Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Forward (+)

34029834 .. 34035784

Gene Structure 5951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG305000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3387 bp

ATGACACAGGACGAAGCAATGGAAGAGAGCAAACATAAATCTAGGAAGGAAGGGGAAGCTAAGAGGAGTCATCGAGATCGGGATCGTGAGAAGGAGAAGAAAGTAGATAGACACAGAGAAAAAGATAGAGGAGATAAGAGTCGTGACAGCCGACGATATGAGCGAGAAAAGAGTTCTGATTCTGAGGAGAGGTACGTGAGAGAGAAACATCGAGATAAGGAGGTTGATAGCATACGAGGCAGAGATGATGAACGAGAGAGAAGCAAAGATGGGAAAAGGGATAAAGATAAAGAGAGGGACAAGGAGAGGGAGAGGGAGAGAGTCAAAGAAAAGGAGAAGAGGGAGCGGAAGGAGAGGGAAAGAGAAAAAGAGAGGGAGAGAAGGGAACGTGAAAGGGAGGCAGAAGAGAGGGCGAGGGAGAAGAGGGAGAGGGAAAAGGAAAAAGATCGAGAGAGGAGGATAAGGGAGAGGGAGAGGCATAGGGATGTTGATACTGATGATTCTGAGGATGATCTTAGGGAGCGTGGTAGGAAGCGGCATAAGAAGAGTGATAGCGAGTACAAGGAGAGAGATCGGGAAAGGAGTATTAGTAGGTCAAACAGACATAGGGATGATGGAATTGAGAGCCCAAGAAAGAGGAGTGTTGAAGATGATTCAGATAAAAAGGAGAAGCCAACCCGTGAGGAGGAGTTAGAGGACGAACAACGGAAATTGGATGAGGAAATGGAAAAGCGGAGGAGGAGAGTTCAGGAGTGGCAAGAGTTAAAGAGAAAGAAGGAAGAAGATGAGAGAGAGAAGCGTGGGGAAGATAATGTTGATGACACCAAGTCTGGAAAGACCTGGACTCTTGATGGAGAATCTGATGACGAAGAAGCAGGCAAATCAGAGACAGGTATGGACGTTGATAGGGAGGTCAATGGGGATGATCTTACTGATGGAGAAGTTGTAGATGCCATCGTGCCAGATATTAATACAACAGCTGCTGCAGGGAATGAGGAAGTTGATCCATTAGAAGCTTTTATGCAATCTGTGGTGATGCCCGAAGTTGCGAAGCTGAATGCTACTGTGGAACCCTCAATTGTTGATGACAAGAACAAGGAGAAAAAGGTTGATACAAGTAATGGTGAAAAGCTGAGGGCAGGTTCAAATAAATCTATTGGCAGAATAATTCCTGGGGAGGATTCTGACTCGGATTACGGGGACCTTGAGAATGATGATGATCCTTTAGAAAATGAAGATGATGATGAGTTCATAAAAAGGGTGAAAAAGACGAAAGCTGAGAAACTTTCCTTAGTTGACCACTCGAAGATAGATTATATACCATTCCGTAAAAATTTTTATATCGAGGTGAAGGAGATCTCAAGGATGACGCCAGATGAGGTTGGTGCATACCGGAAACAATTGGAATTGAAGATACATGGTAAGGATGTGCCAAAGCCCATAAAGAGCTGGCACCAAACTGGACTTACAAGTAAAATCTTGGATATAATAAAGAAGCTCAACTATGAAAAGCCAATGCCAATTCAAGCTCAGGCACTGCCCATAATTATGAGTGGTCGAGACTGCATTGGCGTTGGAAAAACTGGATCAGGCAAAACCCTTGCATTTGTACTGCCAATGCTGAGGCATATCAAGGACCAGCCACCTGTGGTAGCTGGGGATGGGCCTATTGGGCTTATTATGGCACCAACCAGGGAGCTTGTTCAGCAGATTCACAGTGATATCAAAAAGTTTGCCAAGGTTCTGGGTCTCAGGTGTGTGCCTGTATACGGAGGTTCAGGTGTTGCACAACAAATTAGTGAACTGAAGCGGGGTGCTGAAATTGTTGTCTGTACTCCTGGTAGGATGATTGACATACTTTGCACAAGTGGAGGAAAAATTACAAATCTGCGTAGAGTAACTTATTTGGTCATGGATGAAGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACTCGAATTGTTCAAAATATTCGTCCAGATCGCCAAACCGTATTATTTTCTGCCACTTTCCCTCGGCAGGTTGAAGTTTTGGCTCGTAAAGTCTTAGATAAACCTGTGGAAATACAAGTTGGCGGAAGGAGTGTTGTGAATAAGGACATCATGCAATTGGTCGAAGTGAGGCAGGAACATGAAAGGTTCTTGAGATTGTTAGAGTTACTTGGAGAATGGTATGAAAAAGGAAAAATTTTGATATTTGTACAATCGCAGGACAAATGTGATGCTTTATTTAGAGATCTGCTTAAGCATGGATATCCTTGTCTCTCACTTCATGGGGCCAAAGATCAAACAGATCGTGAGTCCACCATAGCTGATTTTAAGAGCAATGTTTGTAATTTGTTGATTGCAACCAGTGTTGCTGCTAGAGGGCTAGATGTCAAGGAGCTTGAACTGGTGATAAATTTTGATGTCCCAAATCACTATGAGGACTATGTTCACCGTGTTGGACGTACTGGCCGTGCTGGCCGGAAAGGCTGTGCTATAACTTTTGTCTCTGAGGAAGATGCTAGATATGCTCCAGATCTTGTGAAAGCATTGGAACTTTCTGAGCAAGTTGTTCCAGATGACTTGAAATCTCTTGCTGATAATTTTATGTCAAAAGTAAATCAGGGACTTGCACAAGCCCATGGGACTGGTTATGGGGGAAGTGGCTTTAAATTTAATGTAGAGGAAGATGAAGTAAGGAGAGCGGCAAAGAAAGCACAGGCCAAAGAATATGGTTTTGAGGAAGACAAGTCAGATTCAGAAGATGAAGATGAAGGTATTCGAAAAGCAGGGGGTGATATCTCTCAGCAGGCTGCTCTTGCTCAGATAGCTGCTATTGCTGCTGCCTCCAAAGCTACTACAGCAATGCAGACTCCTGCTTCTGCTGCCCAACTGCTTCCCAACGGTGGACTGCCTGTCGCTCTTCCAGGCGTTGGTGGTGTAGGTGCATTACCAGGAACAGCAGCAGTTGTGCCTGGGACTGGTCTGCCTCTTGTTGGCAGTGATGGGGCAGCTCGGGCTGCAGCACTTGCGGCTGCCATGAACTTACAGCATAACCTGGCAAAGATCCACGCTGATGCAATGCCTGAACACTATGAAGCAGAATTGGAGATAAATGATTTTCCCCAGAATGCTAGATGGAAAGTCACCCACAAGGAAACGTTGGGCCCTATATCAGAGTGGACTGGAGCTGCGATTACTACCAGGGGTCAGTATTTCCCACCAGGGAAGGTTCCAGGACCAGGAGATCGCAAGCTCTACTTGTTTATTGAGGGCCCTACCGAACAGTCTGTCAAGAGAGCTAAAGCAGAATTAAAAGGTGTTTTGGAAGAGATCTCAAATCAGGCATTATCACTCCCTGGAGGGAATCAGCAAGGCAGATATCAAGTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

1128

Amino Acids

127.87

Weight (kDa)

5.89

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	507 - 678	1.6e-49	DEAD/DEAH box helicase
Helicase_C	PF00271	718 - 824	2e-29	Helicase conserved C-terminal domain
KH_12	PF23469	1030 - 1106	4.6e-14	KH-domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1130, 2017
AccB1I	GGYRCC	2 cut(s)	1452, 1684
AccB7I	CCANNNNNTGG	1 cut(s)	2924
AccBSI	CCGCTC	2 cut(s)	346, 2696
AccI	GTMKAC	1 cut(s)	1767
AciI	CCGC	7 cut(s)	346, 535, 733, 1810, 2082, 2696, 3023
AclI	AACGTT	1 cut(s)	3152
AclWI	GGATC	5 cut(s)	90, 998, 1214, 1594, 3052
AcoI	YGGCCR	2 cut(s)	2461, 2470
AcsI	RAATTY	4 cut(s)	1333, 2193, 2407, 2663
AcuI	CTGAAG	1 cut(s)	1826
AcyI	GRCGYC	1 cut(s)	1370
AfaI	GTAC	6 cut(s)	194, 560, 1611, 1834, 2208, 2458
AfiI	CCNNNNNNNGG	8 cut(s)	685, 1769, 2026, 2897, 2924, 2972, 2987, 3233
