Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

42319732 .. 42322251

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGATGAGGTTCTTGGGGGTTTGCATTGTAGTAGCATTTTGTTTCAGCAAATGGGTTGATGGGTTTGTGCAGTACAGTCATAGACGAGATCCCAAAACTGAAATTATAAATAACACTCTGATGGTATCAATAACCCTCATTCTAGGAGCTGAGGCCAAAGGAGCAGTCTGCTTGGATGGAACATTGCCTGCTTATTATTTTAACCGTGGACATGGGTCAGGGGCAAATAGTTGGGTCGTTCACTTTCAGGGTGGAGGATGGTGCAGCAACATCACAGAATGTGTTGCTCGCACAAAAACTCAGTTTGGATCATCAAGATACATGTTACCAGAGACGGGGTTCACTGGAATATTAAGCTTCAAAGCTGAAGAAAATCCAGATTTTTTCAACTGGAATAGAGTACTGATTCCCTCTTGTGATGGTGCTTCTTATTCTGGGGACAGTGAAAATAAGGAAGCACAACTACATTTTAGAGGACAGCGTATATGGTTGGCTTTCATGGAAGAGTTGATGTCATTGGGCATGCGCCATGCCAAGAGGGCTCTTATTTCCGGTTGCTCTGCTGGCGGTCTGACATCTATTTTGCACTGTGATAAGTTTCGTGGCTTATTTAAAAAAAGTACTACAGTGAAGTGCCTGAGTGATGCTGGATTTTTCCCTGACGAGGTCGATATTTCTGGTGAACCTACATTCAGGAATTTTTTTAGTGGTGTAGTAAGCTTGCAGGGGGTGAAAAAAAATCTGCCACGCTTTTGTACTAGACACCTTGACCCTACTTCGTGCTTCTTCCCTCAGAACTTAATCTCCGGAATCAAAACACCACTATTTATACTCAATTCAGCATATGACATATATCAGTTTTACGCCATTTTAGTTCCAGCATCAACAGATCCCAATGGTTTGTGGGATAATTGCAAATTAAACCTTACAAATTGTTCTCCATCTCAGTTACAAATAATGAAAGGATACAGGAATCAAATGCTGAATCTACTAAAACCAATCTCCAAGTCTAAACAAAATGGGATGTCTGTAACTTCATGTTATGCGCATTGTCAAGCTCAGTATCAAGTGATGTGGCATGCTGATAACTCTACACTTATTGGAACCAAGACAATCTCACAATCTGTCGGAGATTGGTATTTTGATCGGGCAGAAGTTAAGGTGTATGATGAAGGTTGCCACTATTTGGTTCCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

400

Amino Acids

44.66

Weight (kDa)

