Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Reverse (-)

285654 .. 292137

Gene Structure 6484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1002800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3519 bp

ATGGAAGAGGTCAAACATAAATCTAGGAAGGAGGGGGAATCCAAGAGGAGTCATCGAGATCGGGATCGTGAAAAGGAGAGAAATGGAGAGAGGCATAGGGATAAAGATAAAGATAAGAGAGACCGTGATAGTCGGCGCTATGAGAGAGAAAAGAGTTCTGATTCTGACGAGAGGTATGATAGGGAGAAGCATGGAGACAGGGATAGTGATAGGAAGCGCAACCGAGATGATGATAGAGAGAGAACGAGAGACAAAAAGAGGGATAAAGATAAAGAGAGGGACAAAGACAAAGAAAAGGAGAAGAGAGATAGGACTAGAGAGAAGGAAAAGGAAAGGGAAAAAGAAAGGCAAAGAGAAAAAGAAAGAGAAAGGGAAAAAGAAAGACAAAGAGAAAAGGAGAAAGAAAAAGAAAAAGAACGTGAAAGAGAAAGAGAAAGAGAAAGAGAAAAAGAAAAAGAACGAGAAAGAGAGAGGGAGAGAAGGGAACGAGAAAGAGAGATAGAAGATAAGAGGGAGAGAGAGAGGGAGAGGGAAAAAGATAGAGATCGGGAGAGGAGGGTGCGGGAGAGGGAGAGGCGCAGGGACATTGATGCTGATGATACTGATGATGATGGTAGGGAGCGTGATAGGAAGCGACCTAGGAAAGATAACAATGACTACAAGGAGAGGGAGAGGGAAAGGAGTAGCAGCAGGTCAAAAAGACATAGGGATGATGGAGATGGGAGCCCCAGAAAGAAGTCTGATGAAGGTGATTCATCTGAGGAAGAACAACCAACCCGTGAGGAGGAGCTGGAGGATGAACAACGGAAATTGGATGAGGAAATGGAAAAGCGGAGAAGGAGAGTTCAGGAGTGGCAAGAGTTAAAAAGAAAGAAGGAAGAAACCGAGAGAGAGAAGAATGGGGAAGGGGATGCTGATGAACCTAAGTCAGGAAAGGCCTGGACTCTTGAAGAAGAATCTGATGATGAAGAAGTACCTTCCTTAGAGAAATCAGAGACAGGTATAGATGTTGATGACGAAGACAATCATACTGACAGAAAAGTTGGAGATGCTATGGCGGTAGTTTCTGAAGATGAAACAGCCGCACCCACTTTGCACAATGGGGCCGATGATGCTGCTGATGATGAGGAAGTTGATCCTTTAGATGCTTTTATGAATTCTATGGTATTGCCTGAAGTTGAGAAGCTGACCAATGCAGTGGAACCGTCAATTGTTGATGAAAAGAACAAGGATAAGAAGGATGGTCGAAACAACGGTGAACAACCAAGGAGAGGTTCAAATAAATCGATGGGCAGAATAATTCCTGGGGAGGATTCTGACTCAGATTATGGGGACTTGGAGAATGATGATGATCCCGTAGAAGATGAAGGTGATGATGAGTTCATAAAAAGGGTGAAAAAGACAAAAGCTGAGAAGCTCGCTGTAGTTGATCACTCAAAGATAGATTATGATCCATTTCGTAAAAATTTCTATATTGAAGTGAAGGAGATCTCAAGAATGACCCCAGAAGAGGTGGGGGTGTATCGGAAACAATTGGAATTGAAGATCCATGGTAAAGATGTGCCCAAGCCCATCAAGACCTGGCACCAAACTGGACTTACAAGTAAAATCTTGGAAACAATAAAAAAGCTTAACTATGAAAAGCCAATGCCAATTCAGGCTCAGGCAGTGCCTATAATTATGAGTGGTCGAGACTGCATTGGCATTGCGAAGACTGGGTCAGGCAAAACCCTTGCATTTGTGCTGCCAATGCTGAGGCATATCAAGGACCAGCCACCTGTGGTAGCTGGAGATGGGCCTATTGGGCTTATAATGGCACCAACGAGGGAGCTTGTTCAGCAAATTCACGGTGATATTAAAAAGTTTACAAAGGTACTTGGTCTCAGGTGTGTGCCTGTATACGGAGGTTCTGGTGTTGCCCAACAGATTAGTGAATTGAAGCGGGGGGCCGAAATTGTCGTCTGTACCCCTGGTAGGATGATTGACATACTGTGCACAAGTGGGGGGAAAATAACAAATCTGCGTAGAGTTACTTATTTGGTTGTGGATGAAGCTGATCGAATGTTTGACATGGGCTTTGAACCGCAAATCACCCGAATTGTACAAAATATCCGGCCTGATCGTCAAACTGTTTTGTTTTCTGCCACCTTCCCTCGCCAGGTTGAAGTCTTGGCACGCAAAGTCTTAAACAGACCTGTGGAAATACAAGTTGGTGGAAGGAGTGTTGTGAATAAGGACATAACACAATTAGTTGAAGTGAGGATGGAAAATGAAAGGTTCTTGAGATTGTTAGAGCTGCTTGGGGAATGGTATGAGAAAGGAAAAATTTTGATATTTGTTGAGTCACAGAACAAATGCGATGCTTTGTTCAGGGATCTGCTTAGGCATGGGTATCCTTGTCTCTCACTTCATGGGGGCAAAGATCAGACAGATCGTGAGTCCACCATAACTGACTTTAAGAGCAATGTTTGTAATTTGTTGGTTGCAACAAGCGTTGCTGCCAGAGGGTTAGATGTGAAGGAGCTTGAACTGGTAATCAATTATGACAGTCCAAATCACTATGAAGACTATGTTCACCGTGTTGGCCGAACAGGGCGAGCTGGCCGGAAAGGTTGTGCTATAACTTTTATCTCTGGGGAAGATGCTAGATATGCTCCGGATCTTGTCAAAGCATTGGAACTCTCTGAGCAAGTTGTTCCAGATGACCTGAAGTCTCTCGCTGATAATTTCACGGCAAAAGTAAATCAGGGACTTGAGCAAGCTCATGGGACTGGTTATGGGGGAAGTGGTTTCAAATTTAATGAAGAGGAAGATGAAGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAGGAATATGGTTTTGAGGAGGACAAGTCAGATTCAGAAGATGAAGATGATGGTATTCGAAAGGCAGGGGGTGACATCTCACAGCAGGCTGCCCTTGCTCAGATAGCTGCCATTGCTGCTGCCTCCAAAGCTAGTACGGCTTCAATGCAGACCCCTGCCTCTGCTGCCCAACTACTTCCAAGCAGTGGACTGCCTGTTTCTCTTCCAGGTGTCCTTGGTCTAGCGTTGCCAGGAACAGCAGCAGTTGCTGCTGGGACTAGTCTGCCTCTCGTGGGCAATGATGGGGCTGCTCGGGCAGCAGCTATTGCAGCTGCAATGAACTTACAGCATAACTTGGCAAAGATTCAAGCTGATGCAATGCCTGAACACTATGAAGCAGAATTGGAGATAAATGATTTTCCCCAGAATGCTCGATGGAAGGTTACCCACAAGGAAACTTTGGGCCCTATATCAGAGTGGACTGGGGCTGCCATTACTACCAGGGGTCAGTATTTCCCACCAGGCAAGGTTACAGGACCAGGGGATCGCAAGCTCTACCTGTTTATCGAGGGCCCTACTGAACAATCTGTCAAGAGAGCTAAGACAGAATTAAAACGTGTTTTGGAAGACATCTCAAATCAGGCATTATCGCTTCCTGGTGGAGCTCAGCAAGGCAGATATCAAGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

1173

Amino Acids

134.17

Weight (kDa)

5.65

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	551 - 722	1.6e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	762 - 868	1.2e-29	Helicase conserved C-terminal domain
KH_12	PF23469	1074 - 1151	2.6e-14	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1811, 3517
Acc36I	ACCTGC	1 cut(s)	681
AccB1I	GGYRCC	2 cut(s)	1584, 1816
AccB7I	CCANNNNNTGG	1 cut(s)	3032
AccI	GTMKAC	1 cut(s)	1899
AccIII	TCCGGA	1 cut(s)	2656
