Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000906

Physical Location & Seq

Genomic Coordinates Reverse (-)

13232880 .. 13235224

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTACAAGCCGACTTACAAATATTTTACTGTGGAATTCTCGAAAGATGATATCTGTAAGGATCTGAACAAAGTGTGGAAGAAAGAGGTGGAATCCGTCTTTGCATCTTATGGTCTATCCTGCAGAATGAATGAGGATGAGTGTAAAATGATCCTGGAAACAGGTAATACGGAGGACGAAGATATCATTAAAAGAGCTAGGCGTGTTCTCGGTGTTCTCGCATGTGGTCTGAGCACACAATGGGTTAAACCAATATTGCTCGGACAAATCTATTGTAATGCGATAAGGATAGAAAAACCAGACGGGATGAGTGAGGAAGAATTCTCAAGCTATTTTGATGATTTCATCGAAAAATTTGAAAACTTATATGAACTCCCTCGCAAGTGGTGCTGCTTCGTTCTTTATTTTGAAAAATGTATAACCGTTCTGGCTACTTCGTTTCAAGCAACAATGGCAGTGAGGTCCCTTGTTCAAGGCAGCCTTTTTGGGGATATCCCCTTTCAAGATAGTGTTGAGATGGTGATAAGAGGAATTGAAATGTCAGAGGAGGAGGAAAGTTTAACAAAGAATCTAGAGTTGTTCCGCTCTTTGCTTGCTACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

201

Amino Acids

23.35

Weight (kDa)

