Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Forward (+)

20563123 .. 20566304

Gene Structure 3182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGAAGCTTTTCTGGGTTAGCATTGTGATTTCACTTGCTTTCAGCAAATGGGCTGCTGGGTTTATGGAGTACGGCTTCAATGAAACAGAGATGGCTTTGTTGGAGGGATATGGAGAATCAAAGGTTGGAGCTAACTTGCTGATGGTAGGACTGACCCTCATTGGAGGAGCTGGGGCCAAAGGAGCAGTCTGCTTGGATGGAACCTTACCGGGGTATCATTTGCATCGCGGATACGGGTCAGGAGCAAATAGTTGGCTCATTCAATTGGAGGGGGGAGGATGGTGTAACAACATTAGAACTTGTGTTTATCGAAAAACAACAAGGCGGGGATCATCAAAATACATGGAAAAACAGTTGGTATTCAGTGGAATACTGAGCAATAAAGCTGAAGAAAATCCTGATTTTTTCAACTGGAACAGAGTCAAGGTTCGTTATTGCGATGGTGCTTCTTTTTCTGGGGATAGTGAAGATAAGGCCAAGGAACTGCAATTTAGAGGAGAGCGTATATGGTTGGCTGCAATGGAAGACTTGAAGTCAAAGGGCATGAGCAACGCCAAGCAGGCTCTTCTTTCGGGTTGCTCTGCCGGTGGTGTTGCAGCTATTTTGCACTGTGATAAGTTCCGGGGTTTAATGCCAGGAACTACGAAAGTGAAGTGCCTGAGTGATGCTGGATTGTTTCTTGATGCGAATGACGTTTCTGGTGGACGCACACTCAGGAATTTATATGGTGGCATTGTCGGCTTGCAGTGCTTCTTCCCTCAGAACTTGATCGATCCAGCATCAAAACCCCACTGTTTATACTCAATGCAGCATATGATTCGTGGCAGCCAGACCAGTTTAGCTCCACCGGCAGCAGATCGTGCCGGCTACTGGCGCGATTGCAGATTAAACCATGAAAAATGTACTCCATCACAGATCAATTTTCTTCAAGGATTCAGGAATCAAATGCTGAATGCAGTAAAACAGTTCTCTATGTCTGAACAAAACGGGTTGTTTATAAATTCGTGTTTTGCGCACTGCCAATCCGAGAGGCAGGATACATGGTTTGCTGATGATTCTCCAGTTATTGGAAAGAAGGCAATTGCTATAGCAGTTGGAGATTGGTATTTCGACCGAACAAGCGTGAAGATCATAGATTGTCCCTACCCATGTGACAATTCTTGCCACAATCTGAATTTCGAAAAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

397

Amino Acids

43.7

Weight (kDa)