AciI	CCGC	6 cut(s)	562, 832, 1058, 1083, 1942, 2084
AclWI	GGATC	8 cut(s)	72, 1130, 1346, 1445, 1540, 2382, 2667, 3378
AcoI	YGGCCR	2 cut(s)	2584, 2602
AcsI	RAATTY	5 cut(s)	1156, 1465, 1842, 2325, 2795
AcuI	CTGAAG	3 cut(s)	1089, 1194, 2729
AfaI	GTAC	5 cut(s)	975, 1875, 1966, 2103, 2983
AfiI	CCNNNNNNNGG	9 cut(s)	784, 929, 1271, 1510, 1901, 1974, 2158, 3032, 3119
AflIII	ACRYGT	1 cut(s)	3442
AhdI	GACNNNNNGTC	1 cut(s)	2710
AhlI	ACTAGT	1 cut(s)	3104
AjuI	GAANNNNNNNTTGG	4 cut(s)	1258, 1290, 2193, 2225
Alw21I	GWGCWC	2 cut(s)	1997, 3493
Alw26I	GTCTC	8 cut(s)	114, 189, 243, 989, 1686, 1886, 2405, 2718
Alw44I	GTGCAC	1 cut(s)	1993
AlwI	GGATC	8 cut(s)	72, 1130, 1346, 1445, 1540, 2382, 2667, 3378
AlwNI	CAGNNNCTG	1 cut(s)	3095
Ama87I	CYCGRG	1 cut(s)	3138
Aor13HI	TCCGGA	1 cut(s)	2656
AoxI	GGCC	9 cut(s)	936, 1104, 1796, 1947, 2114, 2584, 2602, 3289, 3397
ApaI	GGGCCC	2 cut(s)	3293, 3401
ApaLI	GTGCAC	1 cut(s)	1993
ApoI	RAATTY	5 cut(s)	1156, 1465, 1842, 2325, 2795
ArsI	GACNNNNNNTTYG	6 cut(s)	1703, 1735, 1944, 1976, 2060, 2092
AspA2I	CCTAGG	1 cut(s)	638
AspLEI	GCGC	3 cut(s)	138, 219, 579
AspS9I	GGNCC	9 cut(s)	1104, 1768, 1796, 1947, 3289, 3290, 3362, 3397, 3398
AsuHPI	GGTGA	8 cut(s)	761, 1268, 1382, 1405, 1862, 2083, 2567, 2930
AsuII	TTCGAA	1 cut(s)	2905
AvaI	CYCGRG	1 cut(s)	3138
AvaII	GGWCC	2 cut(s)	1768, 3362
AvrII	CCTAGG	1 cut(s)	638
BaeGI	GKGCMC	4 cut(s)	1566, 1997, 3293, 3401
BanI	GGYRCC	2 cut(s)	1584, 1816
BanII	GRGCYC	4 cut(s)	728, 3293, 3401, 3493
BauI	CACGAG	1 cut(s)	3116
BbsI	GAAGAC	4 cut(s)	1026, 1718, 2571, 3459
Bbv12I	GWGCWC	2 cut(s)	1997, 3493
BbvCI	CCTCAGC	1 cut(s)	1754
BceAI	ACGGC	2 cut(s)	2748, 3000
BcgI	CGANNNNNNTGC	2 cut(s)	1097, 1131
BciVI	GTATCC	1 cut(s)	2403
BclI	TGATCA	1 cut(s)	1429
BcoDI	GTCTC	8 cut(s)	114, 189, 243, 989, 1686, 1886, 2405, 2718
BcuI	ACTAGT	1 cut(s)	3104
BfaI	CTAG	7 cut(s)	24, 315, 639, 2646, 2979, 3068, 3105
BfmI	CTRYAG	1 cut(s)	1422
BfoI	RGCGCY	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	681
BfuI	GTATCC	1 cut(s)	2403
BglI	GCCNNNNNGGC	1 cut(s)	1804
BglII	AGATCT	1 cut(s)	1488
BlnI	CCTAGG	1 cut(s)	638
BlpI	GCTNAGC	1 cut(s)	3492
Bme18I	GGWCC	2 cut(s)	1768, 3362
BmeRI	GACNNNNNGTC	1 cut(s)	2710
