Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Forward (+)

13224685 .. 13227999

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0165000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGGCACTCATTTCCCAGACAAGTTCATCATACTACTGCAGAAGCATTGGCTTCTCTTCCTCTGCATTTTATTCTACTACTACTACTAGGAAGATACAGGTTTTGCATGTAGAAAATGTTGCAGGACAGAAACGAGGACGTAAAAGTGCGATAGTTGCTGCAAGTCCTATCACAGAAGAGGCTGTAGTAGCTACAAAGCCGCTGATGAAAGAAGATCTTGTAGGCTATCTTGCCTCTGGATGCAAGCCCAAAGAAAAATGGAGAATTGGCATGGAACACGAGAGGTTTGGCTTCGAACTAAATACTTTACGTCCGCTGCAATATGAACAAATAGCTGAGCTGCTCTATGGGATTGCTGGGAGATTTGAGTGGGAGAAAATCATGGAAGGTGGTAAGATTATTGGACTCAAACAGGGTAAGCAGAGCATATCACTAGAGCCAGGAGGTCAATTTGAGCTTAGTGGTGCACCTCTTGAAACTCTGCAACAAATTTGTATTGAAGTCAATTCACAACTCTGTCAGATCAAAGCAGTTGCAGAGAAAATGGGAATCGGATTTCTTGAAATTGGTGGTCAGCCGAAATGGAGAATTCAAGACATACCTATGATGCCCAAGGGAAGATTTGAGATTATTAGAAATTACATGCCAAAAGTTGGCTCGCTTGGACATGATTTGATGTTAAGAACTTGCACTGTACAGGTCAATCTGGACTTCAGTTCTGAAGCAGACATGAAACGGAAATTGCGTGCTAGTCTTGCTTTGCAGCCTATAGCAACAGCCCTATTTGCAAATTCACCTTTCACTGAAGGAAAACCGAATGGTTTTCTAAGCAGGAGAAGTCACATCTACACTGATACTGACAAGGATCGCACTGGCATGCTTCCTTTTGCTTTTGATGACTCCTTTGGGTTTGAGCGGTATGTTGATTATGCTCTTGATGTTCCCATGTACTGTGTTTATCGGAAAAATAAGTGTATCGACTGTACTGGAATGACCTTTCGGGACTTTATCGCAGGAAAGCTTCGTTGCCTTCCAGGTGAATTACCAACACTGAATGATTGGGAGAATCATTTGGGAACTATTTATCCAGAGGTCAGGCTGAAGAGATACTTGGAGATGAGGGGTGCTGATGGAGGGCCTTGGAGAAGCTTATGCGCTTTGCCTGCATTTTGGGTGGGTCTACTATATGATGAAGTTTCCCTGCAGAATGTGTTAGACATGATTGCTGATTGGACTCCTGAAGAAAGACAGATGCTGAGAGATAAGATTCCAAAAACGGGTCTAAAGACACCATTTCGTGAAGGAATTCTCAAGCATGTTGCCGAAGATGTAATAAAGTTTGCAAAGGATGGCCTGGAAAGAAGAGGCTTTAAGGAATCAGGGTTTTTAAATGAGGTGGTGGAGGTTGTGAGAACTGGTGTAACACCAGCAGAGAAGCTATTGGAATTATATAATGGGAAATGGAAACAACAGATAGACCCAGTTTTTGAAGAGCTACTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

501

Amino Acids

56.74

Weight (kDa)