4.72

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT1G20920 AT3G09620 AT3G09620
fragaria_vesca	FvH4_3g27090 FvH4_4g11730 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270 FvH4_5g26270
malus_domestica	MD06G1002800.v1.1 MD09G1086200.v1.1
prunus_persica	Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1 Prupe.5G003900_v2.0.a1
pyrus_communis	pycom06g00290 pycom09g01160
rosa_chinensis	RchiOBHm_Chr5g0049651 RchiOBHm_Chr7g0217001
rosa_laevigata	RLG00000002515 RLG00000034630
rosa_multiflora	Rmu_co8441089.1_g000001 Rmu_sc0001725.1_g000004 Rmu_sc0002114.1_g000002 Rmu_sc0013777.1_g000004 Rmu_sc0013777.1_g000005
rosa_roxburghii	Rroxscaffold_1G00032010 Rroxscaffold_3G00242640
rosa_rugosa	Rorug05G0249600 Rorug05G0249700 Rorug05G0249800 Rorug05G0249900 Rorug05G0250000 Rorug05G0250100 Rorug05G0250200 Rorug07G0164800 Rorug07G0164900 Rorug07G0165000 Rorug07G0165100 Rorug07G0165200 Rorug07G0165300 Rorug07G0165400.1 Rorug07G0165500.1 Rorug07G0165600
rosa_samantha	Rh5AG326000 Rh5BG337300 Rh5CG362000 Rh5DG349500 Rh7AG305000 Rh7BG296500 Rh7CG324100 Rh7DG305100
rosa_wichuraiana	Rw5G030810 Rw7G025910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	585
AciI	CCGC	1 cut(s)	583
AclWI	GGATC	2 cut(s)	69, 145
AcsI	RAATTY	3 cut(s)	35, 320, 353
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	6 cut(s)	359, 410, 443, 473, 503, 536
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	197, 330
AluI	AGCT	2 cut(s)	197, 330
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	69, 145
ApeKI	GCWGC	2 cut(s)	390, 477
ApoI	RAATTY	3 cut(s)	35, 320, 353
AspS9I	GGNCC	1 cut(s)	462
AsuHPI	GGTGA	1 cut(s)	532
AvaII	GGWCC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	377, 489
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	155
BfaI	CTAG	2 cut(s)	198, 572
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	2 cut(s)	391, 478
BlsI	GCNGC	2 cut(s)	392, 479
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	142, 312
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	2 cut(s)	560, 563
BseXI	GCAGC	2 cut(s)	377, 489
BsiHKAI	GWGCWC	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	61, 150
BspACI	CCGC	1 cut(s)	583
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	2 cut(s)	69, 145
BsrBI	CCGCTC	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	3
BssMI	GATC	2 cut(s)	61, 150
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	2 cut(s)	31, 424
BstAPI	GCANNNNNTGC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	142, 312
BstKTI	GATC	2 cut(s)	64, 153
BstMBI	GATC	2 cut(s)	61, 150
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 452
BstNI	CCWGG	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	377, 489
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	142, 312
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	594
Cfr13I	GGNCC	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	5 cut(s)	10, 197, 330, 431, 480
CviKI_1	RGCY	5 cut(s)	10, 197, 330, 431, 480
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	2 cut(s)	63, 152
DpnII	GATC	2 cut(s)	61, 150
Eco32I	GATATC	3 cut(s)	52, 184, 493
Eco47I	GGWCC	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRI	GAATTC	2 cut(s)	35, 320
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	3 cut(s)	52, 184, 493
FaeI	CATG	1 cut(s)	225
FaiI	YATR	5 cut(s)	111, 223, 367, 369, 419
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	221
Fnu4HI	GCNGC	2 cut(s)	391, 478
FokI	GGATG	2 cut(s)	149, 319
Fsp4HI	GCNGC	2 cut(s)	391, 478
FspBI	CTAG	2 cut(s)	198, 572
GluI	GCNGC	2 cut(s)	391, 478
Hin1II	CATG	1 cut(s)	225
HinfI	GANTC	2 cut(s)	92, 568
HphI	GGTGA	1 cut(s)	532
Hpy188I	TCNGA	4 cut(s)	66, 231, 263, 544
Hpy188III	TCNNGA	3 cut(s)	40, 503, 572
HpyCH4III	ACNGT	2 cut(s)	31, 424
HpyCH4V	TGCA	2 cut(s)	104, 123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 452
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	61, 150
LpnPI	CCDG	6 cut(s)	133, 140, 147, 167, 312, 413
Lsp1109I	GCAGC	2 cut(s)	377, 489
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	2 cut(s)	198, 572
MalI	GATC	2 cut(s)	63, 152
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	2 cut(s)	61, 150
MboII	GAAGA	3 cut(s)	91, 191, 329
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	4 cut(s)	35, 320, 353, 531
MseI	TTAA	3 cut(s)	189, 246, 560
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	387, 452
NdeII	GATC	2 cut(s)	61, 150
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	92, 568
PfoI	TCCNGGA	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	392, 479
PpuMI	RGGWCCY	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	464
PspPI	GGNCC	1 cut(s)	462
PspPPI	RGGWCCY	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	189, 246, 560
SatI	GCNGC	2 cut(s)	391, 478
Sau3AI	GATC	2 cut(s)	61, 150
Sau96I	GGNCC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	5 cut(s)	90, 166, 199, 332, 464
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	121
SinI	GGWCC	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	35, 320, 353, 531
SsiI	CCGC	1 cut(s)	583
SspI	AATATT	2 cut(s)	23, 255
SspMI	CTAG	2 cut(s)	198, 572
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	31, 424
TaqI	TCGA	2 cut(s)	41, 348
TasI	AATT	4 cut(s)	35, 320, 353, 531
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	92, 568
Tru1I	TTAA	3 cut(s)	189, 246, 560
Tru9I	TTAA	3 cut(s)	189, 246, 560
TscAI	CASTG	1 cut(s)	462
TseI	GCWGC	2 cut(s)	390, 477
TspDTI	ATGAA	3 cut(s)	143, 334, 384
TspGWI	ACGGA	2 cut(s)	85, 185
TspRI	CASTG	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	462
XapI	RAATTY	3 cut(s)	35, 320, 353
XbaI	TCTAGA	1 cut(s)	571
XceI	RCATGY	1 cut(s)	225
XspI	CTAG	2 cut(s)	198, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.