BmeT110I	CYCGRG	1 cut(s)	3138
BmgT120I	GGNCC	9 cut(s)	1104, 1768, 1796, 1947, 3289, 3290, 3362, 3397, 3398
BmiI	GGNNCC	8 cut(s)	725, 1105, 1203, 1586, 1818, 1948, 3291, 3399
BmrI	ACTGGG	2 cut(s)	1725, 3318
BmsI	GCATC	8 cut(s)	580, 901, 1039, 1102, 1135, 2350, 2632, 3190
BmuI	ACTGGG	2 cut(s)	1725, 3318
BpiI	GAAGAC	4 cut(s)	1026, 1718, 2571, 3459
BpmI	CTGGAG	2 cut(s)	812, 1809
Bpu10I	CCTNAGC	3 cut(s)	1662, 1754, 2381
Bpu1102I	GCTNAGC	1 cut(s)	3492
Bpu14I	TTCGAA	1 cut(s)	2905
BpuEI	CTTGAG	3 cut(s)	1477, 2302, 2774
Bsa29I	ATCGAT	1 cut(s)	1286
BsaBI	GATNNNNATC	4 cut(s)	63, 543, 1350, 1449
BsaI	GGTCTC	2 cut(s)	114, 1886
BsaJI	CCNNGG	9 cut(s)	638, 1265, 1304, 1549, 1969, 2847, 3061, 3327, 3365
BsaWI	WCCGGW	1 cut(s)	2656
BsaXI	ACNNNNNCTCC	2 cut(s)	2858, 2888
Bsc4I	CCNNNNNNNGG	9 cut(s)	784, 929, 1271, 1510, 1901, 1974, 2158, 3032, 3119
Bse1I	ACTGG	5 cut(s)	1597, 1720, 2535, 2776, 3313
Bse3DI	GCAATG	6 cut(s)	1704, 2470, 2958, 3130, 3168, 3210
Bse8I	GATNNNNATC	4 cut(s)	63, 543, 1350, 1449
BseAI	TCCGGA	1 cut(s)	2656
BseCI	ATCGAT	1 cut(s)	1286
BseDI	CCNNGG	9 cut(s)	638, 1265, 1304, 1549, 1969, 2847, 3061, 3327, 3365
BseGI	GGATG	8 cut(s)	715, 802, 820, 916, 1246, 1983, 2053, 2268
BseJI	GATNNNNATC	4 cut(s)	63, 543, 1350, 1449
BseLI	CCNNNNNNNGG	9 cut(s)	784, 929, 1271, 1510, 1901, 1974, 2158, 3032, 3119
BseMI	GCAATG	6 cut(s)	1704, 2470, 2958, 3130, 3168, 3210
BseMII	CTCAG	9 cut(s)	750, 1335, 1401, 1676, 1745, 1897, 2676, 2960, 3506
BseNI	ACTGG	5 cut(s)	1597, 1720, 2535, 2776, 3313
BseRI	GAGGAG	6 cut(s)	61, 568, 797, 800, 2836, 2879
BseSI	GKGCMC	4 cut(s)	1566, 1997, 3293, 3401
BseYI	CCCAGC	1 cut(s)	3098
BshFI	GGCC	9 cut(s)	938, 1106, 1798, 1949, 2116, 2586, 2604, 3291, 3399
BshNI	GGYRCC	2 cut(s)	1584, 1816
BshVI	ATCGAT	1 cut(s)	1286
BsiHKAI	GWGCWC	2 cut(s)	1997, 3493
BsiHKCI	CYCGRG	1 cut(s)	3138
BsiSI	CCGG	3 cut(s)	2113, 2605, 2657
BslFI	GGGAC	6 cut(s)	293, 596, 1346, 2763, 2782, 3115
BslI	CCNNNNNNNGG	9 cut(s)	784, 929, 1271, 1510, 1901, 1974, 2158, 3032, 3119
BsmAI	GTCTC	8 cut(s)	114, 189, 243, 989, 1686, 1886, 2405, 2718
BsmFI	GGGAC	6 cut(s)	293, 596, 1346, 2763, 2782, 3115
BsmI	GAATGC	1 cut(s)	3259
