI	GGATG	7 cut(s)	256, 277, 345, 650, 1016, 1066, 1104
BtsIMutI	CAGTG	3 cut(s)	523, 661, 1275
BveI	ACCTGC	2 cut(s)	271, 546
Cac8I	GCNNGC	3 cut(s)	599, 640, 797
CfoI	GCGC	1 cut(s)	603
CseI	GACGC	1 cut(s)	768
CviAII	CATG	8 cut(s)	287, 333, 397, 598, 712, 927, 1113, 1146
DdeI	CTNAG	4 cut(s)	428, 453, 767, 867
DpnI	GATC	4 cut(s)	385, 846, 966, 1089
DpnII	GATC	4 cut(s)	383, 844, 964, 1087
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	119, 624
EarI	CTCTTC	2 cut(s)	119, 624
Eco31I	GGTCTC	1 cut(s)	152
Eco57I	CTGAAG	2 cut(s)	140, 462
EcoRII	CCWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	1066
FaeI	CATG	8 cut(s)	290, 336, 400, 601, 715, 930, 1116, 1149
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	8 cut(s)	286, 332, 396, 597, 711, 926, 1112, 1145
FauNDI	CATATG	2 cut(s)	379, 919
FbaI	TGATCA	1 cut(s)	1087
Fnu4HI	GCNGC	3 cut(s)	180, 915, 1252
FokI	GGATG	7 cut(s)	263, 264, 332, 637, 1003, 1073, 1111
Fsp4HI	GCNGC	3 cut(s)	180, 915, 1252
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	3 cut(s)	180, 915, 1252
GsuI	CTGGAG	1 cut(s)	1251
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	768
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	8 cut(s)	290, 336, 400, 601, 715, 930, 1116, 1149
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HincII	GTYRAC	2 cut(s)	109, 207
HindII	GTYRAC	2 cut(s)	109, 207
HinfI	GANTC	3 cut(s)	127, 923, 1160
HpaI	GTTAAC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	349
Hpy166II	GTNNAC	4 cut(s)	109, 207, 758, 1123
Hpy188I	TCNGA	2 cut(s)	120, 1087
Hpy188III	TCNNGA	6 cut(s)	10, 349, 452, 734, 769, 1157
Hpy8I	GTNNAC	4 cut(s)	109, 207, 758, 1123
HpyAV	CCTTC	2 cut(s)	212, 586
HpyCH4III	ACNGT	5 cut(s)	518, 665, 944, 986, 1127
HpyF10VI	GCNNNNNNNGC	6 cut(s)	236, 614, 639, 805, 1033, 1151
HpyF3I	CTNAG	4 cut(s)	428, 453, 767, 867
Hsp92II	CATG	8 cut(s)	290, 336, 400, 601, 715, 930, 1116, 1149
HspAI	GCGC	1 cut(s)	601
Kpn2I	TCCGGA	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	1087
KspAI	GTTAAC	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	383, 844, 964, 1087
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	6 cut(s)	176, 221, 236, 329, 955, 1159
Lsp1109I	GCAGC	2 cut(s)	166, 926
LweI	GCATC	5 cut(s)	286, 659, 709, 727, 1051
MaeI	CTAG	1 cut(s)	834
MaeIII	GTNAC	4 cut(s)	79, 338, 665, 1270
MalI	GATC	4 cut(s)	385, 846, 966, 1089
MboI	GATC	4 cut(s)	383, 844, 964, 1087
MboII	GAAGA	7 cut(s)	133, 136, 378, 455, 590, 611, 853
MfeI	CAATTG	1 cut(s)	1185
MflI	RGATCY	2 cut(s)	383, 964
MhlI	GDGCHC	1 cut(s)	1125
MluCI	AATT	7 cut(s)	370, 542, 772, 1028, 1073, 1108, 1185
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	4 cut(s)	135, 1038, 1153, 1180
MnlI	CCTC	9 cut(s)	33, 161, 221, 316, 320, 402, 542, 851, 1275
Mph1103I	ATGCAT	1 cut(s)	1066
MroI	TCCGGA	1 cut(s)	348
MseI	TTAA	7 cut(s)	132, 194, 206, 875, 995, 1067, 1230
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	1 cut(s)	349
MspR9I	CCNGG	1 cut(s)	282
MunI	CAATTG	1 cut(s)	1185
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	6 cut(s)	236, 614, 639, 805, 1033, 1151
NdeI	CATATG	2 cut(s)	379, 919
NdeII	GATC	4 cut(s)	383, 844, 964, 1087
NlaIII	CATG	8 cut(s)	290, 336, 400, 601, 715, 930, 1116, 1149
NlaIV	GGNNCC	3 cut(s)	172, 1049, 1263
NmuCI	GTSAC	2 cut(s)	665, 1270
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	601
PaeI	GCATGC	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	923, 1160
PflMI	CCANNNNNTGG	1 cut(s)	1057
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	181, 916, 1253
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PshAI	GACNNNNGTC	1 cut(s)	289
PshBI	ATTAAT	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	172, 1049, 1263
PsuI	RGATCY	2 cut(s)	383, 964
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	7 cut(s)	132, 194, 206, 875, 995, 1067, 1230
SatI	GCNGC	3 cut(s)	180, 915, 1252
Sau3AI	GATC	4 cut(s)	383, 844, 964, 1087
SchI	GAGTC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	1125
SfaNI	GCATC	5 cut(s)	286, 659, 709, 727, 1051
SmiMI	CAYNNNNRTG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	601
Sse9I	AATT	7 cut(s)	370, 542, 772, 1028, 1073, 1108, 1185
SsiI	CCGC	4 cut(s)	364, 642, 740, 1252
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	5 cut(s)	518, 665, 944, 986, 1127
TaqI	TCGA	1 cut(s)	843
TaqII	GACCGA	1 cut(s)	1233
TasI	AATT	7 cut(s)	370, 542, 772, 1028, 1073, 1108, 1185
TauI	GCSGC	1 cut(s)	1254
TfiI	GAWTC	2 cut(s)	923, 1160
Tru1I	TTAA	7 cut(s)	132, 194, 206, 875, 995, 1067, 1230
Tru9I	TTAA	7 cut(s)	132, 194, 206, 875, 995, 1067, 1230
TscAI	CASTG	3 cut(s)	523, 668, 1275
TseFI	GTSAC	2 cut(s)	665, 1270
TseI	GCWGC	2 cut(s)	179, 914
Tsp45I	GTSAC	2 cut(s)	665, 1270
TspDTI	ATGAA	7 cut(s)	68, 378, 450, 915, 1093, 1101, 1257
TspRI	CASTG	3 cut(s)	523, 668, 1275
Van91I	CCANNNNNTGG	1 cut(s)	1057
VneI	GTGCAC	1 cut(s)	1121
VspI	ATTAAT	1 cut(s)	194
XapI	RAATTY	3 cut(s)	370, 772, 1108
XceI	RCATGY	1 cut(s)	601
XspI	CTAG	1 cut(s)	834
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.