Rw5G030810

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
49175628 .. 49180656
5029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030810.1

Sequence Viewer

Length: 3405 bp
ATGGAAGAGGGCAAACATAAGTCGAGGAAGGAGGGAGAATCCAAGAGGAGTCACCGAGATCGGGATCGCGAGAAGGAGAGCAATAAACAGAAACACAGGGATAAAGATAGAGATAAGAGAGACCGTGGTGCTCGACGTTCTGAGAAAGAGAAGAGTTATGATTCTGAAGAAAGGTATGATAAAGAGAAGCATCGAGACAAGGACAGTGATAGGGCGCGTACCCGAGATGATGAAAGAAAGAAAACAAGAGAAAGGAAGAGGGATAACAATAAAGAGAAGGACAAGGAGAGGGAGGGGGAGAAAGACAAAGAAAAGGAGAAGAGGGAGAGGGTTAGAGAGAAGGAAAGAGAAGGAGAAAGAGACAAGGAGAGGGAGAGAAGAGAACGAGAAAGAGAGGTTGAAGATAGGGTGAGAGAGAAGAGGGAGCATGAGAGGGAAAATGATAAAGATCGAGAGAGGAGGATAAGAGAGAGGGAGAGGCATAGGGATGCTGATACCGATGATATTGATGATCATGTTAGGGATCGTGATAGGAAGCGGCATAGGAATGATAAAAATGAGTACAAGGAGACAGACCGGGAAAGGAGTAGTAGTAGGGTAAAGACACATATGGATGATGGAGATGAGAGCCCACAAAAGAAAAGTGATGAAGATTCAGTTCAGAAGCCAACCCGTGAGGAGGAGTTAGAGAATGAACAAAGGAAATTGGATGAGGAGATGGAAAAACGTAGGAGGAGAGTTCAGGAGTGGCAAGAGTTAAAGAGAAAGAAGGAAGAAGATGAGAGAGATCATGGGGAAGGGCATGTTGATGAACCGATGTCCAGAAAGACCTGGACTCTTGAAGGAGAATCTGATGACGAAGAAGTTCATCCCTCAGGGACATCAGAGCCAGGTACAAACCTCAATGGAGAAGGCAATCTTATTGACAAAGAAGATGGAGATTTCATGGTAGATTCTGACAACGAAACAGCTGCACTTGCTTTACCAAATGGAGCTGATAATGCTAGCGGGGATGAGGAGACTGATCCGTTAGATGCTTTTATGAATTCTATGGTATTGCCTGAAGTTGAAAAGCTGGGCAGTGCTGCAGATGCATCAATTTCTGATGCGAAGAACGATAAAAAGGATGGTCGAAGTAATGGTGAACAGCAGAGGAGAGGTTTTAATAAATCTGTGGGAAGAATTATTCCTGGGGAGGATTCGGATTCCGATTTTGGGGACCTTGAGAATGATGACAATGTTTTAGAAGATGAAAATGACGACGAGTTCATCAAAAGGGTGAAAAAAACAAAAGCTGAGAAACTTTCTTTAGTTGATCACTCTAAGATAGATTATGAACCATTCCGCAAAAATTTTTATATTGAGGTGAAGGAGATCTCAAGGATGAGTCCAGAAGAGGTGGGTGCATGCCGGAAACAATTGGAATTGAAGATACACGGTAAGGATGTGCCGAAGCCCATTAAGACCTGGCATCAAACTGGACTTACCAGTAAAATTTTGGAAATAATAAAGAAAATGAACTTTGAAAAGCCTATGCCAATTCAGGCTCAGGCATTACCTGTAGTTATGAGTGGTCGAGACTGCATCGGCGTTGGGAAAACTGGATCAGGGAAAACCCTTGCATTTGTTTTGCCAATGCTGAGGCATATCAAGGATCAGCCACCCGTAGAAGCTGGAGATGGGCCTATTGGGCTTATAATGGCACCAACGAGGGAACTTGTTCAGCAGATCCACAGCGATATTAAAAGGTTTGCCAAGGTACTGGGTCTCAGGTGTGTGCCTGTATATGGAGGTTCTGGTGTTGCTCAACAGATTAGTGAATTAAAGCGGGGTGCTGAAATTGTTGTATGCACCCCTGGTAGGATGATTGACATACTTTGCACAAGTGGAGGGAAAATAACAAATCTGCGTAGAGTAACTTTTTTGGTCATGGATGAAGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAAATCACTAGAATTGTTCAAAATATTCGGCCAGGTCGTCAAACTGTTTTGTTTTCAGCCACTTTCCCTCGCCAGGTTGAAGTCTTGGCGCGTAAAGTGTTGGACAAACCTGTGGAAATACAGGTTGGTGGCAGGAGTGTTGTGAATAAGGACATAATGCAAATGGTTGAAATGAGGCAGGAAAATGAAAGATTCCTGAGATTGTTAGAGTTGCTCGGTGAATGGAATGAGAAAGGTAAGATTTTGATATTTGTCCAGTCCCAGGACAAATGTGATGCTTTGTTCCGGGATCTGCTTAGGCATGGATATGCTTGTCTCTCACTTCATGGGGCCAAAGATCAAACTGATCGTGAGTCCACAATATCTGATTTTAAGAGTGATGTTTGTAATTTGTTGATTGCAACAAGTGTTGCTGCCAGAGGATTAGATGTCAAGGAGCTTGAACTGGTGATCAACTTTCATGTCCCAAATCATTACGAGGACTATGTACACCGTGTTGGACGTACAGGCCGAGCTGGCCGGAAAGGATGTGCTATAACGTTTATCTCTGAGGAAGATGCTAGATATGCTCCAGATCTTGTTAAAGCATTGGAACTTTCTGAGCAAGTTGTTCCGGATGACCTGAAATCTCTTGCTGATAATTTCATGGCAAAAGTAACTCAGGGACTCGAGCAAGCCCATGGAACTGGTTATGGAGGAAGTGGTTTTAAATTTAATGAGGAGGAAGATGAAGTCAGGAGAGCGGCAAAGAAAGCTCAGGCTAAAGAATATGGTTTTGAGGATGACAAGTCTGATTCAGAAGATGAAGATGAAGGTATCCGAAAGGCAGGGGGCGACATCTCTCAGCAGGCTGCCCTTGCTCAGATAGCAGCTATTACTGCTGCCTCCAAAGCTAGTACAGCCTCAATGCAGACCCCTGCCTCTGCTACCCAACTGCTTCCCAACGGTGGACTGTCTGTTTCTCTTCCAGGTGTCCTTGGTCAAGCATTATCAGGAACAGCATCAGTTTTCACTGGGACTGGTTTGCCTCTTGCTAGCAATGATGGGGCAGCTCGGGCTGCTGCGATTGCTGCAGCCATGAACTTGCAGCATAACCTGGCAAAGATTCAAGCTGATGCAATGCCTGAACATTATGAAGCAGAGTTGGAGATAAATGATTTTCCTCAGAATGCTAGATGGAAGGTTACCCATAAGGAAACATGGGGTGCCATATCAGATTGGACTGGAGCGGCCATCACCACCAGGGGTCAGTATTTCCCACCTGGGAAGGTTGCAGGACCTGGAGATCGCAAGCTCTACTTGTTTATCGAGGGCCCTACTGAACAGTCTGTCAAGAGAGCTAAATCAGAGTTAAAGCGGGTTCTGGAAGACATCTCAAATCATGCATTCTCACTTCCTGGTGGAGCTCAGCAAGGCAGATATCAAGTTATATAA

Protein Analysis

1134

Amino Acids

128.7

Weight (kDa)

5.78

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 513 - 684 1.2e-48 DEAD/DEAH box helicase
Helicase_C PF00271 723 - 830 1.6e-28 Helicase conserved C-terminal domain
KH_12 PF23469 1036 - 1113 1.2e-14 KH-domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1697
AccB1I GGYRCC 2 cut(s) 1702, 3176
AccBSI CCGCTC 2 cut(s) 2714, 3200
AccII CGCG 3 cut(s) 69, 217, 2062
AccIII TCCGGA 1 cut(s) 2584
AciI CCGC 7 cut(s) 538, 1008, 1345, 1828, 2714, 3200, 3328
AclI AACGTT 1 cut(s) 2510
AclWI GGATC 7 cut(s) 72, 531, 1019, 1612, 1662, 1723, 2268
AcoI YGGCCR 3 cut(s) 2000, 2488, 3201
AcsI RAATTY 4 cut(s) 1045, 1351, 1494, 2681
AcuI CTGAAG 2 cut(s) 186, 1083
AfaI GTAC 7 cut(s) 220, 563, 895, 1761, 2460, 2476, 2869