8.18

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCS2	PF04107	88 - 498	7.8e-97	Glutamate-cysteine ligase family 2(GCS2)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccBSI	CCGCTC	1 cut(s)	916
AccI	GTMKAC	1 cut(s)	1180
AciI	CCGC	3 cut(s)	200, 314, 916
AclWI	GGATC	1 cut(s)	873
AcsI	RAATTY	4 cut(s)	489, 588, 790, 1305
AcuI	CTGAAG	5 cut(s)	697, 741, 825, 1121, 1260
AfaI	GTAC	3 cut(s)	696, 950, 985
AfiI	CCNNNNNNNGG	2 cut(s)	653, 1277
AgsI	TTSAA	5 cut(s)	476, 500, 563, 593, 1490
AjnI	CCWGG	3 cut(s)	439, 1033, 1353
AjuI	GAANNNNNNNTTGG	2 cut(s)	1094, 1126
AloI	GAACNNNNNNTCC	2 cut(s)	1069, 1101
AluBI	AGCT	8 cut(s)	191, 335, 340, 457, 1021, 1149, 1438, 1495
AluI	AGCT	8 cut(s)	191, 335, 340, 457, 1021, 1149, 1438, 1495
Alw21I	GWGCWC	1 cut(s)	469
Alw44I	GTGCAC	1 cut(s)	465
AlwI	GGATC	1 cut(s)	873
AlwNI	CAGNNNCTG	1 cut(s)	1255
AoxI	GGCC	2 cut(s)	1136, 1351
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	4 cut(s)	158, 316, 340, 763
ApoI	RAATTY	4 cut(s)	489, 588, 790, 1305
ArsI	GACNNNNNNTTYG	2 cut(s)	1469, 1501
Asp700I	GAANNNNTTC	1 cut(s)	1305
AspLEI	GCGC	1 cut(s)	1157
AspS9I	GGNCC	1 cut(s)	1136
AsuHPI	GGTGA	2 cut(s)	786, 1049
AsuII	TTCGAA	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	469
BauI	CACGAG	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	4 cut(s)	145, 303, 327, 775
BccI	CCATC	2 cut(s)	1124, 1343
BciT130I	CCWGG	3 cut(s)	441, 1035, 1355
BfaI	CTAG	3 cut(s)	87, 434, 750
BfmI	CTRYAG	4 cut(s)	37, 183, 768, 1202
BglII	AGATCT	1 cut(s)	214
BisI	GCNGC	5 cut(s)	159, 200, 317, 341, 764
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	5 cut(s)	160, 201, 318, 342, 765
Bme1390I	CCNGG	3 cut(s)	441, 1035, 1355
BmgT120I	GGNCC	1 cut(s)	1136
BmrFI	CCNGG	3 cut(s)	441, 1035, 1355
BmrI	ACTGGG	1 cut(s)	1475
BmsI	GCATC	3 cut(s)	230, 597, 1242
BmuI	ACTGGG	1 cut(s)	1475
Bpu1102I	GCTNAGC	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	1295
BsaJI	CCNNGG	2 cut(s)	612, 1139
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 1277
Bse1I	ACTGG	4 cut(s)	877, 991, 1420, 1481
BseBI	CCWGG	3 cut(s)	441, 1035, 1355
BseDI	CCNNGG	2 cut(s)	612, 1139
BseGI	GGATG	2 cut(s)	245, 1354
BseLI	CCNNNNNNNGG	2 cut(s)	653, 1277
BseMII	CTCAG	2 cut(s)	327, 1247
BseNI	ACTGG	4 cut(s)	877, 991, 1420, 1481
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	4 cut(s)	145, 303, 327, 775
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	2 cut(s)	1138, 1353
BsiHKAI	GWGCWC	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	1016
BslI	CCNNNNNNNGG	2 cut(s)	653, 1277
BsmFI	GGGAC	1 cut(s)	1016
BsnI	GGCC	2 cut(s)	1138, 1353
Bsp119I	TTCGAA	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	3 cut(s)	214, 522, 865
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	3 cut(s)	200, 314, 916
BspANI	GGCC	2 cut(s)	1138, 1353
BspCNI	CTCAG	2 cut(s)	328, 1248
BspMAI	CTGCAG	2 cut(s)	41, 1206
BspPI	GGATC	1 cut(s)	873