8.51

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	998
Acc16I	TGCGCA	1 cut(s)	1014
AccB7I	CCANNNNNTGG	1 cut(s)	1067
AccII	CGCG	2 cut(s)	228, 876
AciI	CCGC	2 cut(s)	228, 325
AclWI	GGATC	2 cut(s)	337, 767
AcsI	RAATTY	3 cut(s)	718, 1000, 1174
AcuI	CTGAAG	1 cut(s)	408
AfaI	GTAC	2 cut(s)	71, 904
AfiI	CCNNNNNNNGG	3 cut(s)	210, 870, 1067
AgsI	TTSAA	5 cut(s)	79, 263, 409, 532, 929
AhdI	GACNNNNNGTC	1 cut(s)	532
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	7 cut(s)	7, 131, 170, 386, 599, 842, 1187
AluI	AGCT	7 cut(s)	7, 131, 170, 386, 599, 842, 1187
AlwI	GGATC	2 cut(s)	337, 767
AoxI	GGCC	2 cut(s)	174, 474
ApeKI	GCWGC	6 cut(s)	53, 515, 596, 808, 825, 851
ApoI	RAATTY	3 cut(s)	718, 1000, 1174
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	876, 1015
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	210, 623
AsuII	TTCGAA	1 cut(s)	1179
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	6 cut(s)	40, 502, 608, 820, 837, 863
BccI	CCATC	6 cut(s)	85, 136, 191, 273, 434, 916
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciT130I	CCWGG	1 cut(s)	636
BciVI	GTATCC	2 cut(s)	224, 1030
BcnI	CCSGG	2 cut(s)	210, 623
BfmI	CTRYAG	1 cut(s)	1086
BfuI	GTATCC	2 cut(s)	224, 1030
BglI	GCCNNNNNGGC	1 cut(s)	560
BisI	GCNGC	6 cut(s)	54, 516, 597, 809, 826, 852
BlsI	GCNGC	6 cut(s)	55, 517, 598, 810, 827, 853
Bme1390I	CCNGG	3 cut(s)	210, 623, 636
BmeRI	GACNNNNNGTC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	2 cut(s)	175, 202
BmrFI	CCNGG	3 cut(s)	210, 623, 636
BmsI	GCATC	4 cut(s)	232, 655, 673, 788
BpiI	GAAGAC	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	1044
Bpu14I	TTCGAA	1 cut(s)	1179
BpuMI	CCSGG	2 cut(s)	210, 623
Bsa29I	ATCGAT	1 cut(s)	771
BsaJI	CCNNGG	3 cut(s)	209, 477, 622
Bsc4I	CCNNNNNNNGG	3 cut(s)	210, 870, 1067
Bse118I	RCCGGY	3 cut(s)	584, 847, 863
Bse1I	ACTGG	4 cut(s)	416, 834, 875, 1061
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	1 cut(s)	636
BseCI	ATCGAT	1 cut(s)	771
BseDI	CCNNGG	3 cut(s)	209, 477, 622
BseGI	GGATG	2 cut(s)	202, 284
BseLI	CCNNNNNNNGG	3 cut(s)	210, 870, 1067
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	4 cut(s)	365, 650, 727, 773
BseNI	ACTGG	4 cut(s)	416, 834, 875, 1061
BseRI	GAGGAG	2 cut(s)	180, 510
BseXI	GCAGC	6 cut(s)	40, 502, 608, 820, 837, 863
BseYI	CCCAGC	2 cut(s)	56, 170
Bsh1236I	CGCG	2 cut(s)	228, 876
Bsh1285I	CGRYCG	1 cut(s)	1114
BshFI	GGCC	2 cut(s)	176, 476
BshVI	ATCGAT	1 cut(s)	771
BsiEI	CGRYCG	1 cut(s)	1114
BsiSI	CCGG	5 cut(s)	209, 585, 622, 848, 864
BslFI	GGGAC	1 cut(s)	1125
BslI	CCNNNNNNNGG	3 cut(s)	210, 870, 1067
BsmFI	GGGAC	1 cut(s)	1125
BsmI	GAATGC	1 cut(s)	958
BsnI	GGCC	2 cut(s)	176, 476
Bsp119I	TTCGAA	1 cut(s)	1179
Bsp143I	GATC	6 cut(s)	329, 768, 772, 856, 915, 1128
BspACI	CCGC	2 cut(s)	228, 325
BspANI	GGCC	2 cut(s)	176, 476
BspCNI	CTCAG	4 cut(s)	366, 651, 726, 772
BspDI	ATCGAT	1 cut(s)	771
BspFNI	CGCG	2 cut(s)	228, 876
BspLI	GGNNCC	2 cut(s)	175, 202
BspPI	GGATC	2 cut(s)	337, 767
BspQI	GCTCTTC	1 cut(s)	570
BspT104I	TTCGAA	1 cut(s)	1179
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	3 cut(s)	584, 847, 863
BsrI	ACTGG	4 cut(s)	416, 834, 875, 1061
BssAI	RCCGGY	3 cut(s)	584, 847, 863
