DEAD-box ATP-dependent RNA helicase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1118, 2005 |
| AccB1I | GGYRCC | 2 cut(s) | 1440, 1672 |
| AccBSI | CCGCTC | 2 cut(s) | 334, 2684 |
| AccI | GTMKAC | 1 cut(s) | 1755 |
| AciI | CCGC | 7 cut(s) | 334, 523, 721, 1798, 2070, 2684, 3011 |
| AclI | AACGTT | 1 cut(s) | 3140 |
| AclWI | GGATC | 6 cut(s) | 72, 78, 986, 1202, 1582, 3040 |
| AcoI | YGGCCR | 2 cut(s) | 2449, 2458 |
| AcsI | RAATTY | 4 cut(s) | 1321, 2181, 2395, 2651 |
| AcuI | CTGAAG | 1 cut(s) | 1814 |
| AcyI | GRCGYC | 2 cut(s) | 1358, 2910 |
| AfaI | GTAC | 6 cut(s) | 182, 548, 1599, 1822, 2196, 2446 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 673, 1757, 2014, 2885, 2912, 2960, 2975, 3221 |
| AflII | CTTAAG | 1 cut(s) | 2237 |
| AgsI | TTSAA | 9 cut(s) | 635, 1134, 1399, 1514, 1937, 1961, 2021, 2384, 2566 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 814, 2894 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1144, 1176, 2049, 2081 |
| Alw26I | GTCTC | 5 cut(s) | 869, 1542, 1742, 2261, 2491 |
| AlwI | GGATC | 6 cut(s) | 72, 78, 986, 1202, 1582, 3040 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 971, 1525 |
| Ama87I | CYCGRG | 1 cut(s) | 2994 |
| AoxI | GGCC | 7 cut(s) | 1652, 2271, 2449, 2458, 2700, 3145, 3253 |
| ApaI | GGGCCC | 2 cut(s) | 3149, 3257 |
| ApoI | RAATTY | 4 cut(s) | 1321, 2181, 2395, 2651 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 1916, 1948, 1954, 1986, 3255, 3287 |
| AseI | ATTAAT | 1 cut(s) | 957 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2757 |
| AspS9I | GGNCC | 9 cut(s) | 1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254 |
| AsuHPI | GGTGA | 7 cut(s) | 1033, 1124, 1261, 1348, 2401, 2423, 2786 |
| AsuII | TTCGAA | 1 cut(s) | 2761 |
| AvaI | CYCGRG | 1 cut(s) | 2994 |
| AvaII | GGWCC | 3 cut(s) | 1189, 1624, 3218 |
| BaeGI | GKGCMC | 2 cut(s) | 3149, 3257 |
| BanI | GGYRCC | 2 cut(s) | 1440, 1672 |
| BanII | GRGCYC | 3 cut(s) | 617, 3149, 3257 |
| BbsI | GAAGAC | 1 cut(s) | 2730 |
| BbvCI | CCTCAGC | 2 cut(s) | 1121, 1610 |
| BccI | CCATC | 7 cut(s) | 596, 833, 917, 950, 1643, 2978, 3111 |
| BceAI | ACGGC | 1 cut(s) | 2436 |
| BcoDI | GTCTC | 5 cut(s) | 869, 1542, 1742, 2261, 2491 |
| BfaI | CTAG | 4 cut(s) | 24, 2366, 2502, 3114 |
| BfmI | CTRYAG | 3 cut(s) | 972, 2838, 3000 |
| BfrI | CTTAAG | 1 cut(s) | 2237 |