AflII	CTTAAG	1 cut(s)	2249
AgsI	TTSAA	9 cut(s)	647, 1146, 1411, 1526, 1949, 1973, 2033, 2396, 2578
AhdI	GACNNNNNGTC	2 cut(s)	826, 2906
AjuI	GAANNNNNNNTTGG	2 cut(s)	2061, 2093
Alw26I	GTCTC	5 cut(s)	881, 1554, 1754, 2273, 2503
AlwI	GGATC	5 cut(s)	90, 998, 1214, 1594, 3052
AlwNI	CAGNNNCTG	2 cut(s)	983, 1537
Ama87I	CYCGRG	1 cut(s)	3006
AoxI	GGCC	7 cut(s)	1664, 2283, 2461, 2470, 2712, 3157, 3265
ApaI	GGGCCC	2 cut(s)	3161, 3269
ApoI	RAATTY	4 cut(s)	1333, 2193, 2407, 2663
ArsI	GACNNNNNNTTYG	6 cut(s)	1928, 1960, 1966, 1998, 3267, 3299
AseI	ATTAAT	1 cut(s)	969
Asp700I	GAANNNNTTC	1 cut(s)	2769
AspS9I	GGNCC	9 cut(s)	1201, 1636, 1664, 2283, 3157, 3158, 3230, 3265, 3266
AsuHPI	GGTGA	8 cut(s)	1045, 1136, 1273, 1360, 2413, 2435, 2798, 3130
AsuII	TTCGAA	1 cut(s)	2773
AvaI	CYCGRG	1 cut(s)	3006
AvaII	GGWCC	3 cut(s)	1201, 1636, 3230
BaeGI	GKGCMC	2 cut(s)	3161, 3269
BanI	GGYRCC	2 cut(s)	1452, 1684
BanII	GRGCYC	3 cut(s)	629, 3161, 3269
BbsI	GAAGAC	1 cut(s)	2742
BbvCI	CCTCAGC	2 cut(s)	1133, 1622
BccI	CCATC	8 cut(s)	263, 608, 845, 929, 962, 1655, 2990, 3123
BceAI	ACGGC	1 cut(s)	2448
BcoDI	GTCTC	5 cut(s)	881, 1554, 1754, 2273, 2503
BfaI	CTAG	5 cut(s)	42, 2370, 2378, 2514, 3126
BfmI	CTRYAG	3 cut(s)	984, 2850, 3012
BfrI	CTTAAG	1 cut(s)	2249
BfuAI	ACCTGC	2 cut(s)	1130, 2017
BglI	GCCNNNNNGGC	3 cut(s)	1672, 2469, 2478
BglII	AGATCT	4 cut(s)	1356, 2242, 2527, 3324
Bme18I	GGWCC	3 cut(s)	1201, 1636, 3230
BmeRI	GACNNNNNGTC	2 cut(s)	826, 2906
BmeT110I	CYCGRG	1 cut(s)	3006
BmgT120I	GGNCC	9 cut(s)	1201, 1636, 1664, 2283, 3157, 3158, 3230, 3265, 3266
BmiI	GGNNCC	8 cut(s)	1071, 1202, 1454, 1686, 2284, 3159, 3225, 3267
BmsI	GCATC	5 cut(s)	940, 1026, 2218, 2500, 3058
BpiI	GAAGAC	1 cut(s)	2742
BpmI	CTGGAG	3 cut(s)	2508, 3198, 3372
Bpu10I	CCTNAGC	3 cut(s)	1133, 1530, 1622
Bpu14I	TTCGAA	1 cut(s)	2773
BpuEI	CTTGAG	3 cut(s)	1226, 1345, 2170
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	2 cut(s)	81, 1218
BsaHI	GRCGYC	1 cut(s)	1370
BsaI	GGTCTC	1 cut(s)	1754
BsaJI	CCNNGG	9 cut(s)	1172, 1692, 1737, 2021, 2632, 2966, 3195, 3215, 3349
BsaWI	WCCGGW	1 cut(s)	1392
BsaXI	ACNNNNNCTCC	4 cut(s)	574, 604, 930, 960
Bsc4I	CCNNNNNNNGG	8 cut(s)	685, 1769, 2026, 2897, 2924, 2972, 2987, 3233
Bse1I	ACTGG	8 cut(s)	1465, 1588, 2358, 2403, 2464, 2644, 2977, 3181