AfiI CCNNNNNNNGG 8 cut(s) 61, 679, 1215, 1787, 1860, 2044, 2233, 2918
AjuI GAANNNNNNNTTGG 2 cut(s) 2079, 2111
Alw21I GWGCWC 2 cut(s) 133, 3379
Alw26I GTCTC 8 cut(s) 114, 189, 354, 563, 1013, 1572, 1772, 2291
AlwI GGATC 7 cut(s) 72, 531, 1019, 1612, 1662, 1723, 2268
AlwNI CAGNNNCTG 1 cut(s) 3251
Ama87I CYCGRG 3 cut(s) 222, 2639, 3024
Aor13HI TCCGGA 1 cut(s) 2584
AoxI GGCC 7 cut(s) 1682, 2000, 2301, 2479, 2488, 3201, 3283
ApaI GGGCCC 1 cut(s) 3287
ApoI RAATTY 4 cut(s) 1045, 1351, 1494, 2681
ArsI GACNNNNNNTTYG 2 cut(s) 1946, 1978
Asp700I GAANNNNTTC 2 cut(s) 864, 1719
AspLEI GCGC 2 cut(s) 217, 2062
AspS9I GGNCC 6 cut(s) 1219, 1682, 2301, 3248, 3283, 3284
AsuC2I CCSGG 2 cut(s) 578, 2258
AsuHPI GGTGA 8 cut(s) 44, 421, 1154, 1291, 1378, 2201, 2431, 3199
AsuNHI GCTAGC 2 cut(s) 1004, 3005
AvaI CYCGRG 3 cut(s) 222, 2639, 3024
AvaII GGWCC 2 cut(s) 1219, 3248
AxyI CCTNAGG 1 cut(s) 874
BaeGI GKGCMC 1 cut(s) 3287
BanI GGYRCC 2 cut(s) 1702, 3176
BanII GRGCYC 3 cut(s) 632, 3287, 3379
BbsI GAAGAC 1 cut(s) 3345
Bbv12I GWGCWC 2 cut(s) 133, 3379
BbvCI CCTCAGC 1 cut(s) 1640
BccI CCATC 8 cut(s) 611, 712, 929, 1121, 1673, 3008, 3141, 3212
BcgI CGANNNNNNTGC 2 cut(s) 953, 987
BciVI GTATCC 1 cut(s) 2798
BclI TGATCA 3 cut(s) 511, 1315, 2421
BcnI CCSGG 2 cut(s) 578, 2258
BcoDI GTCTC 8 cut(s) 114, 189, 354, 563, 1013, 1572, 1772, 2291
BfaI CTAG 6 cut(s) 1005, 1980, 2532, 2865, 3006, 3144
BfmI CTRYAG 3 cut(s) 1086, 1560, 3042
BfuI GTATCC 1 cut(s) 2798
BglI GCCNNNNNGGC 2 cut(s) 1690, 2487
BglII AGATCT 2 cut(s) 1374, 2545
BlpI GCTNAGC 1 cut(s) 3378
Bme18I GGWCC 2 cut(s) 1219, 3248
BmeT110I CYCGRG 3 cut(s) 222, 2639, 3024
BmgT120I GGNCC 6 cut(s) 1219, 1682, 2301, 3248, 3283, 3284
BmiI GGNNCC 5 cut(s) 1220, 1704, 2302, 3178, 3285
BmrI ACTGGG 2 cut(s) 1772, 2994
BmtI GCTAGC 2 cut(s) 1008, 3009
BmuI ACTGGG 2 cut(s) 1772, 2994
BpiI GAAGAC 1 cut(s) 3345
BpmI CTGGAG 4 cut(s) 1695, 2526, 3216, 3273
Bpu10I CCTNAGC 4 cut(s) 1548, 1640, 2267, 2727
Bpu1102I GCTNAGC 1 cut(s) 3378
BpuEI CTTGAG 2 cut(s) 1244, 1363
BpuMI CCSGG 2 cut(s) 578, 2258
BsaBI GATNNNNATC 2 cut(s) 63, 447
BsaI GGTCTC 2 cut(s) 114, 1772
BsaJI CCNNGG 9 cut(s) 124, 1190, 1755, 1855, 2232, 2650, 2947, 3213, 3233
BsaWI WCCGGW 1 cut(s) 2584