| BfuAI | ACCTGC | 2 cut(s) | 1118, 2005 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 1660, 2457, 2466 |
| BglII | AGATCT | 4 cut(s) | 1344, 2230, 2515, 3312 |
| Bme18I | GGWCC | 3 cut(s) | 1189, 1624, 3218 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 814, 2894 |
| BmeT110I | CYCGRG | 1 cut(s) | 2994 |
| BmgT120I | GGNCC | 9 cut(s) | 1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254 |
| BmiI | GGNNCC | 9 cut(s) | 1059, 1190, 1442, 1674, 2272, 2853, 3147, 3213, 3255 |
| BmsI | GCATC | 6 cut(s) | 205, 928, 1014, 2206, 2488, 3046 |
| BpiI | GAAGAC | 1 cut(s) | 2730 |
| BpmI | CTGGAG | 3 cut(s) | 2496, 3186, 3360 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1121, 1518, 1610 |
| Bpu14I | TTCGAA | 1 cut(s) | 2761 |
| BpuEI | CTTGAG | 3 cut(s) | 1214, 1333, 2158 |
| BsaAI | YACGTR | 1 cut(s) | 184 |
| BsaBI | GATNNNNATC | 3 cut(s) | 63, 69, 1206 |
| BsaHI | GRCGYC | 2 cut(s) | 1358, 2910 |
| BsaI | GGTCTC | 1 cut(s) | 1742 |
| BsaJI | CCNNGG | 9 cut(s) | 1160, 1680, 1725, 2009, 2620, 2954, 3183, 3203, 3337 |
| BsaWI | WCCGGW | 1 cut(s) | 1380 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 562, 592, 918, 948 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 673, 1757, 2014, 2885, 2912, 2960, 2975, 3221 |
| Bse1I | ACTGG | 8 cut(s) | 1453, 1576, 2346, 2391, 2452, 2632, 2965, 3169 |
| Bse3DI | GCAATG | 3 cut(s) | 2326, 2850, 3066 |
| Bse8I | GATNNNNATC | 3 cut(s) | 63, 69, 1206 |
| BseDI | CCNNGG | 9 cut(s) | 1160, 1680, 1725, 2009, 2620, 2954, 3183, 3203, 3337 |
| BseJI | GATNNNNATC | 3 cut(s) | 63, 69, 1206 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 673, 1757, 2014, 2885, 2912, 2960, 2975, 3221 |
| BseMI | GCAATG | 3 cut(s) | 2326, 2850, 3066 |
| BseNI | ACTGG | 8 cut(s) | 1453, 1576, 2346, 2391, 2452, 2632, 2965, 3169 |
| BseRI | GAGGAG | 9 cut(s) | 61, 132, 188, 457, 640, 686, 689, 739, 742 |
| BseSI | GKGCMC | 2 cut(s) | 3149, 3257 |
| BseYI | CCCAGC | 1 cut(s) | 1643 |
| BshFI | GGCC | 7 cut(s) | 1654, 2273, 2451, 2460, 2702, 3147, 3255 |
| BshNI | GGYRCC | 2 cut(s) | 1440, 1672 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2994 |
| BsiSI | CCGG | 2 cut(s) | 1381, 2461 |
| BslFI | GGGAC | 6 cut(s) | 299, 1202, 2390, 2619, 2638, 2971 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 673, 1757, 2014, 2885, 2912, 2960, 2975, 3221 |
| BsmAI | GTCTC | 5 cut(s) | 869, 1542, 1742, 2261, 2491 |
| BsmFI | GGGAC | 6 cut(s) | 299, 1202, 2390, 2619, 2638, 2971 |
