Rorug07G0165200

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
13238310 .. 13238492
183 bp
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UTR
Exon/CDS
Intron
Rorug07G0165200.1

Sequence Viewer

Length: 183 bp
ATGGCCCTCAACAAGTCAGAGTTAGATCTTGCTTTGGAAGGTGGTATATTTGAAGAAATTAAGCTTCTATTGTCAAAGTTTGAGTTCATTCCTTGGAGGGCAATACCTAGAGAATGCAATCACGTAGCTCATAAGGTAGCAAGGAAGGCTTTCAGTGGCAGGGGCATCATCTTTTGGAATTAG

Protein Analysis

60

Amino Acids

6.91

Weight (kDa)

9.03

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 2 cut(s) 64, 128
AluI AGCT 2 cut(s) 64, 128
AoxI GGCC 1 cut(s) 3
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 4
BfaI CTAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 4
BmsI GCATC 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 92
BshFI GGCC 1 cut(s) 5
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 25
BspANI GGCC 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 124
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 4
CviJI RGCY 4 cut(s) 5, 64, 128, 149
CviKI_1 RGCY 4 cut(s) 5, 64, 128, 149
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 92
ErhI CCWWGG 1 cut(s) 92
FaiI YATR 2 cut(s) 47, 132
FalI AAGNNNNNCTT 2 cut(s) 133, 165
FspBI CTAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 62
Hpy188I TCNGA 1 cut(s) 19
HpyAV CCTTC 2 cut(s) 32, 139
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 123
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 1 cut(s) 145
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 123
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 1 cut(s) 65
MflI RGATCY 1 cut(s) 25
MluCI AATT 2 cut(s) 57, 178
MnlI CCTC 2 cut(s) 17, 90
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 1 cut(s) 25
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 124
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 25
SaqAI TTAA 1 cut(s) 60
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 1 cut(s) 4
SetI ASST 6 cut(s) 43, 66, 109, 126, 130, 138
SfaNI GCATC 1 cut(s) 174
SgeI CNNG 7 cut(s) 25, 41, 105, 120, 134, 153, 172
Sse9I AATT 2 cut(s) 57, 178
SspMI CTAG 1 cut(s) 108
StyI CCWWGG 1 cut(s) 92
TaiI ACGT 1 cut(s) 126
TasI AATT 2 cut(s) 57, 178
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 76
TspRI CASTG 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.