8.52

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	38 - 395	4.9e-149	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
Acc16I	TGCGCA	1 cut(s)	1047
AccB7I	CCANNNNNTGG	1 cut(s)	1186
AccIII	TCCGGA	1 cut(s)	806
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	3 cut(s)	83, 316, 884
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	4 cut(s)	74, 402, 622, 757
AfiI	CCNNNNNNNGG	3 cut(s)	335, 664, 1186
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	361, 388
AloI	GAACNNNNNNTCC	2 cut(s)	788, 820
AluBI	AGCT	5 cut(s)	149, 357, 365, 720, 1058
AluI	AGCT	5 cut(s)	149, 357, 365, 720, 1058
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	3 cut(s)	83, 316, 884
Aor13HI	TCCGGA	1 cut(s)	806
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	4 cut(s)	150, 182, 565, 597
AspLEI	GCGC	2 cut(s)	528, 1048
AsuHPI	GGTGA	2 cut(s)	692, 742
BanII	GRGCYC	1 cut(s)	544
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	6 cut(s)	53, 115, 170, 252, 413, 949
BciVI	GTATCC	1 cut(s)	959
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	2 cut(s)	143, 759
BfmI	CTRYAG	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	959
BglI	GCCNNNNNGGC	1 cut(s)	539
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
BmcAI	AGTACT	2 cut(s)	402, 622
BmiI	GGNNCC	2 cut(s)	1105, 1191
BmrI	ACTGGG	1 cut(s)	1189
BmsI	GCATC	2 cut(s)	634, 890
BmuI	ACTGGG	1 cut(s)	1189
BoxI	GACNNNNGTC	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	2 cut(s)	551, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	788, 818
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 664, 1186
Bse1I	ACTGG	3 cut(s)	349, 395, 1195
Bse3DI	GCAATG	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	806
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	3 cut(s)	181, 263, 1029
BseLI	CCNNNNNNNGG	3 cut(s)	335, 664, 1186
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	6 cut(s)	141, 314, 629, 806, 959, 1073
BseNI	ACTGG	3 cut(s)	349, 395, 1195
BseXI	GCAGC	1 cut(s)	276
BsgI	GTGCAG	2 cut(s)	89, 283
BshFI	GGCC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	552, 807
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	3 cut(s)	335, 664, 1186
BsmAI	GTCTC	1 cut(s)	326
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp13I	TCCGGA	1 cut(s)	806
Bsp143I	GATC	4 cut(s)	88, 308, 889, 1144
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	6 cut(s)	142, 313, 630, 805, 958, 1072
BspEI	TCCGGA	1 cut(s)	806
BspLI	GGNNCC	2 cut(s)	1105, 1191
BspPI	GGATC	3 cut(s)	83, 316, 884
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	349, 395, 1195
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	4 cut(s)	88, 308, 889, 1144
Bst4CI	ACNGT	5 cut(s)	77, 206, 443, 590, 628
Bst6I	CTCTTC	1 cut(s)	498
BstC8I	GCNNGC	6 cut(s)	189, 289, 524, 565, 722, 1080
BstDEI	CTNAG	6 cut(s)	150, 300, 638, 792, 945, 1059
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	3 cut(s)	181, 263, 1029
BstHHI	GCGC	2 cut(s)	528, 1048
BstKTI	GATC	4 cut(s)	91, 311, 892, 1147
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	4 cut(s)	88, 308, 889, 1144
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 539, 564
BstNSI	RCATGY	3 cut(s)	325, 526, 1082
BstPAI	GACNNNNGTC	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	624
BstV1I	GCAGC	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	88, 889
BstYI	RGATCY	2 cut(s)	88, 889
BsuI	GTATCC	1 cut(s)	959
BsuRI	GGCC	1 cut(s)	155
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	181, 263, 1029
BtsIMutI	CAGTG	4 cut(s)	342, 448, 586, 633
Cac8I	GCNNGC	6 cut(s)	189, 289, 524, 565, 722, 1080
CfoI	GCGC	2 cut(s)	528, 1048
Csp6I	GTAC	4 cut(s)	73, 401, 621, 756
CspCI	CAANNNNNGTGG	2 cut(s)	1055, 1090
CviAII	CATG	7 cut(s)	212, 322, 499, 523, 530, 1038, 1079
CviJI	RGCY	9 cut(s)	149, 155, 357, 365, 494, 542, 606, 720, 1058
CviKI_1	RGCY	9 cut(s)	149, 155, 357, 365, 494, 542, 606, 720, 1058
CviQI	GTAC	4 cut(s)	73, 401, 621, 756
DdeI	CTNAG	6 cut(s)	150, 300, 638, 792, 945, 1059
DpnI	GATC	4 cut(s)	90, 310, 891, 1146