Bse3DI	GCAATG	4 cut(s)	24, 2338, 2862, 3078
Bse8I	GATNNNNATC	2 cut(s)	81, 1218
BseDI	CCNNGG	9 cut(s)	1172, 1692, 1737, 2021, 2632, 2966, 3195, 3215, 3349
BseJI	GATNNNNATC	2 cut(s)	81, 1218
BseLI	CCNNNNNNNGG	8 cut(s)	685, 1769, 2026, 2897, 2924, 2972, 2987, 3233
BseMI	GCAATG	4 cut(s)	24, 2338, 2862, 3078
BseNI	ACTGG	8 cut(s)	1465, 1588, 2358, 2403, 2464, 2644, 2977, 3181
BseRI	GAGGAG	9 cut(s)	79, 144, 200, 469, 652, 698, 701, 751, 754
BseSI	GKGCMC	2 cut(s)	3161, 3269
BseYI	CCCAGC	1 cut(s)	1655
BshFI	GGCC	7 cut(s)	1666, 2285, 2463, 2472, 2714, 3159, 3267
BshNI	GGYRCC	2 cut(s)	1452, 1684
BsiHKCI	CYCGRG	1 cut(s)	3006
BsiSI	CCGG	2 cut(s)	1393, 2473
BslFI	GGGAC	6 cut(s)	311, 1214, 2402, 2631, 2650, 2983
BslI	CCNNNNNNNGG	8 cut(s)	685, 1769, 2026, 2897, 2924, 2972, 2987, 3233
BsmAI	GTCTC	5 cut(s)	881, 1554, 1754, 2273, 2503
BsmFI	GGGAC	6 cut(s)	311, 1214, 2402, 2631, 2650, 2983
BsmI	GAATGC	2 cut(s)	1063, 3127
BsnI	GGCC	7 cut(s)	1666, 2285, 2463, 2472, 2714, 3159, 3267
Bso31I	GGTCTC	1 cut(s)	1754
BsoBI	CYCGRG	1 cut(s)	3006
Bsp119I	TTCGAA	1 cut(s)	2773
Bsp120I	GGGCCC	2 cut(s)	3157, 3265
Bsp1286I	GDGCHC	3 cut(s)	629, 3161, 3269
Bsp1407I	TGTACA	1 cut(s)	2206
Bsp19I	CCATGG	1 cut(s)	2632
BspACI	CCGC	7 cut(s)	346, 535, 733, 1810, 2082, 2696, 3023
BspANI	GGCC	7 cut(s)	1666, 2285, 2463, 2472, 2714, 3159, 3267
BspLI	GGNNCC	8 cut(s)	1071, 1202, 1454, 1686, 2284, 3159, 3225, 3267
BspMAI	CTGCAG	2 cut(s)	988, 3016
BspMI	ACCTGC	2 cut(s)	1130, 2017
BspPI	GGATC	5 cut(s)	90, 998, 1214, 1594, 3052
BspQI	GCTCTTC	1 cut(s)	2919
BspT104I	TTCGAA	1 cut(s)	2773
BspT107I	GGYRCC	2 cut(s)	1452, 1684
BspTI	CTTAAG	1 cut(s)	2249
BspTNI	GGTCTC	1 cut(s)	1754
BsrBI	CCGCTC	2 cut(s)	346, 2696
BsrDI	GCAATG	4 cut(s)	24, 2338, 2862, 3078
BsrGI	TGTACA	1 cut(s)	2206
BsrI	ACTGG	8 cut(s)	1465, 1588, 2358, 2403, 2464, 2644, 2977, 3181
BssECI	CCNNGG	9 cut(s)	1172, 1692, 1737, 2021, 2632, 2966, 3195, 3215, 3349
BssNAI	GTATAC	1 cut(s)	1768
BssNI	GRCGYC	1 cut(s)	1370
BssT1I	CCWWGG	2 cut(s)	1737, 2632
Bst1107I	GTATAC	1 cut(s)	1768
Bst4CI	ACNGT	6 cut(s)	1066, 1718, 1999, 2447, 2897, 3279
Bst6I	CTCTTC	7 cut(s)	18, 332, 399, 416, 539, 2919, 3315
BstACI	GRCGYC	1 cut(s)	1370
BstAFI	CTTAAG	1 cut(s)	2249
BstAPI	GCANNNNNTGC	1 cut(s)	3020
BstAUI	TGTACA	1 cut(s)	2206