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bsc4I CCNNNNNNNGG 8 cut(s) 61, 679, 1215, 1787, 1860, 2044, 2233, 2918
Bse21I CCTNAGG 1 cut(s) 874
Bse3DI GCAATG 2 cut(s) 3016, 3096
Bse8I GATNNNNATC 2 cut(s) 63, 447
BseAI TCCGGA 1 cut(s) 2584
BseDI CCNNGG 9 cut(s) 124, 1190, 1755, 1855, 2232, 2650, 2947, 3213, 3233
BseJI GATNNNNATC 2 cut(s) 63, 447
BseLI CCNNNNNNNGG 8 cut(s) 61, 679, 1215, 1787, 1860, 2044, 2233, 2918
BseMI GCAATG 2 cut(s) 3016, 3096
BseRI GAGGAG 9 cut(s) 61, 472, 692, 695, 728, 748, 1031, 1168, 2705
BseSI GKGCMC 1 cut(s) 3287
BseYI CCCAGC 1 cut(s) 1075
BsgI GTGCAG 1 cut(s) 957
Bsh1236I CGCG 3 cut(s) 69, 217, 2062
BshFI GGCC 7 cut(s) 1684, 2002, 2303, 2481, 2490, 3203, 3285
BshNI GGYRCC 2 cut(s) 1702, 3176
BsiHKAI GWGCWC 2 cut(s) 133, 3379
BsiHKCI CYCGRG 3 cut(s) 222, 2639, 3024
BsiSI CCGG 5 cut(s) 577, 1411, 2257, 2491, 2585
BslFI GGGAC 6 cut(s) 892, 1232, 2215, 2420, 2649, 3001
BslI CCNNNNNNNGG 8 cut(s) 61, 679, 1215, 1787, 1860, 2044, 2233, 2918
BsmAI GTCTC 8 cut(s) 114, 189, 354, 563, 1013, 1572, 1772, 2291
BsmFI GGGAC 6 cut(s) 892, 1232, 2215, 2420, 2649, 3001
BsmI GAATGC 2 cut(s) 3145, 3356
BsnI GGCC 7 cut(s) 1684, 2002, 2303, 2481, 2490, 3203, 3285
Bso31I GGTCTC 2 cut(s) 114, 1772
BsoBI CYCGRG 3 cut(s) 222, 2639, 3024
Bsp120I GGGCCC 1 cut(s) 3283
Bsp1286I GDGCHC 4 cut(s) 133, 632, 3287, 3379
Bsp13I TCCGGA 1 cut(s) 2584
Bsp1407I TGTACA 1 cut(s) 2458
Bsp1720I GCTNAGC 1 cut(s) 3378
Bsp19I CCATGG 1 cut(s) 2650
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 7 cut(s) 538, 1008, 1345, 1828, 2714, 3200, 3328
BspANI GGCC 7 cut(s) 1684, 2002, 2303, 2481, 2490, 3203, 3285
BspEI TCCGGA 1 cut(s) 2584
BspFNI CGCG 3 cut(s) 69, 217, 2062
BspLI GGNNCC 5 cut(s) 1220, 1704, 2302, 3178, 3285
BspMAI CTGCAG 2 cut(s) 1090, 3046
BspOI GCTAGC 2 cut(s) 1008, 3009
BspPI GGATC 7 cut(s) 72, 531, 1019, 1612, 1662, 1723, 2268
BspT107I GGYRCC 2 cut(s) 1702, 3176
BspTNI GGTCTC 2 cut(s) 114, 1772
BsrBI CCGCTC 2 cut(s) 2714, 3200
BsrDI GCAATG 2 cut(s) 3016, 3096
BsrGI TGTACA 1 cut(s) 2458
BssECI CCNNGG 9 cut(s) 124, 1190, 1755, 1855, 2232, 2650, 2947, 3213, 3233
BssT1I CCWWGG 3 cut(s) 1755, 2650, 2947
Bst4CI ACNGT 8 cut(s) 125, 206, 1439, 2017, 2465, 2918, 2925, 3297
Bst6I CTCTTC 7 cut(s) 146, 251, 314, 373, 413, 1389, 2940