DpnII	GATC	4 cut(s)	88, 308, 889, 1144
DraI	TTTAAA	1 cut(s)	613
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	7 cut(s)	215, 325, 502, 526, 533, 1041, 1082
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	7 cut(s)	211, 321, 498, 522, 529, 1037, 1078
FauNDI	CATATG	1 cut(s)	844
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	3 cut(s)	188, 270, 1036
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	1 cut(s)	265
FspAI	RTGCGCAY	1 cut(s)	1047
FspBI	CTAG	2 cut(s)	143, 759
FspI	TGCGCA	1 cut(s)	1047
GlaI	GCGC	2 cut(s)	527, 1047
GluI	GCNGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	552, 807
HhaI	GCGC	2 cut(s)	528, 1048
Hin1II	CATG	7 cut(s)	215, 325, 502, 526, 533, 1041, 1082
Hin6I	GCGC	2 cut(s)	526, 1046
HinP1I	GCGC	2 cut(s)	526, 1046
HindIII	AAGCTT	2 cut(s)	355, 718
HinfI	GANTC	4 cut(s)	406, 810, 973, 985
HpaII	CCGG	2 cut(s)	552, 807
HphI	GGTGA	2 cut(s)	692, 742
Hpy166II	GTNNAC	4 cut(s)	209, 241, 342, 683
Hpy188I	TCNGA	4 cut(s)	120, 573, 795, 1130
Hpy188III	TCNNGA	4 cut(s)	315, 377, 694, 807
Hpy8I	GTNNAC	4 cut(s)	209, 241, 342, 683
HpyAV	CCTTC	1 cut(s)	1166
HpyCH4III	ACNGT	5 cut(s)	77, 206, 443, 590, 628
HpyCH4V	TGCA	6 cut(s)	24, 70, 264, 586, 724, 915
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 539, 564
HpyF3I	CTNAG	6 cut(s)	150, 300, 638, 792, 945, 1059
Hsp92II	CATG	7 cut(s)	215, 325, 502, 526, 533, 1041, 1082
HspAI	GCGC	2 cut(s)	526, 1046
Kpn2I	TCCGGA	1 cut(s)	806
Kzo9I	GATC	4 cut(s)	88, 308, 889, 1144
LmnI	GCTCC	2 cut(s)	146, 161
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	634, 890
MaeI	CTAG	2 cut(s)	143, 759
MaeIII	GTNAC	3 cut(s)	324, 948, 1030
MalI	GATC	4 cut(s)	90, 310, 891, 1146
MboI	GATC	4 cut(s)	88, 308, 889, 1144
MboII	GAAGA	3 cut(s)	380, 515, 778
MflI	RGATCY	2 cut(s)	88, 889
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	6 cut(s)	102, 697, 835, 910, 917, 931
MmeI	TCCRAC	1 cut(s)	1108
MnlI	CCTC	8 cut(s)	145, 146, 248, 421, 467, 531, 658, 801
MroI	TCCGGA	1 cut(s)	806
MseI	TTAA	6 cut(s)	201, 353, 612, 800, 920, 1158
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	2 cut(s)	552, 807
MwoI	GCNNNNNNNGC	3 cut(s)	161, 539, 564
NdeI	CATATG	1 cut(s)	844
NdeII	GATC	4 cut(s)	88, 308, 889, 1144
NlaIII	CATG	7 cut(s)	215, 325, 502, 526, 533, 1041, 1082
NlaIV	GGNNCC	2 cut(s)	1105, 1191
NsbI	TGCGCA	1 cut(s)	1047
NspI	RCATGY	3 cut(s)	325, 526, 1082
PaeI	GCATGC	2 cut(s)	526, 1082
PciI	ACATGT	1 cut(s)	321
PfeI	GAWTC	4 cut(s)	406, 810, 973, 985
PflFI	GACNNNGTC	1 cut(s)	665
PflMI	CCANNNNNTGG	1 cut(s)	1186
PkrI	GCNGC	1 cut(s)	266
PscI	ACATGT	1 cut(s)	321
PshAI	GACNNNNGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	1105, 1191
PsuI	RGATCY	2 cut(s)	88, 889
PsyI	GACNNNGTC	1 cut(s)	665
RsaI	GTAC	4 cut(s)	74, 402, 622, 757
RsaNI	GTAC	4 cut(s)	73, 401, 621, 756
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	6 cut(s)	201, 353, 612, 800, 920, 1158
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	4 cut(s)	88, 308, 889, 1144
ScaI	AGTACT	2 cut(s)	402, 622
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	2 cut(s)	634, 890
SfcI	CTRYAG	1 cut(s)	624
SmiMI	CAYNNNNRTG	1 cut(s)	119
SphI	GCATGC	2 cut(s)	526, 1082
Sse9I	AATT	6 cut(s)	102, 697, 835, 910, 917, 931
SsiI	CCGC	1 cut(s)	567
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	2 cut(s)	143, 759
TaaI	ACNGT	5 cut(s)	77, 206, 443, 590, 628
TaqI	TCGA	1 cut(s)	669
TasI	AATT	6 cut(s)	102, 697, 835, 910, 917, 931
TatI	WGTACW	4 cut(s)	72, 400, 620, 755
TfiI	GAWTC	4 cut(s)	406, 810, 973, 985
Tru1I	TTAA	6 cut(s)	201, 353, 612, 800, 920, 1158
Tru9I	TTAA	6 cut(s)	201, 353, 612, 800, 920, 1158
TscAI	CASTG	4 cut(s)	349, 448, 593, 633
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	4 cut(s)	487, 974, 1026, 1185
TspRI	CASTG	4 cut(s)	349, 448, 593, 633
Tth111I	GACNNNGTC	1 cut(s)	665
Van91I	CCANNNNNTGG	1 cut(s)	1186
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	3 cut(s)	325, 526, 1082
XspI	CTAG	2 cut(s)	143, 759
ZrmI	AGTACT	2 cut(s)	402, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.