BstBAI	YACGTR	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	2773
BstC8I	GCNNGC	5 cut(s)	877, 1451, 2470, 2802, 3245
BstDSI	CCRYGG	1 cut(s)	2632
BstMAI	GTCTC	5 cut(s)	881, 1554, 1754, 2273, 2503
BstSFI	CTRYAG	3 cut(s)	984, 2850, 3012
BstSLI	GKGCMC	2 cut(s)	3161, 3269
BstV2I	GAAGAC	1 cut(s)	2742
BstX2I	RGATCY	5 cut(s)	1356, 2242, 2527, 3057, 3324
BstXI	CCANNNNNNTGG	2 cut(s)	1744, 2639
BstYI	RGATCY	5 cut(s)	1356, 2242, 2527, 3057, 3324
BstZ17I	GTATAC	1 cut(s)	1768
BsuRI	GGCC	7 cut(s)	1666, 2285, 2463, 2472, 2714, 3159, 3267
BtgI	CCRYGG	1 cut(s)	2632
BtsI	GCAGTG	2 cut(s)	1535, 2998
BtsIMutI	CAGTG	4 cut(s)	1535, 1723, 2365, 2998
BveI	ACCTGC	2 cut(s)	1130, 2017
Cac8I	GCNNGC	5 cut(s)	877, 1451, 2470, 2802, 3245
CaiI	CAGNNNCTG	2 cut(s)	983, 1537
Cfr13I	GGNCC	9 cut(s)	1201, 1636, 1664, 2283, 3157, 3158, 3230, 3265, 3266
CseI	GACGC	1 cut(s)	1378
Csp6I	GTAC	6 cut(s)	193, 559, 1610, 1833, 2207, 2457
CviAII	CATG	9 cut(s)	1418, 1912, 1939, 2110, 2138, 2255, 2279, 2633, 3031
CviQI	GTAC	6 cut(s)	193, 559, 1610, 1833, 2207, 2457
DraI	TTTAAA	1 cut(s)	2662
DriI	GACNNNNNGTC	2 cut(s)	826, 2906
EaeI	YGGCCR	2 cut(s)	2461, 2470
Eam1104I	CTCTTC	7 cut(s)	18, 332, 399, 416, 539, 2919, 3315
Eam1105I	GACNNNNNGTC	2 cut(s)	826, 2906
EarI	CTCTTC	7 cut(s)	18, 332, 399, 416, 539, 2919, 3315
EciI	GGCGGA	1 cut(s)	2097
Eco130I	CCWWGG	2 cut(s)	1737, 2632
Eco24I	GRGCYC	3 cut(s)	629, 3161, 3269
Eco31I	GGTCTC	1 cut(s)	1754
Eco32I	GATATC	4 cut(s)	1723, 2261, 2791, 3374
Eco47I	GGWCC	3 cut(s)	1201, 1636, 3230
Eco57I	CTGAAG	1 cut(s)	1826
Eco88I	CYCGRG	1 cut(s)	3006
EcoO109I	RGGNCCY	4 cut(s)	1201, 3158, 3265, 3266
EcoRV	GATATC	4 cut(s)	1723, 2261, 2791, 3374
EcoT14I	CCWWGG	2 cut(s)	1737, 2632
EcoT38I	GRGCYC	3 cut(s)	629, 3161, 3269
ErhI	CCWWGG	2 cut(s)	1737, 2632
FaeI	CATG	9 cut(s)	1421, 1915, 1942, 2113, 2141, 2258, 2282, 2636, 3034
FalI	AAGNNNNNCTT	2 cut(s)	3236, 3268
FaqI	GGGAC	6 cut(s)	311, 1214, 2402, 2631, 2650, 2983
FatI	CATG	9 cut(s)	1417, 1911, 1938, 2109, 2137, 2254, 2278, 2632, 3030
FauI	CCCGC	1 cut(s)	1803
FblI	GTMKAC	1 cut(s)	1767
FriOI	GRGCYC	3 cut(s)	629, 3161, 3269
FspBI	CTAG	5 cut(s)	42, 2370, 2378, 2514, 3126
GsaI	CCCAGC	1 cut(s)	1659
GsuI	CTGGAG	3 cut(s)	2508, 3198, 3372
HaeIII	GGCC	7 cut(s)	1666, 2285, 2463, 2472, 2714, 3159, 3267