BspQI	GCTCTTC	1 cut(s)	1485
BspT104I	TTCGAA	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	916
BsrGI	TGTACA	1 cut(s)	694
BsrI	ACTGG	4 cut(s)	877, 991, 1420, 1481
BssECI	CCNNGG	2 cut(s)	612, 1139
BssMI	GATC	3 cut(s)	214, 522, 865
BssSI	CACGAG	1 cut(s)	278
BssT1I	CCWWGG	2 cut(s)	612, 1139
Bst2BI	CACGAG	1 cut(s)	278
Bst2UI	CCWGG	3 cut(s)	441, 1035, 1355
Bst4CI	ACNGT	3 cut(s)	694, 953, 983
Bst6I	CTCTTC	5 cut(s)	61, 171, 1097, 1357, 1485
BstAUI	TGTACA	1 cut(s)	694
BstBI	TTCGAA	1 cut(s)	294
BstC8I	GCNNGC	5 cut(s)	245, 659, 747, 878, 1164
BstDEI	CTNAG	4 cut(s)	336, 458, 827, 1256
BstF5I	GGATG	2 cut(s)	245, 1354
BstHHI	GCGC	1 cut(s)	1157
BstKTI	GATC	3 cut(s)	217, 525, 868
BstMBI	GATC	3 cut(s)	214, 522, 865
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 188, 755, 785, 1163
BstNI	CCWGG	3 cut(s)	441, 1035, 1355
BstNSI	RCATGY	4 cut(s)	110, 646, 880, 1319
BstSCI	CCNGG	3 cut(s)	439, 1033, 1353
BstSFI	CTRYAG	4 cut(s)	37, 183, 768, 1202
BstSLI	GKGCMC	1 cut(s)	469
BstV1I	GCAGC	4 cut(s)	145, 303, 327, 775
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	1138, 1353
BtsCI	GGATG	2 cut(s)	245, 1354
BtsIMutI	CAGTG	5 cut(s)	690, 801, 849, 870, 1049
Cac8I	GCNNGC	5 cut(s)	245, 659, 747, 878, 1164
CaiI	CAGNNNCTG	1 cut(s)	1255
CfoI	GCGC	1 cut(s)	1157
Cfr13I	GGNCC	1 cut(s)	1136
Csp6I	GTAC	3 cut(s)	695, 949, 984
CviQI	GTAC	3 cut(s)	695, 949, 984
DdeI	CTNAG	4 cut(s)	336, 458, 827, 1256
DpnI	GATC	3 cut(s)	216, 524, 867
DpnII	GATC	3 cut(s)	214, 522, 865
DraI	TTTAAA	1 cut(s)	1389
Eam1104I	CTCTTC	5 cut(s)	61, 171, 1097, 1357, 1485
EarI	CTCTTC	5 cut(s)	61, 171, 1097, 1357, 1485
Eco130I	CCWWGG	2 cut(s)	612, 1139
Eco57I	CTGAAG	5 cut(s)	697, 741, 825, 1121, 1260
EcoO109I	RGGNCCY	1 cut(s)	1136
EcoRI	GAATTC	2 cut(s)	588, 1305
EcoRII	CCWGG	3 cut(s)	439, 1033, 1353
EcoT14I	CCWWGG	2 cut(s)	612, 1139
ErhI	CCWWGG	2 cut(s)	612, 1139
FalI	AAGNNNNNCTT	4 cut(s)	201, 233, 1094, 1126
FaqI	GGGAC	1 cut(s)	1016
FblI	GTMKAC	1 cut(s)	1180
Fnu4HI	GCNGC	5 cut(s)	159, 200, 317, 341, 764
FokI	GGATG	2 cut(s)	252, 1361
Fsp4HI	GCNGC	5 cut(s)	159, 200, 317, 341, 764
FspBI	CTAG	3 cut(s)	87, 434, 750
GlaI	GCGC	1 cut(s)	1156
GluI	GCNGC	5 cut(s)	159, 200, 317, 341, 764
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	1138, 1353
HhaI	GCGC	1 cut(s)	1157
Hin6I	GCGC	1 cut(s)	1155
HinP1I	GCGC	1 cut(s)	1155
HindIII	AAGCTT	2 cut(s)	1019, 1147
HinfI	GANTC	7 cut(s)	405, 549, 899, 1066, 1234, 1267, 1376
HphI	GGTGA	2 cut(s)	786, 1049
Hpy166II	GTNNAC	2 cut(s)	467, 1181
Hpy188I	TCNGA	4 cut(s)	522, 554, 721, 963
Hpy8I	GTNNAC	2 cut(s)	467, 1181
HpyAV	CCTTC	4 cut(s)	380, 800, 1040, 1295
HpyCH4III	ACNGT	3 cut(s)	694, 953, 983
HpyCH4IV	ACGT	2 cut(s)	139, 310
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 188, 755, 785, 1163
HpyF3I	CTNAG	4 cut(s)	336, 458, 827, 1256
HpySE526I	ACGT	2 cut(s)	139, 310
HspAI	GCGC	1 cut(s)	1155
Kzo9I	GATC	3 cut(s)	214, 522, 865