BsnI	GGCC	9 cut(s)	938, 1106, 1798, 1949, 2116, 2586, 2604, 3291, 3399
Bso31I	GGTCTC	2 cut(s)	114, 1886
BsoBI	CYCGRG	1 cut(s)	3138
Bsp119I	TTCGAA	1 cut(s)	2905
Bsp120I	GGGCCC	2 cut(s)	3289, 3397
Bsp1286I	GDGCHC	6 cut(s)	728, 1566, 1997, 3293, 3401, 3493
Bsp13I	TCCGGA	1 cut(s)	2656
Bsp1407I	TGTACA	1 cut(s)	2101
Bsp1720I	GCTNAGC	1 cut(s)	3492
Bsp19I	CCATGG	1 cut(s)	1549
BspACI	CCGC	6 cut(s)	562, 832, 1058, 1083, 1942, 2084
BspANI	GGCC	9 cut(s)	938, 1106, 1798, 1949, 2116, 2586, 2604, 3291, 3399
BspCNI	CTCAG	9 cut(s)	751, 1334, 1402, 1675, 1746, 1896, 2677, 2959, 3505
BspDI	ATCGAT	1 cut(s)	1286
BspEI	TCCGGA	1 cut(s)	2656
BspLI	GGNNCC	8 cut(s)	725, 1105, 1203, 1586, 1818, 1948, 3291, 3399
BspMI	ACCTGC	1 cut(s)	681
BspPI	GGATC	8 cut(s)	72, 1130, 1346, 1445, 1540, 2382, 2667, 3378
BspT104I	TTCGAA	1 cut(s)	2905
BspT107I	GGYRCC	2 cut(s)	1584, 1816
BspTNI	GGTCTC	2 cut(s)	114, 1886
BsrDI	GCAATG	6 cut(s)	1704, 2470, 2958, 3130, 3168, 3210
BsrGI	TGTACA	1 cut(s)	2101
BsrI	ACTGG	5 cut(s)	1597, 1720, 2535, 2776, 3313
BssECI	CCNNGG	9 cut(s)	638, 1265, 1304, 1549, 1969, 2847, 3061, 3327, 3365
BssNAI	GTATAC	1 cut(s)	1900
BssSI	CACGAG	1 cut(s)	3116
BssT1I	CCWWGG	5 cut(s)	638, 1265, 1549, 2847, 3061
Bst1107I	GTATAC	1 cut(s)	1900
Bst2BI	CACGAG	1 cut(s)	3116
Bst4CI	ACNGT	8 cut(s)	125, 1206, 1256, 1850, 1992, 2131, 2549, 2579
Bst6I	CTCTTC	4 cut(s)	296, 1503, 2799, 3054
BstAPI	GCANNNNNTGC	3 cut(s)	3092, 3095, 3152
BstAUI	TGTACA	1 cut(s)	2101
BstBI	TTCGAA	1 cut(s)	2905
BstC8I	GCNNGC	7 cut(s)	1419, 2176, 2598, 2602, 2760, 2934, 3377
BstDSI	CCRYGG	1 cut(s)	1549
BstEII	GGTNACC	1 cut(s)	3268
BstENI	CCTNNNNNAGG	1 cut(s)	927
BstF5I	GGATG	8 cut(s)	715, 802, 820, 916, 1246, 1983, 2053, 2268
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	3 cut(s)	138, 219, 579
BstMAI	GTCTC	8 cut(s)	114, 189, 243, 989, 1686, 1886, 2405, 2718
BstPI	GGTNACC	1 cut(s)	3268
BstSFI	CTRYAG	1 cut(s)	1422
BstSLI	GKGCMC	4 cut(s)	1566, 1997, 3293, 3401
BstV2I	GAAGAC	4 cut(s)	1026, 1718, 2571, 3459
BstX2I	RGATCY	4 cut(s)	1488, 1545, 2374, 2659
BstXI	CCANNNNNNTGG	1 cut(s)	1198
BstYI	RGATCY	4 cut(s)	1488, 1545, 2374, 2659
BstZ17I	GTATAC	1 cut(s)	1900
Bsu15I	ATCGAT	1 cut(s)	1286