HapII	CCGG	2 cut(s)	1393, 2473
HgaI	GACGC	1 cut(s)	1378
Hin1I	GRCGYC	1 cut(s)	1370
Hin1II	CATG	9 cut(s)	1421, 1915, 1942, 2113, 2141, 2258, 2282, 2636, 3034
HincII	GTYRAC	1 cut(s)	1297
HindII	GTYRAC	1 cut(s)	1297
HindIII	AAGCTT	1 cut(s)	1014
HpaII	CCGG	2 cut(s)	1393, 2473
HphI	GGTGA	8 cut(s)	1045, 1136, 1273, 1360, 2413, 2435, 2798, 3130
Hpy166II	GTNNAC	7 cut(s)	1297, 1768, 1802, 2310, 2443, 2900, 3174
Hpy8I	GTNNAC	7 cut(s)	1297, 1768, 1802, 2310, 2443, 2900, 3174
Hpy99I	CGWCG	1 cut(s)	156
HpyCH4III	ACNGT	6 cut(s)	1066, 1718, 1999, 2447, 2897, 3279
HpyCH4IV	ACGT	5 cut(s)	195, 388, 900, 2455, 3152
HpySE526I	ACGT	5 cut(s)	195, 388, 900, 2455, 3152
Hsp92I	GRCGYC	1 cut(s)	1370
Hsp92II	CATG	9 cut(s)	1421, 1915, 1942, 2113, 2141, 2258, 2282, 2636, 3034
LguI	GCTCTTC	1 cut(s)	2919
LmnI	GCTCC	6 cut(s)	343, 520, 1696, 2389, 2527, 3179
LweI	GCATC	5 cut(s)	940, 1026, 2218, 2500, 3058
MaeI	CTAG	5 cut(s)	42, 2370, 2378, 2514, 3126
MaeII	ACGT	5 cut(s)	195, 388, 900, 2455, 3152
MaeIII	GTNAC	4 cut(s)	143, 1897, 2163, 3136
MbiI	CCGCTC	2 cut(s)	346, 2696
MfeI	CAATTG	3 cut(s)	1077, 1400, 2114
MflI	RGATCY	5 cut(s)	1356, 2242, 2527, 3057, 3324
MhlI	GDGCHC	3 cut(s)	629, 3161, 3269
MlyI	GAGTC	7 cut(s)	76, 148, 330, 838, 1181, 2315, 2857
MmeI	TCCRAC	2 cut(s)	1555, 2431
MroXI	GAANNNNTTC	1 cut(s)	2769
MseI	TTAA	7 cut(s)	764, 969, 2250, 2325, 2661, 2667, 3305
MslI	CAYNNNNRTG	4 cut(s)	483, 609, 1547, 3066
MspA1I	CMGCKG	1 cut(s)	980
MspCI	CTTAAG	1 cut(s)	2249
MspI	CCGG	2 cut(s)	1393, 2473
MunI	CAATTG	3 cut(s)	1077, 1400, 2114
Mva1269I	GAATGC	2 cut(s)	1063, 3127
NcoI	CCATGG	1 cut(s)	2632
NlaIII	CATG	9 cut(s)	1421, 1915, 1942, 2113, 2141, 2258, 2282, 2636, 3034
NlaIV	GGNNCC	8 cut(s)	1071, 1202, 1454, 1686, 2284, 3159, 3225, 3267
NmeAIII	GCCGAG	1 cut(s)	2002
NmuCI	GTSAC	2 cut(s)	143, 3136
NspV	TTCGAA	1 cut(s)	2773
PciSI	GCTCTTC	1 cut(s)	2919
PcsI	WCGNNNNNNNCGW	3 cut(s)	148, 160, 2461
PctI	GAATGC	2 cut(s)	1063, 3127
PdmI	GAANNNNTTC	1 cut(s)	2769
PfeI	GAWTC	8 cut(s)	179, 500, 653, 857, 1181, 1711, 2747, 3358
PflMI	CCANNNNNTGG	1 cut(s)	2924
PfoI	TCCNGGA	1 cut(s)	3226
PleI	GAGTC	7 cut(s)	75, 147, 329, 838, 1181, 2314, 2857
PpsI	GAGTC	7 cut(s)	75, 147, 329, 838, 1181, 2314, 2857
Ppu21I	YACGTR	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	1201