BstAUI TGTACA 1 cut(s) 2458
BstC8I GCNNGC 7 cut(s) 1006, 1408, 2488, 2646, 2820, 3007, 3263
BstDSI CCRYGG 2 cut(s) 124, 2650
BstEII GGTNACC 1 cut(s) 3154
BstFNI CGCG 3 cut(s) 69, 217, 2062
BstHHI GCGC 2 cut(s) 217, 2062
BstMAI GTCTC 8 cut(s) 114, 189, 354, 563, 1013, 1572, 1772, 2291
BstNSI RCATGY 2 cut(s) 806, 1410
BstPI GGTNACC 1 cut(s) 3154
BstSFI CTRYAG 3 cut(s) 1086, 1560, 3042
BstSLI GKGCMC 1 cut(s) 3287
BstUI CGCG 3 cut(s) 69, 217, 2062
BstV2I GAAGAC 1 cut(s) 3345
BstX2I RGATCY 4 cut(s) 1374, 1728, 2260, 2545
BstXI CCANNNNNNTGG 2 cut(s) 1762, 2657
BstYI RGATCY 4 cut(s) 1374, 1728, 2260, 2545
Bsu36I CCTNAGG 1 cut(s) 874
BsuI GTATCC 1 cut(s) 2798
BsuRI GGCC 7 cut(s) 1684, 2002, 2303, 2481, 2490, 3203, 3285
BtgI CCRYGG 2 cut(s) 124, 2650
BtsI GCAGTG 1 cut(s) 1087
BtsIMutI CAGTG 3 cut(s) 211, 1087, 2982
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 7 cut(s) 1006, 1408, 2488, 2646, 2820, 3007, 3263
CaiI CAGNNNCTG 1 cut(s) 3251
CfoI GCGC 2 cut(s) 217, 2062
Cfr13I GGNCC 6 cut(s) 1219, 1682, 2301, 3248, 3283, 3284
Csp6I GTAC 7 cut(s) 219, 562, 894, 1760, 2459, 2475, 2868
CviQI GTAC 7 cut(s) 219, 562, 894, 1760, 2459, 2475, 2868
DraI TTTAAA 1 cut(s) 2680
EaeI YGGCCR 3 cut(s) 2000, 2488, 3201
Eam1104I CTCTTC 7 cut(s) 146, 251, 314, 373, 413, 1389, 2940
EarI CTCTTC 7 cut(s) 146, 251, 314, 373, 413, 1389, 2940
Ecl136II GAGCTC 1 cut(s) 3377
Eco130I CCWWGG 3 cut(s) 1755, 2650, 2947
Eco24I GRGCYC 3 cut(s) 632, 3287, 3379
Eco31I GGTCTC 2 cut(s) 114, 1772
Eco32I GATATC 1 cut(s) 3392
Eco47I GGWCC 2 cut(s) 1219, 3248
Eco53kI GAGCTC 1 cut(s) 3377
Eco57I CTGAAG 2 cut(s) 186, 1083
Eco81I CCTNAGG 1 cut(s) 874
Eco88I CYCGRG 3 cut(s) 222, 2639, 3024
Eco91I GGTNACC 1 cut(s) 3154
EcoICRI GAGCTC 1 cut(s) 3377
EcoO109I RGGNCCY 4 cut(s) 1219, 3248, 3283, 3284
EcoO65I GGTNACC 1 cut(s) 3154
EcoRI GAATTC 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 3392
EcoT14I CCWWGG 3 cut(s) 1755, 2650, 2947
EcoT22I ATGCAT 2 cut(s) 1096, 3358
EcoT38I GRGCYC 3 cut(s) 632, 3287, 3379
ErhI CCWWGG 3 cut(s) 1755, 2650, 2947
FalI AAGNNNNNCTT 4 cut(s) 903, 935, 3254, 3286
FaqI GGGAC 6 cut(s) 892, 1232, 2215, 2420, 2649, 3001
FauI CCCGC 3 cut(s) 1001, 1821, 3321
