Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

27929542 .. 27933393

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1198100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGTAGGGCCAACCCTCATCGAAGGAGCTGCTGCCAAAGGAGCAGTCTGCTTGGATGGAACAGTACCTGCTTATCATTTGCATCGTGGATATGGATCAGGGGCGAATAGTTGGCTCATTCGCCTTGATGCAAAAGTGAGTTTCTCCTTCCTACAAGCATTTGGCTTCATCGTGTTGAGCGAATCCACAATTAGCGACGTGAGTAATTCCGTTGCCCCTGATCAAGTGATTCCCAGGTTATATCCTCGTAGCAACGTCGAGCGAGTTCTGTTGCCCTGGTTGAGTGATTCCCAGGTTACTACCCCTTGTCTTTTCGAGACCCTTGGTCTTTTTTGCATCAAGTGGTATCAGAGCAGGTTTTTCGCTGCAGTTGAAGACTATGGTTGTGATTACAATTTGTTGGAAGAGCACACTGTCGAAGAAATCAGTTTTGTCAATTGGAATTCCCCACCAATTTATGATGAGTATGTTGATGATGATGACGACCTCAAAAAGAACTTTTTTGATGGGTGTTCTCTACTAATTTATGGCGAGCAAGATGAAGATTACAAGGTTATGTTTACGATGGTTATCCATCAAGTATTGCTTCGCTATTGTGACGGCGCTTCTTTCTTGGGGACAGCGAAAATCAGGTGGGCTCTTCTTTCTGGTGTCTCTGCCGGCGGTCTGTCATCCATTTTACACTGTGATGAGTTTCGGGGCTTATTTCCCACAGCTACAAAAGTGAAGTGCCTGAGTTATGGTGGATTTTTTCTCGACGCGGTTGATGTTTCCGGTGGACGCGAACTCAGGGATCACTATAGTGATGTTGTAGGCTTGCAGGGGACAATAGCAGAAGCTGTTGGAGAATGGTTTTTCGACCGAGCAGATGTTAGCGTTGTCGATGAAACTTGCCGCCATCTGGCCCTCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

305

Amino Acids

33.71

Weight (kDa)

4.57

Isoelectric Point (pI)

31.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	2 - 43	4.3e-14	Pectinacetylesterase
PAE	PF03283	213 - 275	2.2e-19	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	76, 345
AccII	CGCG	2 cut(s)	761, 783
AciI	CCGC	3 cut(s)	663, 761, 895
AclWI	GGATC	2 cut(s)	103, 801
AcsI	RAATTY	1 cut(s)	442
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	901
AgsI	TTSAA	1 cut(s)	374
AhdI	GACNNNNNGTC	1 cut(s)	324
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	3 cut(s)	233, 275, 291
AleI	CACNNNNGTG	1 cut(s)	801
AluBI	AGCT	3 cut(s)	29, 716, 839
AluI	AGCT	3 cut(s)	29, 716, 839
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	311, 658
AlwI	GGATC	2 cut(s)	103, 801
AlwNI	CAGNNNCTG	2 cut(s)	68, 839
AoxI	GGCC	2 cut(s)	8, 903
ApeKI	GCWGC	3 cut(s)	29, 32, 365
ApoI	RAATTY	1 cut(s)	442
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	8, 904
BanII	GRGCYC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	16, 19, 352
BccI	CCATC	5 cut(s)	50, 500, 559, 582, 906
BceAI	ACGGC	1 cut(s)	616
BcgI	CGANNNNNNTGC	4 cut(s)	11, 45, 343, 377
BciT130I	CCWGG	3 cut(s)	235, 277, 293
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	2 cut(s)	311, 658
BfmI	CTRYAG	2 cut(s)	366, 799
BfoI	RGCGCY	1 cut(s)	606
BfuAI	ACCTGC	2 cut(s)	76, 345
BisI	GCNGC	4 cut(s)	30, 33, 366, 895
BlsI	GCNGC	4 cut(s)	31, 34, 367, 896
Bme1390I	CCNGG	3 cut(s)	235, 277, 293
BmeRI	GACNNNNNGTC	1 cut(s)	324
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	8, 904
BmrFI	CCNGG	3 cut(s)	235, 277, 293
BmsI	GCATC	3 cut(s)	91, 118, 345
BpiI	GAAGAC	1 cut(s)	381
BsaBI	GATNNNNATC	2 cut(s)	94, 569
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	5 cut(s)	233, 275, 291, 322, 907
BsaWI	WCCGGW	1 cut(s)	773
Bsc4I	CCNNNNNNNGG	1 cut(s)	901
Bse118I	RCCGGY	1 cut(s)	659
Bse8I	GATNNNNATC	2 cut(s)	94, 569
BseBI	CCWGG	3 cut(s)	235, 277, 293
BseDI	CCNNGG	5 cut(s)	233, 275, 291, 322, 907
BseGI	GGATG	2 cut(s)	61, 671
BseJI	GATNNNNATC	2 cut(s)	94, 569
BseLI	CCNNNNNNNGG	1 cut(s)	901
BseMII	CTCAG	2 cut(s)	725, 802
BseXI	GCAGC	3 cut(s)	16, 19, 352
Bsh1236I	CGCG	2 cut(s)	761, 783
Bsh1285I	CGRYCG	1 cut(s)	862
BshFI	GGCC	2 cut(s)	10, 905
BsiEI	CGRYCG	1 cut(s)	862
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	660, 774
BslFI	GGGAC	2 cut(s)	631, 838
BslI	CCNNNNNNNGG	1 cut(s)	901
BsmAI	GTCTC	2 cut(s)	311, 658
BsmFI	GGGAC	2 cut(s)	631, 838
BsnI	GGCC	2 cut(s)	10, 905
Bso31I	GGTCTC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	411, 640
Bsp143I	GATC	3 cut(s)	95, 220, 793
BspACI	CCGC	3 cut(s)	663, 761, 895
BspANI	GGCC	2 cut(s)	10, 905
BspCNI	CTCAG	2 cut(s)	726, 801
BspFNI	CGCG	2 cut(s)	761, 783
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	2 cut(s)	76, 345
BspPI	GGATC	2 cut(s)	103, 801
BspQI	GCTCTTC	2 cut(s)	399, 645
BspTNI	GGTCTC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	659
BssAI	RCCGGY	1 cut(s)	659
BssECI	CCNNGG	5 cut(s)	233, 275, 291, 322, 907
BssMI	GATC	3 cut(s)	95, 220, 793
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	3 cut(s)	235, 277, 293
Bst4CI	ACNGT	3 cut(s)	64, 415, 686
Bst6I	CTCTTC	2 cut(s)	399, 645
BstC8I	GCNNGC	3 cut(s)	533, 661, 818
BstDEI	CTNAG	2 cut(s)	734, 788
BstF5I	GGATG	2 cut(s)	61, 671
BstFNI	CGCG	2 cut(s)	761, 783
BstH2I	RGCGCY	1 cut(s)	606
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	3 cut(s)	98, 223, 796
BstMAI	GTCTC	2 cut(s)	311, 658
BstMBI	GATC	3 cut(s)	95, 220, 793
BstMCI	CGRYCG	1 cut(s)	862
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	3 cut(s)	235, 277, 293
BstSCI	CCNGG	3 cut(s)	233, 275, 291
BstSFI	CTRYAG	2 cut(s)	366, 799
BstUI	CGCG	2 cut(s)	761, 783
BstV1I	GCAGC	3 cut(s)	16, 19, 352
BstV2I	GAAGAC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	10, 905
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	61, 671
BtsIMutI	CAGTG	2 cut(s)	411, 682
BveI	ACCTGC	2 cut(s)	76, 345
Cac8I	GCNNGC	3 cut(s)	533, 661, 818
CaiI	CAGNNNCTG	2 cut(s)	68, 839
CfoI	GCGC	1 cut(s)	605
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	2 cut(s)	8, 904
CseI	GACGC	2 cut(s)	767, 789
