Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001553

Physical Location & Seq

Genomic Coordinates Reverse (-)

7232789 .. 7234313

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAAAAATTGATGTCATTGGGCATGCGCCACGCCAAGAAGGCTCTTATTTCTGGTTGCTCTGCTGGAGGTCTGACATCTATTTTGCACTGTGATAAGTTCCGGGGATTATTTCGAAGAAATACTGAAGTGAAGTGCCTCAGTGATGCTGGATTTTTCCTTGACTCGGTTGACATATCTGGTGCACCAACATTCAGGAATTTTTTCAGTAATGTTGTAAGCTTGCAGGGGGTGAAAGAAAATCTGCCACACTTTTGTACTAGTCGCCTCGATCCTACTTCGTGCTTCTTCCCTCAGAACTTACTTGCCGGCATTAAAACCCCGCTGTTTATACTTAACTCAGCATATGATTCTTTTCAGTTCCAATTCAGCTTAGTTCCAGCATCAGCTGATCCCAACGGCTTATGGAACAGTTGCAAATTAAACGTTACCAACTGTTCCCCAACTCAGTTGCATATTCTGCAAGGATTCAGGAGTCAAATGCTACAGGCACTAAAGCCATTCTCAAAGTCTAACCAAAATGGGATGTTTATAGATTCATGCTATGCACACTGTCAGTCTCAGTTTCAGCTAACGTGGTATGCTGCCAATTCTACAATCATTGGAAACAAGACAATCTCACAGTCCGTCGGAGATTGGTATTTCGACCGTGCAGAAGTTAAGGTCGTTGATAAAAGTTGCCACCATTTGGTTCCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

233

Amino Acids

25.94

Weight (kDa)