FauNDI CATATG 1 cut(s) 609
FbaI TGATCA 3 cut(s) 511, 1315, 2421
FriOI GRGCYC 3 cut(s) 632, 3287, 3379
FspBI CTAG 6 cut(s) 1005, 1980, 2532, 2865, 3006, 3144
GlaI GCGC 2 cut(s) 216, 2061
GsaI CCCAGC 1 cut(s) 1079
GsuI CTGGAG 4 cut(s) 1695, 2526, 3216, 3273
HaeIII GGCC 7 cut(s) 1684, 2002, 2303, 2481, 2490, 3203, 3285
HapII CCGG 5 cut(s) 577, 1411, 2257, 2491, 2585
HhaI GCGC 2 cut(s) 217, 2062
Hin6I GCGC 2 cut(s) 215, 2060
HinP1I GCGC 2 cut(s) 215, 2060
HpaII CCGG 5 cut(s) 577, 1411, 2257, 2491, 2585
HphI GGTGA 8 cut(s) 44, 421, 1154, 1291, 1378, 2201, 2431, 3199
Hpy166II GTNNAC 4 cut(s) 1145, 2328, 2461, 2921
Hpy8I GTNNAC 4 cut(s) 1145, 2328, 2461, 2921
Hpy99I CGWCG 2 cut(s) 138, 1265
HpyCH4III ACNGT 8 cut(s) 125, 206, 1439, 2017, 2465, 2918, 2925, 3297
HpyCH4IV ACGT 4 cut(s) 136, 727, 2473, 2510
HpySE526I ACGT 4 cut(s) 136, 727, 2473, 2510
HspAI GCGC 2 cut(s) 215, 2060
Kpn2I TCCGGA 1 cut(s) 2584
Ksp22I TGATCA 3 cut(s) 511, 1315, 2421
LmnI GCTCC 6 cut(s) 424, 992, 2407, 2545, 3197, 3374
MaeI CTAG 6 cut(s) 1005, 1980, 2532, 2865, 3006, 3144
MaeII ACGT 4 cut(s) 136, 727, 2473, 2510
MaeIII GTNAC 4 cut(s) 50, 1915, 2626, 3154
MbiI CCGCTC 2 cut(s) 2714, 3200
MfeI CAATTG 1 cut(s) 1418
MflI RGATCY 4 cut(s) 1374, 1728, 2260, 2545
MhlI GDGCHC 4 cut(s) 133, 632, 3287, 3379
MlyI GAGTC 5 cut(s) 58, 829, 1396, 2333, 2631
MmeI TCCRAC 3 cut(s) 2052, 2449, 3096
Mph1103I ATGCAT 2 cut(s) 1096, 3358
MroI TCCGGA 1 cut(s) 2584
MroXI GAANNNNTTC 2 cut(s) 864, 1719
MslI CAYNNNNRTG 5 cut(s) 486, 546, 612, 807, 2277
MspA1I CMGCKG 1 cut(s) 971
MspI CCGG 5 cut(s) 577, 1411, 2257, 2491, 2585
MunI CAATTG 1 cut(s) 1418
Mva1269I GAATGC 2 cut(s) 3145, 3356
MvnI CGCG 3 cut(s) 69, 217, 2062
NciI CCSGG 2 cut(s) 578, 2258
NcoI CCATGG 1 cut(s) 2650
NdeI CATATG 1 cut(s) 609
NheI GCTAGC 2 cut(s) 1004, 3005
NlaIV GGNNCC 5 cut(s) 1220, 1704, 2302, 3178, 3285
NmeAIII GCCGAG 1 cut(s) 2507
NmuCI GTSAC 1 cut(s) 50
NruI TCGCGA 1 cut(s) 69
NsiI ATGCAT 2 cut(s) 1096, 3358
NspI RCATGY 2 cut(s) 806, 1410
PaeI GCATGC 1 cut(s) 1410
PaeR7I CTCGAG 1 cut(s) 2639
PcsI WCGNNNNNNNCGW 2 cut(s) 2005, 2479
PctI GAATGC 2 cut(s) 3145, 3356
PdmI GAANNNNTTC 2 cut(s) 864, 1719
PfoI TCCNGGA 1 cut(s) 2256
PleI GAGTC 5 cut(s) 57, 829, 1395, 2332, 2631