BsuI	GTATCC	1 cut(s)	2403
BsuRI	GGCC	9 cut(s)	938, 1106, 1798, 1949, 2116, 2586, 2604, 3291, 3399
BsuTUI	ATCGAT	1 cut(s)	1286
BtgI	CCRYGG	1 cut(s)	1549
BtgZI	GCGATG	1 cut(s)	2373
BtsCI	GGATG	8 cut(s)	715, 802, 820, 916, 1246, 1983, 2053, 2268
BtsI	GCAGTG	3 cut(s)	1203, 1674, 3037
BtsIMutI	CAGTG	3 cut(s)	1203, 1674, 3037
BveI	ACCTGC	1 cut(s)	681
Cac8I	GCNNGC	7 cut(s)	1419, 2176, 2598, 2602, 2760, 2934, 3377
CaiI	CAGNNNCTG	1 cut(s)	3095
CfoI	GCGC	3 cut(s)	138, 219, 579
Cfr13I	GGNCC	9 cut(s)	1104, 1768, 1796, 1947, 3289, 3290, 3362, 3397, 3398
ClaI	ATCGAT	1 cut(s)	1286
Csp6I	GTAC	5 cut(s)	974, 1874, 1965, 2102, 2982
CviAII	CATG	6 cut(s)	191, 1550, 2071, 2387, 2411, 2765
CviQI	GTAC	5 cut(s)	974, 1874, 1965, 2102, 2982
DriI	GACNNNNNGTC	1 cut(s)	2710
EaeI	YGGCCR	2 cut(s)	2584, 2602
Eam1104I	CTCTTC	4 cut(s)	296, 1503, 2799, 3054
Eam1105I	GACNNNNNGTC	1 cut(s)	2710
EarI	CTCTTC	4 cut(s)	296, 1503, 2799, 3054
Ecl136II	GAGCTC	1 cut(s)	3491
Eco130I	CCWWGG	5 cut(s)	638, 1265, 1549, 2847, 3061
Eco147I	AGGCCT	1 cut(s)	938
Eco24I	GRGCYC	4 cut(s)	728, 3293, 3401, 3493
Eco31I	GGTCTC	2 cut(s)	114, 1886
Eco32I	GATATC	1 cut(s)	3506
Eco47I	GGWCC	2 cut(s)	1768, 3362
Eco53kI	GAGCTC	1 cut(s)	3491
Eco57I	CTGAAG	3 cut(s)	1089, 1194, 2729
Eco88I	CYCGRG	1 cut(s)	3138
Eco91I	GGTNACC	1 cut(s)	3268
EcoICRI	GAGCTC	1 cut(s)	3491
EcoNI	CCTNNNNNAGG	1 cut(s)	927
EcoO109I	RGGNCCY	3 cut(s)	3290, 3397, 3398
EcoO65I	GGTNACC	1 cut(s)	3268
EcoRI	GAATTC	1 cut(s)	1156
EcoRV	GATATC	1 cut(s)	3506
EcoT14I	CCWWGG	5 cut(s)	638, 1265, 1549, 2847, 3061
EcoT38I	GRGCYC	4 cut(s)	728, 3293, 3401, 3493
ErhI	CCWWGG	5 cut(s)	638, 1265, 1549, 2847, 3061
FaeI	CATG	6 cut(s)	194, 1553, 2074, 2390, 2414, 2768
FaqI	GGGAC	6 cut(s)	293, 596, 1346, 2763, 2782, 3115
FatI	CATG	6 cut(s)	190, 1549, 2070, 2386, 2410, 2764
FauI	CCCGC	2 cut(s)	555, 1935
FbaI	TGATCA	1 cut(s)	1429
FblI	GTMKAC	1 cut(s)	1899
FokI	GGATG	8 cut(s)	722, 809, 827, 923, 1253, 1990, 2060, 2275
FriOI	GRGCYC	4 cut(s)	728, 3293, 3401, 3493
FspBI	CTAG	7 cut(s)	24, 315, 639, 2646, 2979, 3068, 3105
GlaI	GCGC	3 cut(s)	137, 218, 578
GsaI	CCCAGC	1 cut(s)	3102
GsuI	CTGGAG	2 cut(s)	812, 1809