| BsmI | GAATGC | 1 cut(s) | 3115 |
| BsnI | GGCC | 7 cut(s) | 1654, 2273, 2451, 2460, 2702, 3147, 3255 |
| Bso31I | GGTCTC | 1 cut(s) | 1742 |
| BsoBI | CYCGRG | 1 cut(s) | 2994 |
| Bsp119I | TTCGAA | 1 cut(s) | 2761 |
| Bsp120I | GGGCCC | 2 cut(s) | 3145, 3253 |
| Bsp1286I | GDGCHC | 3 cut(s) | 617, 3149, 3257 |
| Bsp1407I | TGTACA | 1 cut(s) | 2194 |
| Bsp19I | CCATGG | 1 cut(s) | 2620 |
| BspACI | CCGC | 7 cut(s) | 334, 523, 721, 1798, 2070, 2684, 3011 |
| BspANI | GGCC | 7 cut(s) | 1654, 2273, 2451, 2460, 2702, 3147, 3255 |
| BspLI | GGNNCC | 9 cut(s) | 1059, 1190, 1442, 1674, 2272, 2853, 3147, 3213, 3255 |
| BspMAI | CTGCAG | 2 cut(s) | 976, 3004 |
| BspMI | ACCTGC | 2 cut(s) | 1118, 2005 |
| BspPI | GGATC | 6 cut(s) | 72, 78, 986, 1202, 1582, 3040 |
| BspQI | GCTCTTC | 1 cut(s) | 2907 |
| BspT104I | TTCGAA | 1 cut(s) | 2761 |
| BspT107I | GGYRCC | 2 cut(s) | 1440, 1672 |
| BspTI | CTTAAG | 1 cut(s) | 2237 |
| BspTNI | GGTCTC | 1 cut(s) | 1742 |
| BsrBI | CCGCTC | 2 cut(s) | 334, 2684 |
| BsrDI | GCAATG | 3 cut(s) | 2326, 2850, 3066 |
| BsrGI | TGTACA | 1 cut(s) | 2194 |
| BsrI | ACTGG | 8 cut(s) | 1453, 1576, 2346, 2391, 2452, 2632, 2965, 3169 |
| BssECI | CCNNGG | 9 cut(s) | 1160, 1680, 1725, 2009, 2620, 2954, 3183, 3203, 3337 |
| BssNAI | GTATAC | 1 cut(s) | 1756 |
| BssNI | GRCGYC | 2 cut(s) | 1358, 2910 |
| BssT1I | CCWWGG | 3 cut(s) | 1160, 1725, 2620 |
| Bst1107I | GTATAC | 1 cut(s) | 1756 |
| Bst4CI | ACNGT | 6 cut(s) | 1054, 1706, 1987, 2435, 2885, 3267 |
| Bst6I | CTCTTC | 6 cut(s) | 320, 387, 404, 527, 2907, 3303 |
| BstACI | GRCGYC | 2 cut(s) | 1358, 2910 |
| BstAFI | CTTAAG | 1 cut(s) | 2237 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3008 |
| BstAUI | TGTACA | 1 cut(s) | 2194 |
| BstBAI | YACGTR | 1 cut(s) | 184 |
| BstBI | TTCGAA | 1 cut(s) | 2761 |
| BstC8I | GCNNGC | 6 cut(s) | 865, 1439, 2458, 2790, 2850, 3233 |
| BstDSI | CCRYGG | 1 cut(s) | 2620 |
| BstMAI | GTCTC | 5 cut(s) | 869, 1542, 1742, 2261, 2491 |
| BstSFI | CTRYAG | 3 cut(s) | 972, 2838, 3000 |
| BstSLI | GKGCMC | 2 cut(s) | 3149, 3257 |
| BstV2I | GAAGAC | 1 cut(s) | 2730 |
| BstX2I | RGATCY | 5 cut(s) | 1344, 2230, 2515, 3045, 3312 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1732, 2627 |
| BstYI | RGATCY | 5 cut(s) | 1344, 2230, 2515, 3045, 3312 |
| BstZ17I | GTATAC | 1 cut(s) | 1756 |
| BsuRI | GGCC | 7 cut(s) | 1654, 2273, 2451, 2460, 2702, 3147, 3255 |