BssECI	CCNNGG	3 cut(s)	209, 477, 622
BssMI	GATC	6 cut(s)	329, 768, 772, 856, 915, 1128
BssT1I	CCWWGG	1 cut(s)	477
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	4 cut(s)	354, 611, 794, 966
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstBI	TTCGAA	1 cut(s)	1179
BstC8I	GCNNGC	3 cut(s)	561, 743, 865
BstDEI	CTNAG	5 cut(s)	374, 659, 713, 759, 1188
BstF5I	GGATG	2 cut(s)	202, 284
BstFNI	CGCG	2 cut(s)	228, 876
BstHHI	GCGC	2 cut(s)	876, 1015
BstKTI	GATC	6 cut(s)	332, 771, 775, 859, 918, 1131
BstMBI	GATC	6 cut(s)	329, 768, 772, 856, 915, 1128
BstMCI	CGRYCG	1 cut(s)	1114
BstMWI	GCNNNNNNNGC	7 cut(s)	182, 560, 738, 747, 848, 860, 873
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	3 cut(s)	208, 621, 634
BstSFI	CTRYAG	1 cut(s)	1086
BstUI	CGCG	2 cut(s)	228, 876
BstV1I	GCAGC	6 cut(s)	40, 502, 608, 820, 837, 863
BstV2I	GAAGAC	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	771
BsuI	GTATCC	2 cut(s)	224, 1030
BsuRI	GGCC	2 cut(s)	176, 476
BsuTUI	ATCGAT	1 cut(s)	771
BtgZI	GCGATG	2 cut(s)	209, 453
BtsCI	GGATG	2 cut(s)	202, 284
BtsI	GCAGTG	2 cut(s)	752, 1015
BtsIMutI	CAGTG	5 cut(s)	370, 607, 752, 790, 1015
Cac8I	GCNNGC	3 cut(s)	561, 743, 865
CfoI	GCGC	2 cut(s)	876, 1015
Cfr10I	RCCGGY	3 cut(s)	584, 847, 863
Cfr13I	GGNCC	1 cut(s)	174
ClaI	ATCGAT	1 cut(s)	771
CseI	GACGC	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	70, 903
CviAII	CATG	5 cut(s)	343, 544, 893, 1041, 1149
CviQI	GTAC	2 cut(s)	70, 903
DdeI	CTNAG	5 cut(s)	374, 659, 713, 759, 1188
DpnI	GATC	6 cut(s)	331, 770, 774, 858, 917, 1130
DpnII	GATC	6 cut(s)	329, 768, 772, 856, 915, 1128
DriI	GACNNNNNGTC	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	570
Eam1105I	GACNNNNNGTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	5 cut(s)	346, 547, 896, 1044, 1152
FaqI	GGGAC	1 cut(s)	1125
FatI	CATG	5 cut(s)	342, 543, 892, 1040, 1148
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	813
Fnu4HI	GCNGC	6 cut(s)	54, 516, 597, 809, 826, 852
FokI	GGATG	2 cut(s)	209, 291
Fsp4HI	GCNGC	6 cut(s)	54, 516, 597, 809, 826, 852
FspI	TGCGCA	1 cut(s)	1014
GlaI	GCGC	2 cut(s)	875, 1014
GluI	GCNGC	6 cut(s)	54, 516, 597, 809, 826, 852
GsaI	CCCAGC	2 cut(s)	60, 174
GsuI	CTGGAG	1 cut(s)	1044
HaeIII	GGCC	2 cut(s)	176, 476
HapII	CCGG	5 cut(s)	209, 585, 622, 848, 864
HgaI	GACGC	1 cut(s)	714
HhaI	GCGC	2 cut(s)	876, 1015
Hin1II	CATG	5 cut(s)	346, 547, 896, 1044, 1152
Hin6I	GCGC	2 cut(s)	874, 1013
HinP1I	GCGC	2 cut(s)	874, 1013
HindIII	AAGCTT	2 cut(s)	5, 1185
HinfI	GANTC	6 cut(s)	116, 420, 817, 933, 940, 1055
HpaII	CCGG	5 cut(s)	209, 585, 622, 848, 864
Hpy166II	GTNNAC	1 cut(s)	704
Hpy188I	TCNGA	4 cut(s)	762, 979, 1027, 1173
Hpy188III	TCNNGA	5 cut(s)	240, 398, 680, 715, 937
Hpy8I	GTNNAC	1 cut(s)	704
HpyAV	CCTTC	1 cut(s)	1069
HpyCH4III	ACNGT	4 cut(s)	354, 611, 794, 966
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	9 cut(s)	223, 487, 518, 596, 607, 745, 808, 882, 956
HpyF10VI	GCNNNNNNNGC	7 cut(s)	182, 560, 738, 747, 848, 860, 873
HpyF3I	CTNAG	5 cut(s)	374, 659, 713, 759, 1188
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	5 cut(s)	346, 547, 896, 1044, 1152
HspAI	GCGC	2 cut(s)	874, 1013