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	9 cut(s)	938, 1106, 1798, 1949, 2116, 2586, 2604, 3291, 3399
HapII	CCGG	3 cut(s)	2113, 2605, 2657
HhaI	GCGC	3 cut(s)	138, 219, 579
Hin1II	CATG	6 cut(s)	194, 1553, 2074, 2390, 2414, 2768
Hin6I	GCGC	3 cut(s)	136, 217, 577
HinP1I	GCGC	3 cut(s)	136, 217, 577
HindIII	AAGCTT	1 cut(s)	1628
HpaII	CCGG	3 cut(s)	2113, 2605, 2657
HphI	GGTGA	8 cut(s)	761, 1268, 1382, 1405, 1862, 2083, 2567, 2930
Hpy166II	GTNNAC	8 cut(s)	1259, 1866, 1900, 1995, 2442, 2575, 3035, 3306
Hpy8I	GTNNAC	8 cut(s)	1259, 1866, 1900, 1995, 2442, 2575, 3035, 3306
HpyCH4III	ACNGT	8 cut(s)	125, 1206, 1256, 1850, 1992, 2131, 2549, 2579
HpyCH4IV	ACGT	2 cut(s)	418, 3442
HpySE526I	ACGT	2 cut(s)	418, 3442
Hsp92II	CATG	6 cut(s)	194, 1553, 2074, 2390, 2414, 2768
HspAI	GCGC	3 cut(s)	136, 217, 577
Kpn2I	TCCGGA	1 cut(s)	2656
Ksp22I	TGATCA	1 cut(s)	1429
LmnI	GCTCC	7 cut(s)	619, 723, 787, 1828, 2521, 2659, 3488
LweI	GCATC	8 cut(s)	580, 901, 1039, 1102, 1135, 2350, 2632, 3190
MaeI	CTAG	7 cut(s)	24, 315, 639, 2646, 2979, 3068, 3105
MaeII	ACGT	2 cut(s)	418, 3442
MaeIII	GTNAC	5 cut(s)	2029, 2343, 2918, 3268, 3355
MfeI	CAATTG	2 cut(s)	1209, 1532
MflI	RGATCY	4 cut(s)	1488, 1545, 2374, 2659
MhlI	GDGCHC	6 cut(s)	728, 1566, 1997, 3293, 3401, 3493
MlyI	GAGTC	5 cut(s)	58, 937, 1313, 2351, 2447
MmeI	TCCRAC	1 cut(s)	1024
MroI	TCCGGA	1 cut(s)	2656
MseI	TTAA	7 cut(s)	863, 1632, 1857, 2186, 2457, 2799, 3437
MslI	CAYNNNNRTG	1 cut(s)	708
MspA1I	CMGCKG	1 cut(s)	3158
MspI	CCGG	3 cut(s)	2113, 2605, 2657
MunI	CAATTG	2 cut(s)	1209, 1532
Mva1269I	GAATGC	1 cut(s)	3259
NcoI	CCATGG	1 cut(s)	1549
NlaIII	CATG	6 cut(s)	194, 1553, 2074, 2390, 2414, 2768
NlaIV	GGNNCC	8 cut(s)	725, 1105, 1203, 1586, 1818, 1948, 3291, 3399
NmuCI	GTSAC	2 cut(s)	2343, 2918
NspV	TTCGAA	1 cut(s)	2905
PceI	AGGCCT	1 cut(s)	938
PctI	GAATGC	1 cut(s)	3259
PfeI	GAWTC	7 cut(s)	38, 161, 752, 956, 1313, 2879, 3190
PflFI	GACNNNGTC	1 cut(s)	1717
PflMI	CCANNNNNTGG	1 cut(s)	3032
PleI	GAGTC	5 cut(s)	57, 937, 1313, 2350, 2446
PpsI	GAGTC	5 cut(s)	57, 937, 1313, 2350, 2446
PsiI	TTATAA	2 cut(s)	1811, 3517
Psp124BI	GAGCTC	1 cut(s)	3493
PspEI	GGTNACC	1 cut(s)	3268
PspFI	CCCAGC	1 cut(s)	3098