| BtgI | CCRYGG | 1 cut(s) | 2620 |
| BtsI | GCAGTG | 2 cut(s) | 1523, 2986 |
| BtsIMutI | CAGTG | 4 cut(s) | 1523, 1711, 2353, 2986 |
| BveI | ACCTGC | 2 cut(s) | 1118, 2005 |
| Cac8I | GCNNGC | 6 cut(s) | 865, 1439, 2458, 2790, 2850, 3233 |
| CaiI | CAGNNNCTG | 2 cut(s) | 971, 1525 |
| Cfr13I | GGNCC | 9 cut(s) | 1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254 |
| CseI | GACGC | 2 cut(s) | 1366, 2899 |
| Csp6I | GTAC | 6 cut(s) | 181, 547, 1598, 1821, 2195, 2445 |
| CviQI | GTAC | 6 cut(s) | 181, 547, 1598, 1821, 2195, 2445 |
| DraI | TTTAAA | 1 cut(s) | 2650 |
| DriI | GACNNNNNGTC | 2 cut(s) | 814, 2894 |
| EaeI | YGGCCR | 2 cut(s) | 2449, 2458 |
| Eam1104I | CTCTTC | 6 cut(s) | 320, 387, 404, 527, 2907, 3303 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 814, 2894 |
| EarI | CTCTTC | 6 cut(s) | 320, 387, 404, 527, 2907, 3303 |
| EciI | GGCGGA | 1 cut(s) | 2085 |
| Eco130I | CCWWGG | 3 cut(s) | 1160, 1725, 2620 |
| Eco24I | GRGCYC | 3 cut(s) | 617, 3149, 3257 |
| Eco31I | GGTCTC | 1 cut(s) | 1742 |
| Eco32I | GATATC | 4 cut(s) | 1711, 2249, 2779, 3362 |
| Eco47I | GGWCC | 3 cut(s) | 1189, 1624, 3218 |
| Eco57I | CTGAAG | 1 cut(s) | 1814 |
| Eco88I | CYCGRG | 1 cut(s) | 2994 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1189, 3146, 3253, 3254 |
| EcoRV | GATATC | 4 cut(s) | 1711, 2249, 2779, 3362 |
| EcoT14I | CCWWGG | 3 cut(s) | 1160, 1725, 2620 |
| EcoT38I | GRGCYC | 3 cut(s) | 617, 3149, 3257 |
| ErhI | CCWWGG | 3 cut(s) | 1160, 1725, 2620 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 3224, 3256 |
| FaqI | GGGAC | 6 cut(s) | 299, 1202, 2390, 2619, 2638, 2971 |
| FauI | CCCGC | 1 cut(s) | 1791 |
| FblI | GTMKAC | 1 cut(s) | 1755 |
| FriOI | GRGCYC | 3 cut(s) | 617, 3149, 3257 |
| FspBI | CTAG | 4 cut(s) | 24, 2366, 2502, 3114 |
| GsaI | CCCAGC | 1 cut(s) | 1647 |
| GsuI | CTGGAG | 3 cut(s) | 2496, 3186, 3360 |
| HaeIII | GGCC | 7 cut(s) | 1654, 2273, 2451, 2460, 2702, 3147, 3255 |
| HapII | CCGG | 2 cut(s) | 1381, 2461 |
| HgaI | GACGC | 2 cut(s) | 1366, 2899 |
| Hin1I | GRCGYC | 2 cut(s) | 1358, 2910 |
| HincII | GTYRAC | 1 cut(s) | 1285 |
| HindII | GTYRAC | 1 cut(s) | 1285 |
| HindIII | AAGCTT | 1 cut(s) | 1002 |
| HpaII | CCGG | 2 cut(s) | 1381, 2461 |
| HphI | GGTGA | 7 cut(s) | 1033, 1124, 1261, 1348, 2401, 2423, 2786 |
| Hpy166II | GTNNAC | 7 cut(s) | 1285, 1756, 1790, 2298, 2431, 2888, 3162 |