PshBI	ATTAAT	1 cut(s)	969
Psp1406I	AACGTT	1 cut(s)	3152
Psp5II	RGGWCCY	1 cut(s)	1201
PspFI	CCCAGC	1 cut(s)	1655
PspN4I	GGNNCC	8 cut(s)	1071, 1202, 1454, 1686, 2284, 3159, 3225, 3267
PspOMI	GGGCCC	2 cut(s)	3157, 3265
PspPI	GGNCC	9 cut(s)	1201, 1636, 1664, 2283, 3157, 3158, 3230, 3265, 3266
PspPPI	RGGWCCY	1 cut(s)	1201
PstI	CTGCAG	2 cut(s)	988, 3016
PstNI	CAGNNNCTG	2 cut(s)	983, 1537
PsuI	RGATCY	5 cut(s)	1356, 2242, 2527, 3057, 3324
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	6 cut(s)	194, 560, 1611, 1834, 2208, 2458
RsaNI	GTAC	6 cut(s)	193, 559, 1610, 1833, 2207, 2457
RseI	CAYNNNNRTG	4 cut(s)	483, 609, 1547, 3066
SapI	GCTCTTC	1 cut(s)	2919
SaqAI	TTAA	7 cut(s)	764, 969, 2250, 2325, 2661, 2667, 3305
Sau96I	GGNCC	9 cut(s)	1201, 1636, 1664, 2283, 3157, 3158, 3230, 3265, 3266
SchI	GAGTC	7 cut(s)	76, 148, 330, 838, 1181, 2315, 2857
SduI	GDGCHC	3 cut(s)	629, 3161, 3269
SfaNI	GCATC	5 cut(s)	940, 1026, 2218, 2500, 3058
SfcI	CTRYAG	3 cut(s)	984, 2850, 3012
SfiI	GGCCNNNNNGGCC	1 cut(s)	2469
SfuI	TTCGAA	1 cut(s)	2773
SinI	GGWCC	3 cut(s)	1201, 1636, 3230
SmiMI	CAYNNNNRTG	4 cut(s)	483, 609, 1547, 3066
SmlI	CTYRAG	4 cut(s)	1205, 1360, 2149, 2249
SmoI	CTYRAG	4 cut(s)	1205, 1360, 2149, 2249
SsiI	CCGC	7 cut(s)	346, 535, 733, 1810, 2082, 2696, 3023
SspI	AATATT	1 cut(s)	1978
SspMI	CTAG	5 cut(s)	42, 2370, 2378, 2514, 3126
StyI	CCWWGG	2 cut(s)	1737, 2632
TaaI	ACNGT	6 cut(s)	1066, 1718, 1999, 2447, 2897, 3279
TaiI	ACGT	5 cut(s)	198, 391, 903, 2458, 3155
TatI	WGTACW	4 cut(s)	558, 1609, 1832, 2206
TauI	GCSGC	3 cut(s)	538, 2699, 3026
TfiI	GAWTC	8 cut(s)	179, 500, 653, 857, 1181, 1711, 2747, 3358
Tru1I	TTAA	7 cut(s)	764, 969, 2250, 2325, 2661, 2667, 3305
Tru9I	TTAA	7 cut(s)	764, 969, 2250, 2325, 2661, 2667, 3305
TscAI	CASTG	4 cut(s)	1542, 1723, 2365, 2998
TseFI	GTSAC	2 cut(s)	143, 3136
Tsp45I	GTSAC	2 cut(s)	143, 3136
TspGWI	ACGGA	3 cut(s)	721, 1316, 1785
TspRI	CASTG	4 cut(s)	1542, 1723, 2365, 2998
Van91I	CCANNNNNTGG	1 cut(s)	2924
Vha464I	CTTAAG	1 cut(s)	2249
VpaK11BI	GGWCC	3 cut(s)	1201, 1636, 3230
VspI	ATTAAT	1 cut(s)	969
XapI	RAATTY	4 cut(s)	1333, 2193, 2407, 2663
XmiI	GTMKAC	1 cut(s)	1767
XmnI	GAANNNNTTC	1 cut(s)	2769
XspI	CTAG	5 cut(s)	42, 2370, 2378, 2514, 3126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.