PspN4I	GGNNCC	8 cut(s)	725, 1105, 1203, 1586, 1818, 1948, 3291, 3399
PspOMI	GGGCCC	2 cut(s)	3289, 3397
PspPI	GGNCC	9 cut(s)	1104, 1768, 1796, 1947, 3289, 3290, 3362, 3397, 3398
PstNI	CAGNNNCTG	1 cut(s)	3095
PsuI	RGATCY	4 cut(s)	1488, 1545, 2374, 2659
PsyI	GACNNNGTC	1 cut(s)	1717
PvuII	CAGCTG	1 cut(s)	3158
RsaI	GTAC	5 cut(s)	975, 1875, 1966, 2103, 2983
RsaNI	GTAC	5 cut(s)	974, 1874, 1965, 2102, 2982
RseI	CAYNNNNRTG	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	3493
SaqAI	TTAA	7 cut(s)	863, 1632, 1857, 2186, 2457, 2799, 3437
Sau96I	GGNCC	9 cut(s)	1104, 1768, 1796, 1947, 3289, 3290, 3362, 3397, 3398
SchI	GAGTC	5 cut(s)	58, 937, 1313, 2351, 2447
SduI	GDGCHC	6 cut(s)	728, 1566, 1997, 3293, 3401, 3493
SfaNI	GCATC	8 cut(s)	580, 901, 1039, 1102, 1135, 2350, 2632, 3190
SfcI	CTRYAG	1 cut(s)	1422
SfuI	TTCGAA	1 cut(s)	2905
SinI	GGWCC	2 cut(s)	1768, 3362
SmiMI	CAYNNNNRTG	1 cut(s)	708
SmlI	CTYRAG	3 cut(s)	1492, 2281, 2753
SmoI	CTYRAG	3 cut(s)	1492, 2281, 2753
SpeI	ACTAGT	1 cut(s)	3104
SseBI	AGGCCT	1 cut(s)	938
SsiI	CCGC	6 cut(s)	562, 832, 1058, 1083, 1942, 2084
SspMI	CTAG	7 cut(s)	24, 315, 639, 2646, 2979, 3068, 3105
SstI	GAGCTC	1 cut(s)	3493
StuI	AGGCCT	1 cut(s)	938
StyI	CCWWGG	5 cut(s)	638, 1265, 1549, 2847, 3061
TaaI	ACNGT	8 cut(s)	125, 1206, 1256, 1850, 1992, 2131, 2549, 2579
TaiI	ACGT	2 cut(s)	421, 3445
TaqI	TCGA	8 cut(s)	55, 1246, 1286, 1690, 2059, 2905, 3259, 3393
TatI	WGTACW	1 cut(s)	2101
TauI	GCSGC	1 cut(s)	1085
TfiI	GAWTC	7 cut(s)	38, 161, 752, 956, 1313, 2879, 3190
Tru1I	TTAA	7 cut(s)	863, 1632, 1857, 2186, 2457, 2799, 3437
Tru9I	TTAA	7 cut(s)	863, 1632, 1857, 2186, 2457, 2799, 3437
TscAI	CASTG	3 cut(s)	1203, 1674, 3037
TseFI	GTSAC	2 cut(s)	2343, 2918
Tsp45I	GTSAC	2 cut(s)	2343, 2918
TspGWI	ACGGA	2 cut(s)	820, 1917
TspRI	CASTG	3 cut(s)	1203, 1674, 3037
Tth111I	GACNNNGTC	1 cut(s)	1717
Van91I	CCANNNNNTGG	1 cut(s)	3032
VneI	GTGCAC	1 cut(s)	1993
VpaK11BI	GGWCC	2 cut(s)	1768, 3362
XagI	CCTNNNNNAGG	1 cut(s)	927
XapI	RAATTY	5 cut(s)	1156, 1465, 1842, 2325, 2795
XmaJI	CCTAGG	1 cut(s)	638
XmiI	GTMKAC	1 cut(s)	1899
XspI	CTAG	7 cut(s)	24, 315, 639, 2646, 2979, 3068, 3105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.