LguI	GCTCTTC	1 cut(s)	1485
Lsp1109I	GCAGC	4 cut(s)	145, 303, 327, 775
LweI	GCATC	3 cut(s)	230, 597, 1242
MaeI	CTAG	3 cut(s)	87, 434, 750
MaeII	ACGT	2 cut(s)	139, 310
MaeIII	GTNAC	2 cut(s)	839, 1420
MalI	GATC	3 cut(s)	216, 524, 867
MbiI	CCGCTC	1 cut(s)	916
MboI	GATC	3 cut(s)	214, 522, 865
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	469
MlyI	GAGTC	3 cut(s)	399, 893, 1228
MroXI	GAANNNNTTC	1 cut(s)	1305
MseI	TTAA	3 cut(s)	680, 1371, 1388
MslI	CAYNNNNRTG	2 cut(s)	602, 875
MspA1I	CMGCKG	2 cut(s)	202, 316
MspR9I	CCNGG	3 cut(s)	441, 1035, 1355
MvaI	CCWGG	3 cut(s)	441, 1035, 1355
MwoI	GCNNNNNNNGC	5 cut(s)	155, 188, 755, 785, 1163
NdeII	GATC	3 cut(s)	214, 522, 865
NmuCI	GTSAC	1 cut(s)	839
NspI	RCATGY	4 cut(s)	110, 646, 880, 1319
NspV	TTCGAA	1 cut(s)	294
PaeI	GCATGC	1 cut(s)	880
PciSI	GCTCTTC	1 cut(s)	1485
PcsI	WCGNNNNNNNCGW	1 cut(s)	742
PdmI	GAANNNNTTC	1 cut(s)	1305
PfeI	GAWTC	4 cut(s)	549, 1066, 1267, 1376
PflMI	CCANNNNNTGG	1 cut(s)	653
PkrI	GCNGC	5 cut(s)	160, 201, 318, 342, 765
PleI	GAGTC	3 cut(s)	399, 893, 1228
PpsI	GAGTC	3 cut(s)	399, 893, 1228
Psp6I	CCWGG	3 cut(s)	439, 1033, 1353
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	3 cut(s)	439, 1033, 1353
PspPI	GGNCC	1 cut(s)	1136
PstI	CTGCAG	2 cut(s)	41, 1206
PstNI	CAGNNNCTG	1 cut(s)	1255
PsuI	RGATCY	1 cut(s)	214
RsaI	GTAC	3 cut(s)	696, 950, 985
RsaNI	GTAC	3 cut(s)	695, 949, 984
RseI	CAYNNNNRTG	2 cut(s)	602, 875
SapI	GCTCTTC	1 cut(s)	1485
SaqAI	TTAA	3 cut(s)	680, 1371, 1388
SatI	GCNGC	5 cut(s)	159, 200, 317, 341, 764
Sau3AI	GATC	3 cut(s)	214, 522, 865
Sau96I	GGNCC	1 cut(s)	1136
SchI	GAGTC	3 cut(s)	399, 893, 1228
ScrFI	CCNGG	3 cut(s)	441, 1035, 1355
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	3 cut(s)	230, 597, 1242
SfcI	CTRYAG	4 cut(s)	37, 183, 768, 1202
SfuI	TTCGAA	1 cut(s)	294
SmiMI	CAYNNNNRTG	2 cut(s)	602, 875
SmlI	CTYRAG	1 cut(s)	1310
SmoI	CTYRAG	1 cut(s)	1310
SphI	GCATGC	1 cut(s)	880
SsiI	CCGC	3 cut(s)	200, 314, 916
SspMI	CTAG	3 cut(s)	87, 434, 750
StyD4I	CCNGG	3 cut(s)	439, 1033, 1353
StyI	CCWWGG	2 cut(s)	612, 1139
TaaI	ACNGT	3 cut(s)	694, 953, 983
TaiI	ACGT	2 cut(s)	142, 313
TaqI	TCGA	2 cut(s)	294, 978
TatI	WGTACW	3 cut(s)	694, 948, 983
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	4 cut(s)	549, 1066, 1267, 1376
Tru1I	TTAA	3 cut(s)	680, 1371, 1388
Tru9I	TTAA	3 cut(s)	680, 1371, 1388
TscAI	CASTG	5 cut(s)	697, 808, 856, 877, 1056
TseFI	GTSAC	1 cut(s)	839
TseI	GCWGC	4 cut(s)	158, 316, 340, 763
Tsp45I	GTSAC	1 cut(s)	839
TspDTI	ATGAA	5 cut(s)	15, 221, 339, 746, 1206
TspGWI	ACGGA	1 cut(s)	751
TspRI	CASTG	5 cut(s)	697, 808, 856, 877, 1056
Van91I	CCANNNNNTGG	1 cut(s)	653
VneI	GTGCAC	1 cut(s)	465
XapI	RAATTY	4 cut(s)	489, 588, 790, 1305
XceI	RCATGY	4 cut(s)	110, 646, 880, 1319
XmiI	GTMKAC	1 cut(s)	1180
XmnI	GAANNNNTTC	1 cut(s)	1305
XspI	CTAG	3 cut(s)	87, 434, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.