PpsI GAGTC 5 cut(s) 57, 829, 1395, 2332, 2631
PpuMI RGGWCCY 2 cut(s) 1219, 3248
PsiI TTATAA 1 cut(s) 1697
Psp124BI GAGCTC 1 cut(s) 3379
Psp1406I AACGTT 1 cut(s) 2510
Psp5II RGGWCCY 2 cut(s) 1219, 3248
PspEI GGTNACC 1 cut(s) 3154
PspFI CCCAGC 1 cut(s) 1075
PspN4I GGNNCC 5 cut(s) 1220, 1704, 2302, 3178, 3285
PspOMI GGGCCC 1 cut(s) 3283
PspPI GGNCC 6 cut(s) 1219, 1682, 2301, 3248, 3283, 3284
PspPPI RGGWCCY 2 cut(s) 1219, 3248
PspXI VCTCGAGB 1 cut(s) 2639
PstI CTGCAG 2 cut(s) 1090, 3046
PstNI CAGNNNCTG 1 cut(s) 3251
PsuI RGATCY 4 cut(s) 1374, 1728, 2260, 2545
PvuII CAGCTG 1 cut(s) 971
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 7 cut(s) 220, 563, 895, 1761, 2460, 2476, 2869
RsaNI GTAC 7 cut(s) 219, 562, 894, 1760, 2459, 2475, 2868
RseI CAYNNNNRTG 5 cut(s) 486, 546, 612, 807, 2277
SacI GAGCTC 1 cut(s) 3379
Sau96I GGNCC 6 cut(s) 1219, 1682, 2301, 3248, 3283, 3284
SchI GAGTC 5 cut(s) 58, 829, 1396, 2333, 2631
SduI GDGCHC 4 cut(s) 133, 632, 3287, 3379
SfcI CTRYAG 3 cut(s) 1086, 1560, 3042
SfiI GGCCNNNNNGGCC 1 cut(s) 2487
Sfr274I CTCGAG 1 cut(s) 2639
SinI GGWCC 2 cut(s) 1219, 3248
SlaI CTCGAG 1 cut(s) 2639
SmiMI CAYNNNNRTG 5 cut(s) 486, 546, 612, 807, 2277
SmlI CTYRAG 3 cut(s) 1223, 1378, 2639
SmoI CTYRAG 3 cut(s) 1223, 1378, 2639
SphI GCATGC 1 cut(s) 1410
SsiI CCGC 7 cut(s) 538, 1008, 1345, 1828, 2714, 3200, 3328
SspI AATATT 1 cut(s) 1996
SspMI CTAG 6 cut(s) 1005, 1980, 2532, 2865, 3006, 3144
SstI GAGCTC 1 cut(s) 3379
StyI CCWWGG 3 cut(s) 1755, 2650, 2947
TaaI ACNGT 8 cut(s) 125, 206, 1439, 2017, 2465, 2918, 2925, 3297
TaiI ACGT 4 cut(s) 139, 730, 2476, 2513
TaqI TCGA 9 cut(s) 23, 133, 193, 451, 1132, 1576, 1945, 2640, 3279
TatI WGTACW 3 cut(s) 561, 2458, 2867
TauI GCSGC 3 cut(s) 541, 2717, 3203
TscAI CASTG 3 cut(s) 211, 1087, 2989
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 1017
TspRI CASTG 3 cut(s) 211, 1087, 2989
VpaK11BI GGWCC 2 cut(s) 1219, 3248
XapI RAATTY 4 cut(s) 1045, 1351, 1494, 2681
XceI RCATGY 2 cut(s) 806, 1410
XcmI CCANNNNNNNNNTGG 1 cut(s) 1495
XhoI CTCGAG 1 cut(s) 2639
XmnI GAANNNNTTC 2 cut(s) 864, 1719
XspI CTAG 6 cut(s) 1005, 1980, 2532, 2865, 3006, 3144
Zsp2I ATGCAT 2 cut(s) 1096, 3358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.