Rorug07G0164800

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
13216599 .. 13217190
592 bp
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UTR
Exon/CDS
Intron
Rorug07G0164800.1

Sequence Viewer

Length: 234 bp
ATGCCGCTGACAAAAGAAGATCTTGTAGGCCATCTTGCCTCTGGATGCAAGCCTAAAGAGAAATGGAGAATTGGCGTGGAACATGAGAGGTTTGGCTTCAATTTAAAAAGTTTACGTCCCATGCAATATCAACAAATAGCTGAGCTGCTAAATGGGATTGCTGAGAGATTTAAGGGGGAGAAAATCATGGAAGGTGATAACATTATTGGACTCAAACAGGAAGTTCTTAGGTAG

Protein Analysis

77

Amino Acids

8.86

Weight (kDa)

8.85

Isoelectric Point (pI)

22.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 2 cut(s) 140, 145
AluI AGCT 2 cut(s) 140, 145
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 206
BbvI GCAGC 1 cut(s) 132
BccI CCATC 1 cut(s) 39
BglII AGATCT 1 cut(s) 19
BisI GCNGC 2 cut(s) 5, 146
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 2 cut(s) 6, 147
BmsI GCATC 1 cut(s) 35
Bpu1102I GCTNAGC 1 cut(s) 141
BseGI GGATG 1 cut(s) 50
BseMII CTCAG 2 cut(s) 132, 153
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 1 cut(s) 30
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 19
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 2 cut(s) 133, 154
BssMI GATC 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 3 cut(s) 141, 162, 227
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 50
CviAII CATG 3 cut(s) 83, 121, 187
CviJI RGCY 5 cut(s) 30, 52, 96, 140, 145
CviKI_1 RGCY 5 cut(s) 30, 52, 96, 140, 145
DdeI CTNAG 3 cut(s) 141, 162, 227
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
DraI TTTAAA 1 cut(s) 105
FaeI CATG 3 cut(s) 86, 124, 190
FaiI YATR 3 cut(s) 84, 122, 188
FalI AAGNNNNNCTT 1 cut(s) 38
FaqI GGGAC 1 cut(s) 102
FatI CATG 3 cut(s) 82, 120, 186
Fnu4HI GCNGC 2 cut(s) 5, 146
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 2 cut(s) 5, 146
GluI GCNGC 2 cut(s) 5, 146
HaeIII GGCC 1 cut(s) 30
Hin1II CATG 3 cut(s) 86, 124, 190
HinfI GANTC 1 cut(s) 210
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 42
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 2 cut(s) 48, 124
HpyF3I CTNAG 3 cut(s) 141, 162, 227
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 3 cut(s) 86, 124, 190
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 27, 203
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 35
MaeII ACGT 1 cut(s) 115
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 29
MflI RGATCY 1 cut(s) 19
MluCI AATT 2 cut(s) 69, 100
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 2 cut(s) 49, 81
MseI TTAA 2 cut(s) 104, 171
MspA1I CMGCKG 1 cut(s) 7
NdeII GATC 1 cut(s) 19
NlaIII CATG 3 cut(s) 86, 124, 190
PkrI GCNGC 2 cut(s) 6, 147
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 19
SaqAI TTAA 2 cut(s) 104, 171
SatI GCNGC 2 cut(s) 5, 146
Sau3AI GATC 1 cut(s) 19
SchI GAGTC 1 cut(s) 204
SetI ASST 6 cut(s) 92, 118, 142, 147, 196, 233
SfaNI GCATC 1 cut(s) 35
SgeI CNNG 9 cut(s) 35, 47, 54, 61, 88, 95, 133, 199, 230
Sse9I AATT 2 cut(s) 69, 100
SsiI CCGC 1 cut(s) 5
TaiI ACGT 1 cut(s) 118
TasI AATT 2 cut(s) 69, 100
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 104, 171
Tru9I TTAA 2 cut(s) 104, 171
TseI GCWGC 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.