KroI	GCCGGC	1 cut(s)	863
KroNI	GCCGGC	1 cut(s)	865
Kzo9I	GATC	6 cut(s)	329, 768, 772, 856, 915, 1128
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	5 cut(s)	128, 167, 182, 242, 847
Lsp1109I	GCAGC	6 cut(s)	40, 502, 608, 820, 837, 863
LweI	GCATC	4 cut(s)	232, 655, 673, 788
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	2 cut(s)	284, 1151
MalI	GATC	6 cut(s)	331, 770, 774, 858, 917, 1130
MboI	GATC	6 cut(s)	329, 768, 772, 856, 915, 1128
MboII	GAAGA	7 cut(s)	401, 479, 536, 557, 745, 917, 1138
MfeI	CAATTG	2 cut(s)	263, 1080
MluCI	AATT	8 cut(s)	263, 488, 718, 919, 1000, 1080, 1156, 1174
MlyI	GAGTC	1 cut(s)	429
MmeI	TCCRAC	3 cut(s)	81, 106, 1075
MnlI	CCTC	8 cut(s)	97, 158, 167, 262, 269, 488, 768, 1023
MroNI	GCCGGC	1 cut(s)	863
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	629, 887
MspI	CCGG	5 cut(s)	209, 585, 622, 848, 864
MspR9I	CCNGG	3 cut(s)	210, 623, 636
MunI	CAATTG	2 cut(s)	263, 1080
Mva1269I	GAATGC	1 cut(s)	958
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	2 cut(s)	228, 876
MwoI	GCNNNNNNNGC	7 cut(s)	182, 560, 738, 747, 848, 860, 873
NaeI	GCCGGC	1 cut(s)	865
NciI	CCSGG	2 cut(s)	210, 623
NdeI	CATATG	1 cut(s)	813
NdeII	GATC	6 cut(s)	329, 768, 772, 856, 915, 1128
NgoMIV	GCCGGC	1 cut(s)	863
NlaIII	CATG	5 cut(s)	346, 547, 896, 1044, 1152
NlaIV	GGNNCC	2 cut(s)	175, 202
NmuCI	GTSAC	1 cut(s)	1151
NsbI	TGCGCA	1 cut(s)	1014
NspV	TTCGAA	1 cut(s)	1179
PciSI	GCTCTTC	1 cut(s)	570
PctI	GAATGC	1 cut(s)	958
PdiI	GCCGGC	1 cut(s)	865
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	116, 817, 933, 940, 1055
PflMI	CCANNNNNTGG	1 cut(s)	1067
PkrI	GCNGC	6 cut(s)	55, 517, 598, 810, 827, 853
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PsiI	TTATAA	1 cut(s)	998
Psp6I	CCWGG	1 cut(s)	634
PspFI	CCCAGC	2 cut(s)	56, 170
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	175, 202
PspPI	GGNCC	1 cut(s)	174
RsaI	GTAC	2 cut(s)	71, 904
RsaNI	GTAC	2 cut(s)	70, 903
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	629, 887
SatI	GCNGC	6 cut(s)	54, 516, 597, 809, 826, 852
Sau3AI	GATC	6 cut(s)	329, 768, 772, 856, 915, 1128
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	3 cut(s)	210, 623, 636
SfaNI	GCATC	4 cut(s)	232, 655, 673, 788
SfcI	CTRYAG	1 cut(s)	1086
SfuI	TTCGAA	1 cut(s)	1179
Sse9I	AATT	8 cut(s)	263, 488, 718, 919, 1000, 1080, 1156, 1174
SsiI	CCGC	2 cut(s)	228, 325
StyD4I	CCNGG	3 cut(s)	208, 621, 634
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	4 cut(s)	354, 611, 794, 966
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	4 cut(s)	310, 771, 1110, 1179
TaqII	GACCGA	1 cut(s)	1128
TasI	AATT	8 cut(s)	263, 488, 718, 919, 1000, 1080, 1156, 1174
TatI	WGTACW	1 cut(s)	902
TfiI	GAWTC	5 cut(s)	116, 817, 933, 940, 1055
Tru1I	TTAA	2 cut(s)	629, 887
Tru9I	TTAA	2 cut(s)	629, 887
TscAI	CASTG	5 cut(s)	370, 614, 752, 797, 1022
TseFI	GTSAC	1 cut(s)	1151
TseI	GCWGC	6 cut(s)	53, 515, 596, 808, 825, 851
Tsp45I	GTSAC	1 cut(s)	1151
TspDTI	ATGAA	3 cut(s)	17, 96, 909
TspRI	CASTG	5 cut(s)	370, 614, 752, 797, 1022
Van91I	CCANNNNNTGG	1 cut(s)	1067
XapI	RAATTY	3 cut(s)	718, 1000, 1174
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.