| Hpy8I | GTNNAC | 7 cut(s) | 1285, 1756, 1790, 2298, 2431, 2888, 3162 |
| Hpy99I | CGWCG | 2 cut(s) | 144, 2915 |
| HpyCH4III | ACNGT | 6 cut(s) | 1054, 1706, 1987, 2435, 2885, 3267 |
| HpyCH4IV | ACGT | 5 cut(s) | 183, 376, 888, 2443, 3140 |
| HpySE526I | ACGT | 5 cut(s) | 183, 376, 888, 2443, 3140 |
| Hsp92I | GRCGYC | 2 cut(s) | 1358, 2910 |
| LguI | GCTCTTC | 1 cut(s) | 2907 |
| LmnI | GCTCC | 7 cut(s) | 331, 508, 1684, 2377, 2515, 2857, 3167 |
| LweI | GCATC | 6 cut(s) | 205, 928, 1014, 2206, 2488, 3046 |
| MaeI | CTAG | 4 cut(s) | 24, 2366, 2502, 3114 |
| MaeII | ACGT | 5 cut(s) | 183, 376, 888, 2443, 3140 |
| MaeIII | GTNAC | 4 cut(s) | 131, 1885, 2151, 3124 |
| MbiI | CCGCTC | 2 cut(s) | 334, 2684 |
| MfeI | CAATTG | 3 cut(s) | 1065, 1388, 2102 |
| MflI | RGATCY | 5 cut(s) | 1344, 2230, 2515, 3045, 3312 |
| MhlI | GDGCHC | 3 cut(s) | 617, 3149, 3257 |
| MlyI | GAGTC | 5 cut(s) | 58, 136, 826, 1169, 2303 |
| MmeI | TCCRAC | 3 cut(s) | 1543, 2419, 3066 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2757 |
| MseI | TTAA | 7 cut(s) | 752, 957, 2238, 2313, 2649, 2655, 3293 |
| MslI | CAYNNNNRTG | 4 cut(s) | 471, 597, 1535, 3054 |
| MspA1I | CMGCKG | 1 cut(s) | 968 |
| MspCI | CTTAAG | 1 cut(s) | 2237 |
| MspI | CCGG | 2 cut(s) | 1381, 2461 |
| MunI | CAATTG | 3 cut(s) | 1065, 1388, 2102 |
| Mva1269I | GAATGC | 1 cut(s) | 3115 |
| NcoI | CCATGG | 1 cut(s) | 2620 |
| NlaIV | GGNNCC | 9 cut(s) | 1059, 1190, 1442, 1674, 2272, 2853, 3147, 3213, 3255 |
| NmeAIII | GCCGAG | 1 cut(s) | 1990 |
| NmuCI | GTSAC | 1 cut(s) | 131 |
| NspV | TTCGAA | 1 cut(s) | 2761 |
| PciSI | GCTCTTC | 1 cut(s) | 2907 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 136, 148, 2449 |
| PctI | GAATGC | 1 cut(s) | 3115 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2757 |
| PfeI | GAWTC | 8 cut(s) | 167, 309, 488, 641, 845, 1169, 1699, 2735 |
| PfoI | TCCNGGA | 1 cut(s) | 3214 |
| PleI | GAGTC | 5 cut(s) | 57, 135, 826, 1169, 2302 |
| PpsI | GAGTC | 5 cut(s) | 57, 135, 826, 1169, 2302 |
| Ppu21I | YACGTR | 1 cut(s) | 184 |
| PpuMI | RGGWCCY | 1 cut(s) | 1189 |
| PshBI | ATTAAT | 1 cut(s) | 957 |
| Psp1406I | AACGTT | 1 cut(s) | 3140 |
| Psp5II | RGGWCCY | 1 cut(s) | 1189 |
| PspFI | CCCAGC | 1 cut(s) | 1643 |
| PspN4I | GGNNCC | 9 cut(s) | 1059, 1190, 1442, 1674, 2272, 2853, 3147, 3213, 3255 |
| PspOMI | GGGCCC | 2 cut(s) | 3145, 3253 |