8.82

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	1 - 227	5e-91	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001553)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05910 AT3G05910
fragaria_vesca	FvH4_6g08630 FvH4_6g08640 FvH4_6g08640 FvH4_6g08640
malus_domestica	MD04G1184600.v1.1 MD04G1184700.v1.1 MD04G1184800.v1.1 MD12G1197900.v1.1 MD12G1198000.v1.1 MD12G1198100.v1.1 MD12G1198300.v1.1 MD12G1198500.v1.1
prunus_persica	Prupe.6G303100_v2.0.a1 Prupe.6G303200_v2.0.a1
pyrus_communis	pycom04g16380 pycom04g16400 pycom04g16410 pycom11g18250 pycom12g18410 pycom12g18430 pycom12g18460 pycom12g18480
rosa_chinensis	RchiOBHm_Chr3g0458741 RchiOBHm_Chr3g0458751 RchiOBHm_Chr3g0458761
rosa_laevigata	RLG00000025136 RLG00000025137 RLG00000025138
rosa_multiflora	Rmu_sc0001634.1_g000028
rosa_roxburghii	Rroxscaffold_6G00420800 Rroxscaffold_6G00420810
rosa_rugosa	Rorug03G0031600 Rorug03G0031700
rosa_samantha	Rh3AG089200 Rh3AG089300 Rh3AG089400 Rh3BG092000 Rh3BG092100 Rh3BG092200 Rh3CG092400 Rh3CG092500 Rh3CG092600 Rh3DG093100 Rh3DG093200 Rh3DG093300
rosa_wichuraiana	Rw3G007630 Rw3G007640 Rw3G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	688
AciI	CCGC	1 cut(s)	323
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	2 cut(s)	266, 386
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	166, 688
AhlI	ACTAGT	1 cut(s)	260
AluBI	AGCT	4 cut(s)	222, 372, 389, 571
AluI	AGCT	4 cut(s)	222, 372, 389, 571
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	564
Alw44I	GTGCAC	1 cut(s)	183
AlwI	GGATC	2 cut(s)	266, 386
ApaLI	GTGCAC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	584
ApoI	RAATTY	1 cut(s)	199
ArsI	GACNNNNNNTTYG	2 cut(s)	67, 99
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	244
AsuII	TTCGAA	1 cut(s)	115
BaeGI	GKGCMC	1 cut(s)	187
Bbv12I	GWGCWC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	571
BceAI	ACGGC	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	564
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	585
BlsI	GCNGC	1 cut(s)	586
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	693
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	136, 392
BpmI	CTGGAG	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 688
Bse118I	RCCGGY	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	166, 688
BseMII	CTCAG	5 cut(s)	154, 308, 354, 461, 575
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	672
Bsh1285I	CGRYCG	1 cut(s)	649
BsiEI	CGRYCG	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	103, 309
BslI	CCNNNNNNNGG	2 cut(s)	166, 688
BsmAI	GTCTC	1 cut(s)	564
Bsp119I	TTCGAA	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	2 cut(s)	271, 391
BspACI	CCGC	1 cut(s)	323
BspCNI	CTCAG	5 cut(s)	153, 307, 353, 460, 574
BspLI	GGNNCC	1 cut(s)	693
BspPI	GGATC	2 cut(s)	266, 386
BspT104I	TTCGAA	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	271, 391
Bst4CI	ACNGT	6 cut(s)	92, 413, 437, 554, 624, 650
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	115
BstC8I	GCNNGC	3 cut(s)	26, 224, 310
BstDEI	CTNAG	6 cut(s)	140, 294, 340, 373, 447, 561
BstF5I	GGATG	1 cut(s)	531
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	274, 394
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	2 cut(s)	271, 391
BstMCI	CGRYCG	1 cut(s)	649
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 460
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	485
BstSLI	GKGCMC	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	571
BtsCI	GGATG	1 cut(s)	531
BtsIMutI	CAGTG	3 cut(s)	88, 148, 550
Cac8I	GCNNGC	3 cut(s)	26, 224, 310
CfoI	GCGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	2 cut(s)	25, 540
CviJI	RGCY	7 cut(s)	44, 222, 372, 389, 402, 499, 571
CviKI_1	RGCY	7 cut(s)	44, 222, 372, 389, 402, 499, 571
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	6 cut(s)	140, 294, 340, 373, 447, 561
DpnI	GATC	2 cut(s)	273, 393
DpnII	GATC	2 cut(s)	271, 391
Eco57I	CTGAAG	1 cut(s)	147
FaeI	CATG	2 cut(s)	28, 543
FatI	CATG	2 cut(s)	24, 539
FauI	CCCGC	1 cut(s)	330
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	585
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	87
HapII	CCGG	2 cut(s)	103, 309
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	28, 543
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	220
HinfI	GANTC	5 cut(s)	164, 350, 468, 475, 536
HpaII	CCGG	2 cut(s)	103, 309
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	172, 185
Hpy188I	TCNGA	3 cut(s)	75, 297, 632
Hpy188III	TCNNGA	2 cut(s)	196, 472
Hpy8I	GTNNAC	2 cut(s)	172, 185
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	6 cut(s)	92, 413, 437, 554, 624, 650
HpyCH4IV	ACGT	2 cut(s)	426, 575
HpyCH4V	TGCA	8 cut(s)	88, 185, 226, 417, 454, 463, 548, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 460
HpyF3I	CTNAG	6 cut(s)	140, 294, 340, 373, 447, 561
HpySE526I	ACGT	2 cut(s)	426, 575
Hsp92II	CATG	2 cut(s)	28, 543
HspAI	GCGC	1 cut(s)	28
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	271, 391
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	2 cut(s)	136, 392
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	426, 575
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	2 cut(s)	273, 393
MboI	GATC	2 cut(s)	271, 391
MboII	GAAGA	2 cut(s)	129, 280
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	5 cut(s)	8, 199, 365, 419, 589
MlyI	GAGTC	2 cut(s)	158, 484
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	4 cut(s)	62, 149, 278, 303
MroNI	GCCGGC	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	4 cut(s)	315, 336, 422, 660
MspA1I	CMGCKG	2 cut(s)	325, 389
MspI	CCGG	2 cut(s)	103, 309
MspR9I	CCNGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	41, 460
NaeI	GCCGGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	104
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	2 cut(s)	271, 391
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	2 cut(s)	28, 543
NlaIV	GGNNCC	1 cut(s)	693
NspI	RCATGY	1 cut(s)	28
NspV	TTCGAA	1 cut(s)	115
PaeI	GCATGC	1 cut(s)	28
PdiI	GCCGGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	3 cut(s)	350, 468, 536
PflMI	CCANNNNNTGG	1 cut(s)	688
PkrI	GCNGC	1 cut(s)	586
PleI	GAGTC	2 cut(s)	158, 483
PpsI	GAGTC	2 cut(s)	158, 483
Psp1406I	AACGTT	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	693
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	4 cut(s)	315, 336, 422, 660
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	2 cut(s)	271, 391
SchI	GAGTC	2 cut(s)	158, 484
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	8 cut(s)	73, 224, 374, 391, 429, 573, 578, 666
SfaNI	GCATC	2 cut(s)	136, 392
SfcI	CTRYAG	1 cut(s)	485
SfuI	TTCGAA	1 cut(s)	115
SpeI	ACTAGT	1 cut(s)	260
SphI	GCATGC	1 cut(s)	28
Sse9I	AATT	5 cut(s)	8, 199, 365, 419, 589
SsiI	CCGC	1 cut(s)	323
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	6 cut(s)	92, 413, 437, 554, 624, 650
TaiI	ACGT	2 cut(s)	429, 578
TaqI	TCGA	3 cut(s)	115, 270, 645
TasI	AATT	5 cut(s)	8, 199, 365, 419, 589
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	3 cut(s)	350, 468, 536
Tru1I	TTAA	4 cut(s)	315, 336, 422, 660
Tru9I	TTAA	4 cut(s)	315, 336, 422, 660
TscAI	CASTG	3 cut(s)	95, 148, 557
TseI	GCWGC	1 cut(s)	584
TspDTI	ATGAA	1 cut(s)	528
TspGWI	ACGGA	1 cut(s)	616
TspRI	CASTG	3 cut(s)	95, 148, 557
Van91I	CCANNNNNTGG	1 cut(s)	688
VneI	GTGCAC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.