Csp6I	GTAC	1 cut(s)	65
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	2 cut(s)	734, 788
DpnI	GATC	3 cut(s)	97, 222, 795
DpnII	GATC	3 cut(s)	95, 220, 793
DriI	GACNNNNNGTC	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	399, 645
Eam1105I	GACNNNNNGTC	1 cut(s)	324
EarI	CTCTTC	2 cut(s)	399, 645
Eco130I	CCWWGG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	640
Eco31I	GGTCTC	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	3 cut(s)	233, 275, 291
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	322
FaiI	YATR	9 cut(s)	93, 241, 381, 459, 468, 528, 557, 741, 801
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	2 cut(s)	631, 838
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	30, 33, 366, 895
FokI	GGATG	2 cut(s)	68, 658
FriOI	GRGCYC	1 cut(s)	640
Fsp4HI	GCNGC	4 cut(s)	30, 33, 366, 895
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	4 cut(s)	30, 33, 366, 895
HaeII	RGCGCY	1 cut(s)	606
HaeIII	GGCC	2 cut(s)	10, 905
HapII	CCGG	2 cut(s)	660, 774
HgaI	GACGC	2 cut(s)	767, 789
HhaI	GCGC	1 cut(s)	605
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HinfI	GANTC	3 cut(s)	182, 229, 287
HpaII	CCGG	2 cut(s)	660, 774
Hpy166II	GTNNAC	2 cut(s)	561, 779
Hpy188I	TCNGA	2 cut(s)	351, 911
Hpy188III	TCNNGA	2 cut(s)	316, 755
Hpy8I	GTNNAC	2 cut(s)	561, 779
Hpy99I	CGWCG	3 cut(s)	200, 260, 761
HpyAV	CCTTC	2 cut(s)	17, 157
HpyCH4III	ACNGT	3 cut(s)	64, 415, 686
HpyCH4IV	ACGT	2 cut(s)	198, 255
HpyCH4V	TGCA	5 cut(s)	82, 131, 336, 368, 820
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	734, 788
HpySE526I	ACGT	2 cut(s)	198, 255
HspAI	GCGC	1 cut(s)	603
KroI	GCCGGC	1 cut(s)	659
KroNI	GCCGGC	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	95, 220, 793
LguI	GCTCTTC	2 cut(s)	399, 645
LmnI	GCTCC	2 cut(s)	26, 41
Lsp1109I	GCAGC	3 cut(s)	16, 19, 352
LweI	GCATC	3 cut(s)	91, 118, 345
MaeII	ACGT	2 cut(s)	198, 255
MaeIII	GTNAC	2 cut(s)	295, 596
MalI	GATC	3 cut(s)	97, 222, 795
MboI	GATC	3 cut(s)	95, 220, 793
MboII	GAAGA	5 cut(s)	386, 416, 431, 554, 632
MfeI	CAATTG	1 cut(s)	436
MhlI	GDGCHC	2 cut(s)	411, 640
MluCI	AATT	7 cut(s)	189, 205, 394, 436, 442, 453, 522
MmeI	TCCRAC	2 cut(s)	381, 823
MnlI	CCTC	3 cut(s)	26, 255, 497
MroNI	GCCGGC	1 cut(s)	659
MslI	CAYNNNNRTG	2 cut(s)	687, 801
MspI	CCGG	2 cut(s)	660, 774
MspR9I	CCNGG	3 cut(s)	235, 277, 293
MunI	CAATTG	1 cut(s)	436
MvaI	CCWGG	3 cut(s)	235, 277, 293
MvnI	CGCG	2 cut(s)	761, 783
MwoI	GCNNNNNNNGC	1 cut(s)	41
NaeI	GCCGGC	1 cut(s)	661
NdeII	GATC	3 cut(s)	95, 220, 793
NgoMIV	GCCGGC	1 cut(s)	659
NmuCI	GTSAC	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	801
PciSI	GCTCTTC	2 cut(s)	399, 645
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	661
PfeI	GAWTC	3 cut(s)	182, 229, 287
PkrI	GCNGC	4 cut(s)	31, 34, 367, 896
Psp6I	CCWGG	3 cut(s)	233, 275, 291
PspGI	CCWGG	3 cut(s)	233, 275, 291
PspPI	GGNCC	2 cut(s)	8, 904
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	2 cut(s)	68, 839
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	2 cut(s)	687, 801
SapI	GCTCTTC	2 cut(s)	399, 645
SatI	GCNGC	4 cut(s)	30, 33, 366, 895
Sau3AI	GATC	3 cut(s)	95, 220, 793
Sau96I	GGNCC	2 cut(s)	8, 904
ScrFI	CCNGG	3 cut(s)	235, 277, 293
SduI	GDGCHC	2 cut(s)	411, 640
SfaNI	GCATC	3 cut(s)	91, 118, 345
SfcI	CTRYAG	2 cut(s)	366, 799
SmiMI	CAYNNNNRTG	2 cut(s)	687, 801
Sse9I	AATT	7 cut(s)	189, 205, 394, 436, 442, 453, 522
SsiI	CCGC	3 cut(s)	663, 761, 895
StyD4I	CCNGG	3 cut(s)	233, 275, 291
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	3 cut(s)	64, 415, 686
TaiI	ACGT	2 cut(s)	201, 258
TaqI	TCGA	7 cut(s)	21, 258, 315, 417, 756, 858, 882
TaqII	GACCGA	1 cut(s)	876
TasI	AATT	7 cut(s)	189, 205, 394, 436, 442, 453, 522
TauI	GCSGC	1 cut(s)	897
TfiI	GAWTC	3 cut(s)	182, 229, 287
TscAI	CASTG	2 cut(s)	418, 689
TseFI	GTSAC	1 cut(s)	596
TseI	GCWGC	3 cut(s)	29, 32, 365
Tsp45I	GTSAC	1 cut(s)	596
TspDTI	ATGAA	3 cut(s)	157, 555, 900
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	2 cut(s)	418, 689
XapI	RAATTY	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.