| PspPI | GGNCC | 9 cut(s) | 1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254 |
| PspPPI | RGGWCCY | 1 cut(s) | 1189 |
| PstI | CTGCAG | 2 cut(s) | 976, 3004 |
| PstNI | CAGNNNCTG | 2 cut(s) | 971, 1525 |
| PsuI | RGATCY | 5 cut(s) | 1344, 2230, 2515, 3045, 3312 |
| PvuII | CAGCTG | 1 cut(s) | 968 |
| RsaI | GTAC | 6 cut(s) | 182, 548, 1599, 1822, 2196, 2446 |
| RsaNI | GTAC | 6 cut(s) | 181, 547, 1598, 1821, 2195, 2445 |
| RseI | CAYNNNNRTG | 4 cut(s) | 471, 597, 1535, 3054 |
| SapI | GCTCTTC | 1 cut(s) | 2907 |
| SaqAI | TTAA | 7 cut(s) | 752, 957, 2238, 2313, 2649, 2655, 3293 |
| Sau96I | GGNCC | 9 cut(s) | 1189, 1624, 1652, 2271, 3145, 3146, 3218, 3253, 3254 |
| SchI | GAGTC | 5 cut(s) | 58, 136, 826, 1169, 2303 |
| SduI | GDGCHC | 3 cut(s) | 617, 3149, 3257 |
| SfaNI | GCATC | 6 cut(s) | 205, 928, 1014, 2206, 2488, 3046 |
| SfcI | CTRYAG | 3 cut(s) | 972, 2838, 3000 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2457 |
| SfuI | TTCGAA | 1 cut(s) | 2761 |
| SinI | GGWCC | 3 cut(s) | 1189, 1624, 3218 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 471, 597, 1535, 3054 |
| SmlI | CTYRAG | 4 cut(s) | 1193, 1348, 2137, 2237 |
| SmoI | CTYRAG | 4 cut(s) | 1193, 1348, 2137, 2237 |
| SsiI | CCGC | 7 cut(s) | 334, 523, 721, 1798, 2070, 2684, 3011 |
| SspI | AATATT | 1 cut(s) | 1966 |
| SspMI | CTAG | 4 cut(s) | 24, 2366, 2502, 3114 |
| StyI | CCWWGG | 3 cut(s) | 1160, 1725, 2620 |
| TaaI | ACNGT | 6 cut(s) | 1054, 1706, 1987, 2435, 2885, 3267 |
| TaiI | ACGT | 5 cut(s) | 186, 379, 891, 2446, 3143 |
| TatI | WGTACW | 4 cut(s) | 546, 1597, 1820, 2194 |
| TauI | GCSGC | 3 cut(s) | 526, 2687, 3014 |
| TfiI | GAWTC | 8 cut(s) | 167, 309, 488, 641, 845, 1169, 1699, 2735 |
| Tru1I | TTAA | 7 cut(s) | 752, 957, 2238, 2313, 2649, 2655, 3293 |
| Tru9I | TTAA | 7 cut(s) | 752, 957, 2238, 2313, 2649, 2655, 3293 |
| TscAI | CASTG | 4 cut(s) | 1530, 1711, 2353, 2986 |
| TseFI | GTSAC | 1 cut(s) | 131 |
| Tsp45I | GTSAC | 1 cut(s) | 131 |
| TspGWI | ACGGA | 3 cut(s) | 709, 1304, 1773 |
| TspRI | CASTG | 4 cut(s) | 1530, 1711, 2353, 2986 |
| Vha464I | CTTAAG | 1 cut(s) | 2237 |
| VpaK11BI | GGWCC | 3 cut(s) | 1189, 1624, 3218 |
| VspI | ATTAAT | 1 cut(s) | 957 |
| XapI | RAATTY | 4 cut(s) | 1321, 2181, 2395, 2651 |
| XmiI | GTMKAC | 1 cut(s) | 1755 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2757 |
| XspI | CTAG | 4 cut(s) | 24, 2366, 2502, 3114 |